>input_sequence_65474
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-----------------------------------------------------------------ATGCCAGCCTCCTCC
TGGTTCCACAAGCTCAGGGGGAGGAGCACAAGGAAGGGCAAGCGATCGCCCGCGTGTCCGCCGAGTCCGACCCGTGGCTC
CTCCGCCGACGCAATCGCATTCGTCGCCGCCTCGCCGGAGTGGACGGACCAAAAGACAAGCCAGCAGGGCCGGCCACCCG
CGCGCCCACCGGCGGCGTGCGCCGGCTACTCTCCCAACAGAGCCTCCTACTACTTTCCGAGCGCGGACCGGGCGCCGCGC
CCGGACGGAGCGCTCCGGTGCATCGCCCCGCGCGGCGCCGCCGACGACGACGGCGCGGCCTTGGACGTCCGCGTCGACGT
CATCCATCGCCGCGCCGGCAGGCTCGGCGGGATTGACGCGCCTCCAGCGACGCCGGAGCTCAACCTTCGGCGCATCGTCA
CGAGGCCCGCCGCCAAGAACGACCCCGCGGAAAGCGCCGCCGTCAGCAGCAGCGCCAGCACCCCCACCTCGGCTGCCACG
ACGCCGTCCACCTGCAGGGCGTGGGGGTTCCACGTGAAGCCGGACGGCAGGCGGCGGCGGCAGCGCGGCCACGACGACAA
AAGTACCCGGAAGGAAAAAGCAGCCGAGGACGCGGGCAGCAGGAGACGGCGGTGGCTGTACGAGAGCCTGGTGGTGGTGA
AGACATCGTCGGACCCAGAGAGGGATATGGCGGAGAGCATGGCGGAGATGGTGGCGGCCAACCACATCGGGTCATCAGAG
GACCTCGAGGAGCTGCTGGCGTGCTACCTCGCTCTCAACGCCGCCGAGCACCACCGCGCCGTCCTTGCCGCGTTCCGCCG
CGTCTGGCACTCTGGCTTCACGTCGCCGGCCAAAGAATGCGGCACCTGCGCCATTAAGGCCACAAGCTGCCTGCACCGCA
GGCGAACTACTCCT---AATTCCTAA------------------------------------------------------
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>chr4D_1_TraesCS4D01G171100
GGCACGACAAGGATGCATTTGTCCTGTGTTAATTCACGTGGAAGGAACTTGGTCTCAAATTCTCACCGCACGACCGGGTT
TATGACTACTACTTCCGTCCTGGTTTATCGGTCCCTTTGTAATTTTTGTTAGATTTTAACCCAAGATTTAACTAACAAAC
AAAATTCTCACCGCACGTCAGGGTTTATGACTAGCAAGCAATTCCCCAAAATCTAATCCCAGCAACTTTAAACGGGAACT
GCTTGTACGTACGAGCCACGTCCGGCGCCAATCCACCGTGAATGGCGTGCGGCCGTGAGCATCCGTCATCCATGAATGTA
TTGTGTATGTAGCACCCAGTGGCGGACGACGTACGTGCATGCGGGTTGATCAGATGAGCCGTTCGGCCTGAGAAGAAGAA
ACGCACGCTCCGACGCTCGGCTCTGGTGCCCCACTCTATCGACTGTTATCGTCACTGTTACAGTATAATTACTTAGGTGC
ACCCACCTACACCTACCCTCGCACAAACACGCGGTGCTGGAGTTCAATTTCGGGGCCGTCGGGCGCCACAGGCGCCTGCC
CCACGC----CAGCCGAAAGCTTTGCAAGGATCGGCCCCCTGCGTTTGCATCGCATTCAAATGATGCACAGCACGGTAGA
CCAAAACTTTGACATCTACGACCCTTGTGCTTCCCATACCACGGACAGGACACCAGTA----TCTCTATCTCGCGTACGT
ACTGCTAG-----------TAGATGAATGTAAAGTGCGCCTCAAATACCAGGACCAGTTCACACTCCACAACAAATTGCT
CTGACAAGTAGATATTCGATATCTCTTCGTCCCCCGCATCAGAAAGCTAGCAGACGACGTGTCGCCACATTCGCGATATA
TAACTACC-----GTGCGCTAGCTGGGCACTGCAACTTTGATCACCAACGCGCACACCCACGCCACGCCACGCCACCACA
CACACACGCTCTGTCTT-GGCCGCAACAGAGTGTCTCTGTCTCTGTCTCCCGCCCGGCCCGCGCGATGCCAGCCTCCTCC
TGGTTCCACAAGCTCAGGGGGAGGAGCACAAGGAAGGGCAAGCGATCGCCCGCGTGTCCGCCGAGTCCGACCCGTGGCTC
CTCCGCCGACGCAATCGCATTCGTCGCCGCCTCGCCGGAGTGGACGGACCAAAAGACAAGCCAGCAGGGCCGGCCACCCG
CGCGCCCACCGGCGGCGTGCGCCGGCTACTCTCCCAACAGAGCCTCCTACTACTTTCCGAGCGCGGACCGGGCGCCGCGC
