>input_sequence_65482
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-----------------------------------------ATGGCTGCCGCCTCATCTGGCCGTGCAGAGGTCGACACC
TCTCGCGCGTTCCGGTCTGTCAAGGAGGCGGTCGCTGTGTTCGGTGAGCGCATTCTCGCAACGGAAGCACAGTTCAGGCC
GGGTGCACATGCCAACCATCGTGTTGTTAGGGAGAGGAGTTCTTGGCGAGACTCTGTCGCCATTGCTTCCTCAAAAGAGA
AGCTTGAGGGGAGTTCTGACCTCATCAGGGGAAGCCACTCCACCAGTCCAAACGCCATCGCCGTTGCCATTGCCAAGCAC
GAGGGAAATAGCAGTGAGCCTGCTAGAATTGTAATGCCAGTGTCTAATGCCCAGCCAATGTGCCTGGTCCCGTTGTCTCC
ACGGTTCCAGGCATCATCGTCCCCGTCTCTAGCCCGTGGCGACGGCTACGACAAGCAGGACGGGAAGGAAGCCAATCTCA
TGATCATGAGCTCCATCAAGAAGGTGGAGGAAGAGGCGGCCAAGACAAGGCTGGAGGCGGTGCAGGTCAAGAGGAGGCTG
GCCGACCTGGAGCTAGCCATGGCGAACCTCAAAGCGAAGCTCCACCGTGCCCTCTCGAGGCTGGCATACATGGAGGCTGA
CAAGGCGGCGGCCGCAAGGGCCAACATCCAGCAGAGGGATATCAACACGTCGGCGCTGACGGTCTGGGCCGAGGCCAAGA
CCGAGCGGCACCCATTGCGACACCTGCTGAGCCTCGACGATGCCGACGAGGAGGTGAAGCATGGCCAGGAAAGGGAGATG
ACGACGACAACGACGAAGAGGAAGATGCAGAAGCAGAAGCCAATCATGCCCCTTGTTGTTCCGCTCATCAGTGAGGTGCT
TTTCTCCAAGAAGAAGAGGATGAACGACAAGGAGAGCTTGTACCTGAAGGAGCTCTACAGCTTGCTAAGGCTGTCTTGA-
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>chr5D_1_TraesCS5D01G125900
CTGATCTTGCTGCTTTTCTGCAAACTCTGTCCAAGATAATTGAGGATCCCAAGGACCTTACATTCTAGACGCACCAAGTG
ATTCTTTTTCCCTGATGCGATCACATAGGATGCTTGTCAGTAGATGTGTAGCATGTTGGTGGTGTGAATTAGTTACTTAA
GTTGCCAGCTTTGTTGGTATCAGGTAACCTTGTTACCGTCTCCCCATTGGTTTGTTTCTCAATAATCCTTTTACCTTCTG
TTCAGATAGGTGTCAGGCATGAGTATTTACCTGAGTGTTTATTAATTGTTGATTACGTTGAGCTCGATGTACAAGTACAA
CAGATCATGTCACTGCCACCCTTGAATACAAAGAAATGGAATGAACTTTTATCATCAATGTGGTTAAATTTTATTATTGG
ATCCACACTGATTTCTGAATTATTTGATCTGTATGTTCCCAAATCTGAGCATATCAATCTCAAC-AAAAGATGTGACACG
GGAGACAAGAAATAGCGAGCTTGGTCGGGTTGTTGCACTTGCAAGGGTGCCAAGGCGAAATTGCTTAAGAAGAATCAGAA
GATGAGTGAAATGTGACACCATATCTGATATGTTTGAATGGTTGTTTTACAAGTGAAGGCTCATGAGTTCTCCCAACCAC
TCTCATCACACCATAGTCGGGCTATCTGATATTTTGTCTTGTTGTACGTTCCTGGGGCAGCATATATAGTACATTACTTA
ATTTGCTGGGAAAGCATTCCAGCCTCAGCTCAGCTGTACTGCCACTCATCTCTACTTGAAGGGTTCTATTAGGTGGCTAG
TCTTGTCTCTTGCTTGATGGCCTTGCCATTTTGTAGTGGAAGCAAAGCAAGACAGCTGCTTTGATCGACCGCCTTCATAA
TCCCCTCAAGGAGCTTATTCTTGCTTCCATTTCCATAGCCTGGTGGGAAGCCATTGCCTGCAAAAGCTGTTGCTTCTATT
