>input_sequence_65473
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--------------------------------------------------------------ATGGACGGTTGCTGGCGG
CTCCCCGGAGGCCACGGCGGCGGCGCCGCCGGCCGCGTCGTCCGCGTGCACTTCCTCGACGCGGATGCCACCGACGACTC
CGACGAGGAGACGAACCAGCCTCAGCGACGCGGCGCGCGACGGTGCGTGCGGGAGATCGGACTGCCGCGCGCGTTCTCTC
GTCTTCCGTCCGCCGCGGCGGGTGCGGTGAGCAGCTCCTCCCACTGGACGCGCGACAAGAGGTTGAGGGCGGCCGCGGCC
GGCAAGAAGCGCACGTTGGTGGCGTGCGGCGGGGATGATTGGTCCGCGGGGACTTGGTCGGCCCGGCAATTGCGCGGCGT
GCGGCGCCGGCCCTGGGGCAAGTATGCGGCGGAGATCCGCGACCCGAAGCTGGGGCGGCGCGTCTGGCTTGGCACCTTCA
ACACCGCCGAGGAGGCCAAGTCCGTCTATGACTCCGCCGTGCTCCGCCTCCGCGGCCCGAGCGCAGTCATGAAGTACACC
GCCCCCTCCCCCTCGCCGCCCCTCTCCACCGTGACGGCGTCCGCGCCGTCGCCGTCGACATCCGCGGCCTCTCCCCCGTC
GCCCTCCACCACGGCGGCCCCTCCTCCGTCGCCCTTCGGC----------------------------------------
--------------------AGGGCGGCCTCTCCCCCGTCACCCTCCACCACGGCGACCTCTGCCCCGTCCCCCATCACC
ACGGCGGCCTCCCCCCCGTCGC---------------CCTCCCAGTCGGCGACCACCAGCTGGTCCTTGGTGAACGCGGA
CGAGGAGGTGACGGCAGCGTTCGGCCTGGGACTCGTCGACGAGGAAACCTCCCTGAACAACCTGATGCAGTTCTGCCTCC
CCGCGGCGTGCAGCAGCAGGTGGGACCCCTCGGCGGACTTCGTGGAGCTGGCGGACCTCGACGACCTCTTCGCGCCGGAG
CCCCTGGCGGCCTGA-----------------------------------------------------------------
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>chr4D_1_TraesCS4D01G120200
TCATGAGTCGGGAAATACCGTCGGGCGGGTCGCG-----------CCCGTGTTGTCCCCGTCTCGCTGTTCGGTGAGCCA
AGCAAGAAAAGAGAGAAATACTCCACGTGCCCATGCGTGCACACACGACACGCCGCGCGCTTGTTACCCTCGCCGTTCCG
ATACGTCGGGCCCACAAATC------TATCTCTCATCCCAGGCGCTCGCGTGTCGACTGTGGAGTTCGGGAGAGAGGCCG
AGGCGACCGCACCACTCTTGAGAACATGACCAGCTTGTCCCTGG-CACACGCGGTGAAATACGCCCAGTGCCCCTGGTGC
TCCTCTGTCGGCCTGCCGTACGGACGGGCCCGCATAGCGACGACGCATCCGACGGGCGCCGCAGGTCCACGCCACCCCAC
TTGCTCTCCGGCATGTCAGAATCTATTTATCACCGCCCGGCTACCTACCCATCCCCCGCCCCCGCTGCCTCCGACCCGAC
GGCAACGAAACTTTATCCCGTGGACCCGCACGTCAGCGTGGCGGGGCACGTTGC-GTATCGCGAGGTGGTTGTAGATATT
TACCGCTCACGTGAAGTGACCAACACGCTCCGCTGACGCGTGGGCCCGTGGCCAGCTGGAGAGCAGAGCCGCAGCTGCGC
GGCTCGCCCGCCAAGCCGGAAGCAGCTCTGCACCGG-GGGCACCATCGCTGTCGTAACTGACACACGGGCCCCACATGGT
CCCGGGCCCCGCAGGTCCGTGGGCAGTGGCGCTCAAAGAGATGGCAAGTTTGCATAAATACCCCTGCCACCGCGCGCTTC
ACGCCTCCTTCTTTGCACGCTCTTTTTTACACTTCACCCATTCCACCCCCTCCCT--GTTTACAGGTGGAGATAGAGAGA
GAAGCGCCGAACCCCATCCAATCCTTTCTCTCTCTAAAACCCTCCCAAAACCACACCCAACCAACAAGGGAGCTCCGCCA
AATCCGTTCGTCCGTTGCCAGCTGATGAAATCGGGGCTTGCTGCTGTCCACTCTCGTCGGTGATGGACGGTTGCTGGCGG
CTCCCCGGAGGCCACGGCGGCGGCGCCGCCGGCCGCGTCGTCCGCGTGCACTTCCTCGACGCGGATGCCACCGACGACTC
CGACGAGGAGACGAACCAGCCTCAGCGACGCGGCGCGCGACGGTGCGTGCGGGAGATCGGACTGCCGCGCGCGTTCTCTC