CCGGACGGAGCGCTCCGGTGCATCGCCCCGCGCGGCGCCGCCGACGACGACGGCGCGGCCTTGGACGTCCGCGTCGACGT
CATCCATCGCCGCGCCGGCAGGCTCGGCGGGATTGACGCGCCTCCAGCGACGCCGGAGCTCAACCTTCGGCGCATCGTCA
CGAGGCCCGCCGCCAAGAACGACCCCGCGGAAAGCGCCGCCGTCAGCAGCAGCGCCAGCACCCCCACCTCGGCTGCCACG
ACGCCGTCCACCTGCAGGGCGTGGGGGTTCCACGTGAAGCCGGACGGCAGGCGGCGGCGGCAGCGCGGCCACGACGACAA
AAGTACCCGGAAGGAAAAAGCAGCCGAGGACGCGGGCAGCAGGAGACGGCGGTGGCTGTACGAGAGCCTGGTGGTGGTGA
AGACATCGTCGGACCCAGAGAGGGATATGGCGGAGAGCATGGCGGAGATGGTGGCGGCCAACCACATCGGGTCATCAGAG
GACCTCGAGGAGCTGCTGGCGTGCTACCTCGCTCTCAACGCCGCCGAGCACCACCGCGCCGTCCTTGCCGCGTTCCGCCG
CGTCTGGCACTCTGGCTTCACGTCGCCGGCCAAAGAATGCGGCACCTGCGCCATTAAGGCCACAAGCTGCCTGCACCGCA
GGCGAACTACTCCT---AATTCCTAAACACCTCTGAATTCTCTAGGAATCACATCACAATGCACTTTCGTGTCTCATGCA
TGGATGAGGATGCATCATGCATGCGTA----------------------------------GTGTGTGTGTGTGATCATA
ATCATATCATTGACGGATTGATCGGCTCATGGTCATGATCCAAGTATAT----------------TCTTGTTGCGTTTTA
GTCTTGATGAAAAGGCTAGTA----TAGCTTGCATTCTGTCAAGTTGACACAAGTTTCTTTCTTTTGCGTTTCTCGAACT
TTCATCGGTTGGTGGTAATCTCTCTGGTCCTGGCACGGCGTTGTGAGGCTGAAGAATGGAACAGCACGCCCACGATATGC
GCACCCCACTCTAGCTTCAAAGGCGGATTAGATGCCGCCTTTACAGCTCGATCCGTGCGCTGGGATAATTCAATGGGAAT
TCCGCTGTTTATCACTTTGCCGGTCCAAGAATTCCGTGTGATTACCCAATAATGATAGATAGTTGCGCTCTACTGCTGAC
CAGCTGTACCATCATCACCCTCC--------TTAGTTGATTTAGATTTATCTAGATACGGATTCAACACAAACAAACAAA
AATTGGCATTTTAGCGCAAAAATTAAAAATGCCCCATGCTTCACTCGGG-AGATACTATTTTTTTTAAGGTAAATGTCGC
CGCTTTTATTTAACTTAAAACAAGTCTGGAATCTCGCCAAATCTGGTGGTGATCCAAGCCAAATCTTACAAAGTTCTTCT
CCTACCCCTATCTTTGCTAGTTTATGCGCGGCAACATTTGCAGAACGCCTCACCCACGAAACTCTAAAAGCATTAAAAGA
CCGAAGCATAGTCTTGATCTCCTCCACCCATGAGCCTGTCGCTGCCAAAATCCTTTCCGGAGTGTTGATCACTTGCACTA
GAGCCTGGCTGTCCAGTTCCAGTTGAATTCTGCACATTCATCTCCGCTGCCATCAATAGGGCTCGCTTGCACGCTTTGAT
CTCCGCAGCCTCGGCCTCAAAAACATGAGGGAAGAAGTAGCATGCTTCT
>chr4B_1
GGCACGACAAGGATGCATTTGTCCTGTGTTAATTCACGTGGACGGAACTTGGTCTCAGATTCTCAGATCACACAATTGT-
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-------------------------ACGACGTACGTACATGCGGGTTGATCAGATGAGCCGTTCGGCCTGAGAAGAAGAA
ACGCACGCTCCGACGCTCGGCTCGGGTGCCCCACTCGATCGACTGTTATCGTCACTATTACAGTATAATTACTTAGGTGC
ACCCATCTACACCTACCCTCGCACAAACACGCGGTGCTGGAGTTCAATTTCGGGGCCGTCGGGCGCGACAGGCTCCTGCC
CCACGCGGGCCAGCCCAAAGCTTTTGCGATCAAAT-----------------------AAATGATGCACCGCAGG-----
CCAAAACTTTGACATCTACGACCCTTGTGCTTCCCATACCACGGACAGGGCACCAGTA----TCTCTATCTCGCGTACGT
ACTACGTACATACTACTCCTAGATGAATGTAGAGTGCGCCTCAAATACCAGGACCAGTTCACGCTCCACAACAAATTACT
CTGAAAT---------------------------------------CTAGCAGACGGCGTGTCGCCACATTCGCGATATA