TCTATAGCCTGGTGGGAAGCCATTGCCTGCAAATCTGCGGCATGGCTGCCGCCTCATCTGGCCGTGCAGAGGTCGACACC
TCTCGCGCGTTCCGGTCTGTCAAGGAGGCGGTCGCTGTGTTCGGTGAGCGCATTCTCGCAACGGAAGCACAGTTCAGGCC
GGGTGCACATGCCAACCATCGTGTTGTTAGGGAGAGGAGTTCTTGGCGAGACTCTGTCGCCATTGCTTCCTCAAAAGAGA
AGCTTGAGGGGAGTTCTGACCTCATCAGGGGAAGCCACTCCACCAGTCCAAACGCCATCGCCGTTGCCATTGCCAAGCAC
GAGGGAAATAGCAGTGAGCCTGCTAGAATTGTAATGCCAGTGTCTAATGCCCAGCCAATGTGCCTGGTCCCGTTGTCTCC
ACGGTTCCAGGCATCATCGTCCCCGTCTCTAGCCCGTGGCGACGGCTACGACAAGCAGGACGGGAAGGAAGCCAATCTCA
TGATCATGAGCTCCATCAAGAAGGTGGAGGAAGAGGCGGCCAAGACAAGGCTGGAGGCGGTGCAGGTCAAGAGGAGGCTG
GCCGACCTGGAGCTAGCCATGGCGAACCTCAAAGCGAAGCTCCACCGTGCCCTCTCGAGGCTGGCATACATGGAGGCTGA
CAAGGCGGCGGCCGCAAGGGCCAACATCCAGCAGAGGGATATCAACACGTCGGCGCTGACGGTCTGGGCCGAGGCCAAGA
CCGAGCGGCACCCATTGCGACACCTGCTGAGCCTCGACGATGCCGACGAGGAGGTGAAGCATGGCCAGGAAAGGGAGATG
ACGACGACAACGACGAAGAGGAAGATGCAGAAGCAGAAGCCAATCATGCCCCTTGTTGTTCCGCTCATCAGTGAGGTGCT
TTTCTCCAAGAAGAAGAGGATGAACGACAAGGAGAGCTTGTACCTGAAGGAGCTCTACAGCTTGCTAAGGCTGTCTTGAT
CGGTGGTCTCCATGCTGATTAAACTTGTGCTGATGTGTATGATTGTTTGATCTTGCACACATACCTAACTAATTTGAAAA
TCTTTTCTCAGGTTCTGTGTTTAACTATGTTATTAATTGTGTGAATGAATGGATTAGGGGGAATGATCAAATGTTTGCAG
CTTGTAAATTA---TAATTATTACGTATAAAGGTGGCTAGCATTCTTTATAATTATAATTATAATTATCTTATGGTCAAT
CGATGAAGAAGTCAGAGATTTTGTCCTCTTTGTCAGAGTTATTTATCCAAAATCACCACACTTGGGTTAGGGTAACAACT
TGATGCCATATTTATGTCAGGGCACAAAAACCCACGAAATTGCGCCTAATCTATAACGCAAAGCACTGGTACTCAGATTT
GGTTGAGAAAACAGCAAAACTGACATGATGGGCCCGCCTGTCAGGCTGATGTGTCGAAGACCAAAAACTTTGACCAACTG
ATGTGGCAAATGAGTCGTGTGCCCCACCTGTCAATGACTACACTGTCATCTTCTTCGCATCTCTGCTAGGGGGCATTCCA
TCGAGCAGGTTCTAGGCGGCCGGATTACGTCTGCGGCGTTGTGCCTCTGGTGGAGGCCGCTGTGGAGAGGAGGCGCTCGG
AGCTGCCCGGCCGGAGAGCCGCGGAGCCGTCGCGTCGACAACGCAGCCGGCCGCCATGCCTAGCACGAGGAGCCGCGGAG
CCGTCGCGTCGACAACCCAGCCGGCCGCCATGACTAGCGCGAGGAGCCGCAGAGCACAAACCACACAGCGAGCCAGCCGC
CATGGCCAGCGCGAGGAGCCGCAGAGCTCGTGTCACACAGCGCATCCAGCCGCCATGGCCAGCGCGAGGAGCCACGCCAC
CAACGCGCCCACTGCAGGCTGGCGGAGGTGTGGCAGCGAGGAGCAGGCACGCGCACGCACACATCAAGCTGTCACGGTCG
TCGACATCCCGCCGTGCCGAGCTCGCCTGCCCGTGCGCCTCC
>chr5B_1
CTGATCTTGCTGCTTTTCTGCAAACTCTGTCCAAGATAATTGAGGATTCCAAGGACCTTACATTCTAGACGCACCAAATG
ATTCTTTTTCCCTGATGCGATCACATAGGATGCTTGTCAGTAGATGTGTAGCATGTTGGTGGTGTGAATTAGTTACTTAA