GTCTTCCGTCCGCCGCGGCGGGTGCGGTGAGCAGCTCCTCCCACTGGACGCGCGACAAGAGGTTGAGGGCGGCCGCGGCC
GGCAAGAAGCGCACGTTGGTGGCGTGCGGCGGGGATGATTGGTCCGCGGGGACTTGGTCGGCCCGGCAATTGCGCGGCGT
GCGGCGCCGGCCCTGGGGCAAGTATGCGGCGGAGATCCGCGACCCGAAGCTGGGGCGGCGCGTCTGGCTTGGCACCTTCA
ACACCGCCGAGGAGGCCAAGTCCGTCTATGACTCCGCCGTGCTCCGCCTCCGCGGCCCGAGCGCAGTCATGAAGTACACC
GCCCCCTCCCCCTCGCCGCCCCTCTCCACCGTGACGGCGTCCGCGCCGTCGCCGTCGACATCCGCGGCCTCTCCCCCGTC
GCCCTCCACCACGGCGGCCCCTCCTCCGTCGCCCTTCGGC----------------------------------------
--------------------AGGGCGGCCTCTCCCCCGTCACCCTCCACCACGGCGACCTCTGCCCCGTCCCCCATCACC
ACGGCGGCCTCCCCCCCGTCGC---------------CCTCCCAGTCGGCGACCACCAGCTGGTCCTTGGTGAACGCGGA
CGAGGAGGTGACGGCAGCGTTCGGCCTGGGACTCGTCGACGAGGAAACCTCCCTGAACAACCTGATGCAGTTCTGCCTCC
CCGCGGCGTGCAGCAGCAGGTGGGACCCCTCGGCGGACTTCGTGGAGCTGGCGGACCTCGACGACCTCTTCGCGCCGGAG
CCCCTGGCGGCCTGACCGGACGG-------AAGCGGCGACGGCAGCTCCACAGCAACTTTTTGAAAGAGAACAGTTTTAA
ACATAATTTGACTTTATTTCTCGGGAGTCTGCATATTTTGAGAGGCGTGCGGAAATATTTATCCGAAACTTTTGCTTGGC
ATTTTATTTCGAGAGAGGAATAAATCGTAGCAGCCGGAGGGGAAAAGACCGAAATGTTGTCTTCTTCTCCGAGGCCTACC
GTTAAGCTTAGGGGCGTTTTTGTAATTTGGAGTGAGGAGGTGTTGTCTTGTGTGCGAGCGTGTCGGGGCTGGATTTGAGC
TTGCCGAGAGAAAGGCTGCCCTTGAGGGGACAGGAGCTGGAGAGGACGA---AGTAGTACCAAGCTTTGCTTGAGTTTTA
CGTTGTGGGAACGAGTGATCGCTATGCACGTGAGCCGTTTCT-CCTGTGTTAAAATCTGGAAAGTT-AGTAATGGTTTGG
GTGTGGTAATTTGAAAAGAAATCTC-GGTGCAACATGTTTATGATGTACTCCCTCCAGGAATATAAGAGCATATAAATCA
CTATTTTAGTGATCTAAATGTTCTTATGTTTATTTATATTTGTTTACAGAGGGAGTACGTGATGCTACTACTGTGCTGCA
TTGTGCATATACTTTCTTCGTTCCTAAATATAAATCTTTGTAGATATTTCACTATGAACTACATATAGAGCAAAATGAGT
GAATTTATACTCTAAAATGCATCTATATATATTCGTATGTGGTTCATAATGGAATCTCTACAAAGTCTTATATTTAGAAA
CGGAGGGAGTGTTGTCCTTGGCGGCGACTCGAGCGACGACTCCCACCGTCGCCACTAGCGCCTCCATCCTGCCTCCCCCT
TCTTGCCGCCACCGGCTAGGGTCGCAGGGGCAAAGCCCCTCGCACTACACGGTGGCGGTGGGCGACTTCCTCCTTCCCTC
TCCTCCCCTCATGCCTTGGCTGCGGGCGCCTGCCCGAATCCGCGAGCTTGCGCTGGGGCCGGTGCTGC
>chr4A_1
TCATGAGTCGGGAAATACCGTCGGGCCGGTCGCGCCCGTGTTGTCCCCGTGTTGTCCCCGTCTCGCTGTTAGGTGAGCCA
AGCAAGAACAGAGAGAAATATTCCACGTGCCCATGCGCACACACT-----------------------CTCGCCGTTCCA
ATGCGTCGGGCCTACACATCTAC-AGTATCTCTCATCCCAGGCGCTCGCGTGTCGACTGTGGAGTTCGGGAGAGAGGCCG
AGGCGACCGCAC--------AGAACATGACCATCTTGCCCCTGGTCACACGCGGTAAAATACACCCGATGCCCCTGGTGC
TCCTCTGTCGGCCTGCCGTACGGACGGGCCCGCATCGCGACGACGCATCCGACGGGCGCCGCAGGTCCACGCCACCCCAC
TTGCTCTCCGGCATGTCAGAATCTATTTATCACCGCCCGGCTACCTACCCATCACCCGCCCCCGCTGCCTCCGACCCGAC
GGCAACGAAACTTTATCCCGCGGACCCGCACGTCAGCGTGGTGGGGCACGTAGGGGTATCGCGAAGTGGTTGTAGATATT
TACCGCTCACGTGAAGTGACCAACACGCTCCGCTGACGTGCGGGCCCGTGGCCAGCTGGAGAGCAGAGCCGCAGCAGCGC