TAACTACTCCTCTGTGAGCTAGCTGGGCACTGCAAGTTTGATCACCA-CGCGCACAC-----CCACCCCACGCCACTACA
CACACTCTCTCTGTCTTAGGCCGCGACAGAGTGTCTCTGTCTC------CCGCCCGGCCCGCGCGATGCCAGCCTCCTCC
TGGTTCCACAAGCTCAGGGGGAGGAGCACAAGGAAGGCCAAGCGATCGCCCGCGTGTCCGCCGAGTCCGACGCGCGGCTC
CTCCGCCG------------------CCGCCTCGCCGGAGTGCACGGACCAACAGACAAGCCAGCAGCGCCGGCCACCCG
CGCTTCCACCGGCGGCGTGTGCCGGCTACTCTCCCAACAGAGCCTCCTACTACTTTCCGAGCGCGGACCGG---------
------GGAGCGCTCCGGTGCATCGCCCCGCGCGGCGCCGACGACGACGACGGCGCGGCCTTGGACGTCCGTGTCGACGT
CATCCATAGCCGCGCCGGCAGGCTCGGCGGCATAGACGCGCCTCCGGCGACGCCGGAGCTCAACCTTCGGCGCATCGTCA
CGAGGCCCGCCGCCAAGAACGACCCCGCGGAAGGCGTCGCCGTTGGCAGCAGCGCCGGCACCCCCACCTCGGCTGCCACG
ACGCCGACCACCTGCAGGGCGCGGGGGTTCCACGTGAAGCCGGCCGGCAGGCGGCGTCG---GCGCGGCCACGACGACAA
AAGTGCCCGGAAGGAAAAAACAGCCGAGGACGCGGGCAGCAGGAGACGGCGGTGGCTGTACGAGAGCCTGGTGGTGGTGA
AGACATCGTCGGACCCGGAGAGGGATATGGCGGAGAGCATGGCGGAGATGGTGGCGGCCAACCGCATACGGTCATCGGAG
GACCTCGAGGAGCTGCTGGCGTGCTACCTCGCTCTCAACGCCGCCGAGCACCACCGCGCCGTCGTTGCCGCGTTCCGCCG
TG--------TCTGGCTTCACATCGCCGGCCAAAGAATGCGCCACCTGCGACACTAAGGCCACAAGCTGCCTGCACCGCA
GGCGAACTACTCCTAATAATTCCTAAACACCTCTGAATTCCTTACGA-----ATCACAATGCACTTTCGTGTCTCATGCA
TGGATGAGGATGCATCATGCATGCATGGTGTGTGTGCTC-----------------------------------ATCATA
ATCATATCATTGACCGGTTGATCGACTCATGGTCATGGTCCAAGTAGGAGTATATTCTTGCGAAATCGTGTTGCGTTCTA
CTAGACTTG--AAGGCTAGTAGGAGTAGCTTGCATTCTGTCAAGTTGACACAACTTTCTTTCTTTTGCGTCTCTCGAACT
TTCATCGGTTGGTGGTAATCTCTCTGGTCCTGGCACGGCCTTGTGAGGCTGAAGAATGGAACAGCACGCCCACGATATGC
GCACCCCACTCTAGCTTCAAAGGCGGATTAGATGCCTCCTTTACAGCTCGATCCGTGCGCTGGGATAATTCAATGGGAAT
TCCGCTGTTTATCACTTTGCCGGTCCAAGAATTCCGTGTGATTACCCAATAATGATAGATAGTTGCGCTGTACTGCTGAC
CAGCTATACCATCAGCACCCTCTATCCCCAATTACTTCACTTAG------------ACGGATTCATCACAAACAAAAATA
AAATGCCATTTTACAGCAAAAATTAAAAAGGTCATATGCTTCACTCACGTAGATACTATT--------------------
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>chr4A_301
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------------------------------------------------------------ATCCGTCATCCATGAATGTA
TTGTGTATGTAGCACC-AGTGGCGGACGACGTACGTACATGCGGGTTGATCAGATGAGCCGTTCGGCCCG---AGAAGAA
ACGCACGCTCCGACGCTCGGCTCGGGTGCCCCACTCGATCGACTGTTATCGCCACTGTTACAGTATAATTACTTAGGTGC
ACCCACCTACACCTACCCCCGCACAAACACGCGGTGCTGGAGTTCAATTTCGAGGCCGTCGGGCACGACAGGCTCCTGCC
CCACGC----CAGCCGAAAGCTTTGCAAGG-------------------------TTCAAATGATGCACAGCACGGTAGA
CCAAAACTTTGACATCTACGACCCTTGTGCTTCCCATACCACGGACAGGACACCAGTATCTCTCTCTATCTCGCGTACGT
ACTACCAGTAGA-------TAGATGAATGTAAAGTGCGCCCCAAATACCAGGACCAGTTCACACTCCACAACAAATTGCT