GTTGCCAGCTTTGTTGGTATCAGGTAACCTTGTTACCGTCTCCCCATTGGTTTGTTTCTCAATAATCCTTTTACCTTCTG
TTCAGATAGGTGTAAGGCATGAGTATCTACCTGAGTGTTTATTAATTGTTGATTACGTTGAGCTCGATGTACAAGTACAA
TGGATCATGTCACTGCCACCCTTGAATACAAAGAAATGAAATGAACTTTTATCGTCAATGTGGTTAAATTTTATTATTGG
ATCCACACTGATTTCTGAATTATTTGATCTGTATGTTCCCAAATCTGAGCATATCAATCTCACC-AAAAGATGTGACACG
GGAGACAAGAAATAGCGAGCTTGGTCGGGTTGTTGCACTTGCAAGGGTGCCAAGGTGAAATTGCTTAAGAAGAATCAGAA
GATGAGTGAAATGTGGCACCATATCTGATATGTTTGAATGTTTGTTTTACAAGTGAAGGCCCATGAGTTCTCCCAACCAC
TCTCATCACACCATAGTCGGGCTATCTGATATTTTGTCTTGTTGTACGTTCCTGGGGCAGCAG--ATAGTACATTACTTA
ATTTGCTGGGAAAGCATTCCAGCCTCAGCTCAGCTGTACTGCCACTCATCTATACTTGAAGGGTTCTATTAGGTGGCTGG
TCTTGTCTCTTGCTTGACGGCCTTGCCATTTTGTAGTGGAAGCAAAGCAAGCCAGCTGCTTTGATCGATCGCCTTCATAA
ACCCCTCAAGGAGCTTATTCTTGCTTCCATTTCCATAGCCTGGTGGGAAGCTATTGCCTCCAAAAGCTGCTGCTTCCATT
TCTATAGCCTGGTGGGAAGCCATTGCCTGCAAAGCTGCGGCATGGCTGCTGCCTCGTCTGGCTGTGCAGAGGTCGACACC
TCTCGCGCGTTCCGGTCTGTCAAGGAGGCAGTCGCCGTGTTCGGTGAGCGCATTCTCGCGACTGAAGCACAGTTCAGGCC
GGGTGCACATGCCAACCATCGTGTTGTTAGGGAGAGGAGTTCTTGGCGAGACTCTGTCGCCATTGCTTCCTCAAAAGAGA
AGCTTGAGGGCAGTTCTGACCTCATCAAGGGAAGCCACTCAACCAATCCAAACGCCATCGCCGTTGCCATTGCCAAGCAC
GAGGGAAATAGCAGTGAGCCTGCTAGAATTGTAATGCCAGTGTCTAATGCCCAGCCAATGTACCTGGTCCCGTTGTCTCC
ACGGTCCCAGGCATCATCGTCGCTGTCTCTAGCCCACGGCGACGGCTACGACAAGCAGGACGGGAAGGAAGCCAATCTCA
TGATCATGAACTCCATCAAGAAGGTGGAGGAAGAGGCGGCCAAGACAAGGCTGGAGGCGGTGCAGGTCAAGAGGAGGCTG
GCCGACCTGGAGCTAGCCATGGCGAACCTCAACGCGAAGCTCCACAGTGCCCTCTCGAGGCTGGCATACATTGAGGCCGA
CAAGGCGGCGGCCGCAAGGGCCAGCATCCAGCAGAGGGACATCAACACGTCGGCGCTGACGGTCTGGGCCGAGGCCAAGC
CCGAGCGGCATCCATTGCGACACCTGCTGAGCCTCGACGATGCCGACGAGGAGGTGAAGCATGGCCAGGAAAGGGAGATG
ACGACGACAACGACAAAGAGGAAGATGCAGAAGCAGAAGCCAATCATGCCCCTTGTTGTTCCGCTCATCAGTGAGGTGCT
TTTCTCCAAGAAGAAGAGGATGAACGACAAGGAGAGGTTGTACCTGAAGGAGCTCTACAGCTTGCTAAGGCTGTCTTGAT
CGGTGGTATCCATGCTGATTAAACTTGTGCTGATGTGTATGATTGTTTGATCT-GCACACATACCTAACTAATTTGAAAA
TCTTTTCTCAGGTTCTGTGTTTAACTATTTTATTAATCGCGTGAATGAAAGGATTAGGGGGAATGATCAAATGTTTGCAG
TTTGCAAATTATAGTAATTATTACGTATA---------------------------------------------------
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>chr5A_1