GGCTCGCCCGCCAAGCCGGAAGCAGCTTTGCACCGGGGGGCACCATCGTTGTCATAACTGACACACGGGTCCCGGTTGGT
CCCGGGCCCCGCAGGTCCGTGGGCAGTGGCGCTCCAAGAGATGGCAAGTTTGCATAAATACCCCTGCGACCGCGCGGTTC
ACGCCTCCCTCTTGCACCCTC---TTTTACACTTCACCCATTCCACCCCCTCCCTCTGTTTACAGTTGGAGATAGAGAGA
GAAGCGCCGAACCCCATCCAATCCTTTCTCTCTCTAAAACCCTCCCAAAACCACACCCAACCAACAAGGGAGCTCCGCCA
AATCCGCTCGTCCGTTGCCAGCTGATGAAATCGGGGCTTGCCGCGGTCCACTCTCGTCGGTGATGGACGGTTGCTGGCGG
CTCCCCGGAGGCCACGGCGGCGGCGCCGCCGGCCGCGTCGTCCGCGTGCACTTTCTGGACGCGGATGCCACCGACGACTC
CGACGAGGAGACGAACCGGCCTCAGCGACGCGGCGCGCGGCGATGCGTGCGGGAGATCGGCCTGCCGCGCGGGTTCTCTC
---TTCCGTCCGCCGCGGCGGGTGCGGTGAGCAGCTCCTCCCACTGGACGCGCGAGAAGAGGTTGAGGGCGGCCGCGGCC
GGCAAGGCGCGTACGTTGGTGGCGTGCGGCGGGGATGATTGGTCCGCGGGGGCTAGGGCGGCCCGGCGATTGCGCGGCGT
GCGGCGCCGGCCGTGGGGCAAGTATGCGGCGGAGATCCGCGACCCGAAGCTGGGGCGGCGCGTCTGGCTTGGCACCTTCA
ACACCGCCGAGGAGGCCAAGTCCGTCTATGACTCCGCCGTGCTCCGCCTCCGCGGCCCGAGCGCAGTCACTAAGGACACC
GCGCCTTCCCCCTCGCCGCCCGTCTCCACCGTGACGGCGTCCGCGCCGTCGCCGTCGACATCCGCGGCCTCTCCCCCGTC
GCCCTCCACCACGGCGGCCCCTTCTCCGTCGCCCTACGGT----------------------------------------
--------------------AGGGCGGCCTCTCCCCCGTCGCCCTCCACCACGGCGACCTCTGCCCCGTCGCCCATCAGC
ACGGCGGCCTCCCCCCCGTCGCCCTCCACCACGGCGGCCTCCCAGTCGGCGACCACCAGCTGGTCCTTGGTGAACGCGGA
CGAGGAGGTGACGGCAGCGTTCGGCCTGGGATTCGTCGACGAGGAGACCTCCCTGAACAACCTGATGCAGTTCTGCCTCC
CCGCAGCGTGCAGCAGCAGGTGGGACCCCTCGGCGGACTTCGTGGAGCTGGCGGACCTCGACGACCTCTTCGCGCCGGAG
CCCCTGGCGGCCTGACCGGACGGGACGGGAGAGCGGCGACGGCAGCTCCACCGCAACTTTTTGAAAGAGAACAGTTTTAA
ACATAATTTTACTTTATTTCTCGGGAGTCTGCATATTTTGAGAGGCGTGCGGAAATATTTATCCGAAACTTTTGCTTGGC
ATTTTATTTCGAGAGAGGAATAAACCGTAGCAGCCGGAGGGAAAAAGACCGAAATGTTGTCTTCTTCTCCGAGGCCTACC
GTTAAGCTTAGGGGCGTTTTTGTAATTTGGAGTGAGGATGTG---------------GCGTGTCGGGGCTGGATTTGAGC
TTGCCGAGAGAAAGGCTGCCATTGAGGGGACAGGAGCTGGCGAGGACGA---AGTAGTACCAAGCTTTGCTTGGGTTTTA
CGTTGTGGGAACGAGTGATAGCTATGCACGTGATCCGTTTTCC-------------------------------------
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>chr4B_35
---------------------------------------------CCCGTGTTGTCCCCGTCGAGCTGTTAGGTGAGCCA
AGCAAGAAAAGAGAGAAATACTCCACGTGCCCATGCGTGCACACACGACACGCCGCGCGCTTGTTACCCTCGCCGTTCCG
ATGCGTCGGGCCCACACATCTAGGAGTATCTCTCATCCCAGGCGCTCGCGTGTCGACTGTGGAGTTCGGGAGAGAGGCCG
AGGCGACCGCACCACTCTTGAAAACATGACCAGCTTGCCCCTGGGCACACGCGGTAAAATACGCCCAGTGCCCCTGGTGC
TCCTCCGTCGGCCTGCCGTACGGACGGGCCCGCATCGCGACGACGCATCCGACGGGCGCCGCAGGTCCACGCCACCCCAC
TTGCTCTCCGGCATGTCAGAATCTATTTATCACCGCCCGGTTACCTACCCATCTCCCGCCCCCGCTGCCTCCGACCTGAC
GGCAACGAAACTTTATCCCCTGGACCCGCACGTCAGCGTGGTGGGGTACGTAGGGGTACCGCGAAGTGGTTGTAGATATT