CTGACAAGTAGATATTCGATATCTCTTCGTCCCCCGCATCAGAAAGCTAGCAGACGACGTGTCGCCACATTCGCGATATA
TAACCACC-----GTGAGCTAGCTGGGCACTGCAACTTTGATCACCA-CGCGCACAC-----CCACGCCACGCCACCACA
CGCACACGCTCTGTCTT-GGCCGCCACAGAGTGTCTCTGTCTCTGTCTCCCGCCCGGCCCGCGCGATGCCAGCCTCCTCC
TGGTTCCACAAGCTCAGGGGGAGGAGCACAAGGAAGGGCAGGCGATCGGCCGCGTGTCCGCCGAGTCCGACCCGTGGCTC
CTCCGCCGACGCAATCGCATTCGTCGCCGCCTCGGCGGAGTGGACGGACCAACAGACAAGCCAGCAGGGCCGGCCACCCG
CGCGCCCACCGGCGGCGTGCGCCGGCTACTCTCCCAACAGAGCCTCCTACTACTTTCCGAGCGCGGACCGG---------
------GGAGCGCTCCGGTGCATTGCCCCGCGCGCCGCCGACGACGACGACGGCGCGGCCTTGGACGTCCGTGTCGACGT
CATCCATCGCCGCGCCGGCAGACTCGGCGGGATAGACGCGCCTCCAGCGACGCCGGAGCTCAACCTTCGGCGCATCGTCA
CCAGGCCCGCCGCCAAGAACGACCCCGCGGAAAGCGTCGCCGTTAGCAGCAGCACCGGCACCCCCACCTCGGCCGCCACG
ACGCCGTCCACCTGCAGGGCGCGGGGGTTCCACGTGAAGCCGGCCGGCAGGCGGCGGCG---CCGCGGCCACGACGACAA
AAGTGCCCGGAAGGAAAAAGCAGCCGAGGACGCGGGCAGCAGGAGACGGCGGTGGCTGTACGAGAGCCTGGTGGTGGTGA
AGACGTCGTCGGACCCGGAGAGGGAGATGGCGGAGAGCATGGCGGAGATGATGGCGGCCAACCGCATACGGTCATCGGAG
GACCTCGAGGAGCTGCTGGCGTGCTACCTCGCTCTCAACGCGGCCGAGCACCACCGCGCCGTCGTTGCCGCGTTCCGCCG
CG--------TCTGGCTTCACATCGCCGGCCAAAGAATACGCCACTAGTACGAGGCC-----------------------
--------------------TCCTAAACACCTCTGAATTCTCTAGGAATTACATCACAATGCACTTTGGTGTCGCATGCA
TGGATGAGGATGCATCATGCATGCATAGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATCATA
ATCATAGCATTGACCAATTGATCGGCTCATGGTCATGATCCAAGTGTAT----------------TCTTGTTGCGTTTTA
GTCTTGATGAAAAGGCTAGTA----TAGCTTGCATTCTGTCAAGTTGACACAAGTTTCTTTCTTTTGCGTTTCCCGAACT
TTCATCGGTTGGTAACCG---CTCTGGTCCTGGCAGGGCGTTGTGAGGCTGAAGAATGGAACAGCACGCCCACGATATGC
GCACCCCACTCTAGCTTCAAAGGCGGATTAGATGCCGCCTTTACAGCTCGATCCGTGCGCTGGGATAATTCAATGGGAAT
TCCGCTGTTTATCACTTTGCCGGTCCAAGAATTCCGTGTGATTACCCAATAATGATAG----TTGCACTCTACTGCTGAC
CAGCTATACCATCAGCACCCTCCATCCCCTATTAGTCGACTTAAATTTGTCTAGATACAGATTCATCACAAACAAAAATA
AAATGTCATTTTA-------------------------------------------------------------------
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>SNPs
------------------------------------------S--------------S-------SSS---SSSSSS--S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------
----------------S-------------------S-------------------------------------------
-----------------------S------------S-------------------------------------------
------------------------------------------------------------------S------S------
------------------------------SSSSSSSSSSSSSSSSSSSSSSSSS-------------------------
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---S-S--------------------------------------------------------------------------
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----------------S------------------------------S---------SSSSS------------------
------------------------S-------------------------------------------------------
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----------------------------------------------------S---------------------------
-----------------------------------------------------------------------SSSSSSSSS
SSSSSS----------------------------------S------------------------------S--------
---------------------------------S----------------------------------------------
------------------------------------S------S------------S-----------------------
---------------------S---------------------S---------------SSS------------------
----S---------------------------------------------------------------------------
----------------S----------------------------------------------S---SS-------S---
---------------------------------------------------------------S----------------
--SSSSSSSS-----------S-------------------S-----------S--------------------------
-------------------------------------------------S------------------------------
------------------------S-------------------------------------------------------
--------------S-----------------------------------------------------------------
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-----S--------S------------------------S--------S----------------S----------S-S-
--S--S-------SS--------------S-S-SS-----------SS------------SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_250
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----------------------------------------------------------------------AACGGGAACT
GCTTGTACGT----------------------------------------------------------------------
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>reverse_1697
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----------------AGAGAGGGATATGGCGGAGA--------------------------------------------
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>forward_592
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------------GCCGAAAGCTTTGCAAGGAT------------------------------------------------
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>reverse_2594
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---------------------------------CCATGCTTCACTCGGGAGAT---------------------------
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