CTGATCTTGCCGCTTTTCTGCAAACTCTGTCCAAGATAATTGAGGATCCCAAGGACCTTACATTCTAGACGCACCAAGTG
ATTCTTTTTCCCTGATGCGATCACATAGGATGCTTGTCAGTAGATGTGTA-CATGTTGGTGGTGTGAATTAGTTACTTAA
GTTGCCAGATTTGTTGGTATCAGGTAACCTTGTTACCTTCTCCCCATTGGTTTGTTTACCAATAATCCTTTTACCTTCTA
TTCAGATAGGTGTCAGGCATGAGTATTTACCTGAGTGTTTATTAATTGTTGATTACGTTGAGCTCGATGTACAAGTACAA
TGGATCATGTCACTGCCACCTTTGAATACAAAGAAATGAAATGAACTTTTATCATCAATATGGTTAAATTTTATTATTGG
ATCCACACTGATTTCTGAATTATTTGATCTGTATGTTCCCAAACCTGAGCATATCAATCTCACCAAAAAGATGTGACCCG
GGAGACAAGAAATAGCGAGCTTGGTCGGGTTGTTGCACTTTCAAGGGTGCCAAGGTGAAATTGTTTAAGAAGAATCAGAG
GATGAGTGAAATGTGGCACCATATCTGATATGTTTGAATGTTTGTTTTACAAGTGAAGGCCCATGAGTTCTCCCAACCAC
CCTCATCACACCATAGTCGAGCTATCTGATATTTTGTCTTGTTGTACGTTCCTGGGGCAGCAG--ATAGTACATTACTTA
ATTTGCTGGGAAAGCATTCCAGCCTCAGCTCAGCTGTACTGCCACTCATCTCTACTTGAAGGGTTCTATTAGGTGGCTAG
TCTTGTCTCTTGCTTGATGGCCTTGCCATTTTGTAGTGGAAGCAAAGCAAGCCAGCTGCTTTGATCGACCGCCTTCATAA
ACCCCTCAAGGAGCTTATTCTTGCTTCCATTTCCATAGCCTGGTGGGAAGCCTTTGCCTGCAAAAGCCGCTGCTTCTATT
TCTATAGCCTGGTGGGAAGCCATTGCCTGCAAAGCTGCGGCATGGCTGCCGCCTCGTCTGGCCGTGCAGAGGTCGACACC
TCTCGCGCGTTCCGGTCTGTCAAGGAGGCGGTTGCCGTGTTCGGTGAGCGCATTCTCGCGAAGGAAGCACAGTTCAGGCC
GGGTGCCCATGCCAACCATCGTGTTGTTAGGGAGAGGAGTTCTTGGCGTGACTCTGTCGCCATTGCTTCCTCAAAAGAGA
AGCTTGAGGGGAGTTCTGACCTCATCAAGGGAAGCCACTCCACCAATCCAAACGCCGTCGCGGTTGCCATTGCCAAGCAC
GAGGGAAAGAGCAGTGAGCCTGCTAGAATTGTAATGCCAGTGTCTAATGCCCAGCCAATGTGCCTGGTCCCGTTGTCTCC
ATGGTCCCAGGCATCATCGTCGCCGTCTCTAGCCCACGACGACGACTACGACAAGCAGATCCGGAAGGAATCCAATCTCA
TGACCATGAGCTCCATCAAGAAGGTGGAGGAAGAGGCGGCCAAGACAAGGCTGGAGGCGGTGCAGGTCAAGAGGAGGCTG
GCCGACCTGGAGCTAGCCATGGCGAACCTCAACGCGAAGCTCCACCGTGCCCTCTCGAGGCTGGCATACATAGAGGCCGA
CAAGGCGGCGGCCGCAAGGGCCAGCATCCAGCAGAGGGACATCAACACGTCGGCGCTGACGGTCTGGGCCAAGGCGAAGC
CCGAGCGGCATCCATTGCGACACCTGCTGAGCCTCGACGATGCCGACGAGGAGGTGAAGCATGGCCCGGAAAGGGAGACG
ACAATGACAACGATAAAGAGGAAGATGCAGAAGCAGAAGCCAATCATGCCCCTTGTTGTTCCGCTCATCAGTGATGTGCT
TTTCTCCAAGAAGAAGAGGATGAACGACAAGGAGAGCTTGTACCTGAAGGAGCTCTACAGCTTGCTAAGGCTGTCTTGAT
CGGTGGTCTCCATGCTGATTAAACTTGTGCTGATGTGTATGATTGTTTGATCT-GCATACATA-----------------
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>SNPs
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SS------------------------------------S-----------------------------------------
--------------------------------------------------------------S-----------------
-------------------------------------------------------S------------------------
---------------S------------------------S-------------------S-------------------
--------------------------------------------------------------SSS---------------
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---------------------------------------------------S----------------------------
S--------------------------------------------------------------------S----------
---------------------------------S---------------------S------------------------
-----------------------------------S-----------------------S--------------------
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---------------------------S-----------------S----------------------------------
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-----S---------------S-------------SS-------------------------------------------
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--------------------------------S--------------------------------------S-----S--
-----------------------S---------------S---------------------------------------S
----------S---------------------------------------------------------------------
--------------S-----------------------------------------------------------------
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-----------------------------------------------------S--------------------------
----------------------------S--------S-S---------S------------------------------
S---S------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_950
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--------------------------------------------------CCATTGCCTGCAAAAGCTGT----------
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>reverse_2689
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------------------------------------------------GCAGAGCACAAACCACACAG------------
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