TACCGCTCACGTGAAGTGACCAACACGCTCCGCTGACGCGCGGGCCCGTGGCCAGCTGGAGAGCAGAGCAGCAGCTGCGC
GGCTCGCCCGCCAAGCCGGAAGCAACTTTGCACCGG-GGGCACCATCGTTGTCGTAACTGACACACAGGGCCCACATGGT
CACGGGCCCCGCAGGTCCGTGGGCAGTGGCGCTCAAAGAGATGGCAAGTTTGCATAAATACCCCTGCCACCGCGCGCTTC
ACGCCTCCCTCTTGCACACTC---TTTTACACTTCACCCATTCCACCCTT---CTCTGTTTACAGGTGGAGATAGAGAGA
GAAGCGCCGAACCCCATCCAATCCTTTCTCTCTCTAAAACCCTCCCAAAACCACACCCAACCAACAGGGGAGCTCCACCA
AATCCGTTCGTCCGTTGCCAGCTGATGAAATCGGGGCTTGCCGCGGTCGACTCTCCTCGGTGATGGACGGTTGCTGGCGG
CTCCCTGGAGGCCACGGCGGCGCCGCCGCCGGCCGCGTCGTTCGCGTGCACTTCCTCGACGCCGATGCCACCGACGACTC
CGACGAGGAGACGAGCCAGCCTCAGCGACACTGCGCGCGACGGTGCGTGCGGCAGATCGGCCTGCCGCGCGCGTTCTCTC
ATCTTCCGTCCGCTGCGGCGGGTGCGGTGAGCAGCTCCTCCCACTGGACGCGCGAGAAGAGGTTGAGGGCGGCCGCGGCC
GGCAAGACGCGTACGTTGGCGGCGTGCGGCGGGGATGATTGGTCCGCGGGGGCTAGGGCGGCCCGGCGATTGCGGGGCGT
GCGTCGGCGGCCGTGGGGCAAGTATGCGGCGGAGATCCGCGACCCGAAGCTGGGGCGGCGCGTCTGGCTTGGCACCTTCA
ACACCGCCGAGGAGGCCAAGTCCGTCTATGACTCCGCCGTGCTCCGCCTCCGCGGCCCGAGCGCAGTCACTAAGTACACC
GCGCCCTCCCCCTCGCCGCCCATCTCCACCGTGACGGCGTCCGCCCCGTCGCCGTCGACATCCGCGGCCTCTCCCCCGTC
GCCCTCCACCACGGCGGCCCCTCCTCCGTCGCCCTTCGGCAGGGCGGCCTCTCCCCCGTCGCCCTCCACCATGGCGGCCC
CTCCTCCGTCGCCCTTCGGCAGGGCGGCCTCTCCCCCGTCGCCCTCCACCACGGCGACCTCTGCCCCGTCGCCCATCACC
ACGGCGGCCTCCCCCCCGTCGCCCTCCACCACGGCGGCCTCCCAGTCGGCGACCACCAGCTGGTCCTTGGTGAACGCGGA
CGAGGAGGTGACGGCAGCGTTCGGCCTGGGATTCGTCGACGAGGAGACCTCCCTGAACAACTTGATGCAGTTCTGCCTCC
CCGCGACGTGCAGCAGCAGGTGGGACCCCTCGGCGGACTTCGTGGAGCTGGCCGACCTCGACGACCTCTTCGCGCCGGAG
CCCCTGGCGGCCTGACCGGACGG-------GAGCGGCGACGGCAGCTCCACCGCAACTTTTTGAAAGAGAACAGTTTTAA
ACATAATTTTACTTTATTTCTCGGGAGTCTGCATATTTTGAGAGGCGTGCGGAAATATTTATCCGAAACTTTTGCTTGGC
ATTTTATTTCGAGAGAGGAATAAATCGTAGCAGCCGGAGGGAAAAAGACCGAAATGTTGTCTTCTTCTCTGAGGCCTACC
GTTAAGCTTAGGGGCGTTTTTGTAATTCGGAGTGAAGAGGTGTTGTCTTGTGTGTGAGCGTGTCGGGGCTGGATTTGAGC
TTG---AGAGAAAGGCTGCCATTGAGGGGACAGGAGCTGGAGAGAACGAAGTAGTAGTACTGAGCTTTGCTTGGGTTTTA
CGTTGTGGGAACGGGTGATAGCTATGCACGTGAGCCGTTTTCCCCTCTGTTAAAAATCCGGAAAATAAGTCATGGTTTGG
GTGTGATAATTCAAAAAGAAATCTGTGGTGCAACATGTTTATGATGTAC-------------------------------
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>SNPs
--------------------------S-------------------------------------------S---------
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--S-------------S---------------------------------------------------------------
-------------------------------------S-----------------S------------------------
-----------------------------------S--------------------------------------------
-----------------------------------------------------S--------------------------
-----------------------------------------S---------S-S----------S---------------
----------------------------------------S---------------------------------------
---------------------------S--------------------S--------------------S----------
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--------S----SSSS-SSSSSS--------------------------------------------------------
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-----------------------------------------S--S-----------------------------------
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------------------------------------------------------------S-------------------
S------------------------------------------------------S------------------------
-------S---S---------------------------------------S--S--S---------S------------
------------S-------------------------------------------------------------------
---------------------------------------------------------------------SS---------
--S------------------S----------------------------------------------------------
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----------------------------------------S-----------------------------S---------
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-------------------------------S-------------S----------------------------------
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------------------------------S--------------------S----------------------------
---------S----------------------------------------------------------------------
-----------------------------------------S--------------------------------------
------------------------------------------------------S-------------------------
--------------------S----------------------------------------------------S------
-------------------S--------------------SS----S--------SSSS-S--SS-----S---------
-----S-----SS-----------S------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_817
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-----------------------------------------------------------------------------TTC
ACGCCTCCTTCTTTGCA---------------------------------------------------------------
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>reverse_2802
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-GGAGGGAGTGTTGTCCTTGG-----------------------------------------------------------
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