>input_sequence_65471
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-----------------------------------------ATGGCAAGCTCAATCGC-------TAGCACCATGGCACT
TTGCAGAGCGCGCAGCGGGCTGCTGCTTCTCGGCATGGCTCTGCTCCCTCTGGGCATGGCCATGGACGCCATTGGCAGTA
ACTGCGCCGGGACCAGGTACGCTGGCAGCGGCAAGGCCAACATCGACTCCGTCCTGGCGGACCTCGTCGCCAAGGGCTCC
TCGGGAGGCTTCGCCACGGCCGTTGCCGGCAAGGGTAATAGCACCGTCGTCTACGGCCTCGCGCAATGCCGCGGCGACGT
CTCCGCCAGCGACTGCTCCTCCTGCCTCGCGGACGCCGCCAAGCAGCTCCCCACTGCCTGCAGCTACCTATCCGACGCCA
GAATATGGTACCACTTCCTATAATCATCCTCTTACAAGTTTAGAACGATCGATGGATATACATGCTTAATCATCTGGCTA
AGCTTGGCTGGCCTGTACGTACGCGCGTGCAGGTACGACTTCTGCTTCATGCGGTACGACGACACAGACTTCGCCGGGCA
GTCGGACACGGGCGCCGGCGTGATCTTGGTGAACGTGCAGGCGGCGGACGACCCCAAGCCGTTCAAGAAGGCGGTGGGGA
AGGTGATGAACAAGGCGACGGCGCAGGCGTCGGCGTCGGGCCGCGCGGGGCTCGGCAGGTCCAAGGACCAGTACACGCCG
TTCGTCACCATCTACGGCCTGGCGCAGTGCACGCGGGACCTCGCGCCGCTGGTGTGCGCGCAGTGCGTCTCGGTGGCGCT
GTCCAAGTTCGGCGACTACTGCGGCGCGCAGCAGGGCTGCCAGATCAACTACAGCAGCTGCAGGGTGCGCTACGAGATCT
ACCCCTTCTACTTCCCGCTGGACGGCGCCGGCGGCCGCGCCACCACCGATATGACGAAATACACCAAGATCGTCGTGCAC
GCTTGA--------------------------------------------------------------------------
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>chr4A_1_TraesCS4A01G099000
CGATGCCCATGCACACCCTCTCGAGCGCACCAGTCCGGTAATGTCTCTCCTGGTTGCGGCACGCCCTGCTGAATGCCTAA
GGCCGTGAAGACCTTGGCCCACACTTTGCGTGCAAGAACGCACTCGATGAGCAGATGGCCAATCGTCTCCTCATGCTGAT
CACAGAAAGGGCATGAATCCTGGTGCAGCCGCCTTCTTCGTGCCAATCTATCCGAGGTCCAGCATCGGTTCATGATCGCA
AGTCAAGCAAAGAATTTGCACCGAAGCGGGGTCCGCGATCGCCATGTGAATAACTGAACAAATGTTTTCTACCACCCGAC
GATAGTATAACTCAACAACTGAGTGTGTCCACTCAAAAAAAAAAAACCGAGGGTGTGGCTACCCCTCAAAAAGGAAAAAT
CTGAGGGTGTGTCTTACATATCTTTGATCCATAAAATGCTTGCTCGAAATAACGAGCTTTCTTTTTCAGTTCCGTCTCTG
CTCTTTTATTTTTACGGGTACCGTCTCTGCTCCTTTGAAGCCCCAGGAATCGAATGCGGATTTTCCACAGCGCGTTGCGT
CCAGATTGCCTTTTCCAC-AGGGAGTCAAAACTCATTGGATTCTCACAATCCCTGCCACCCATTACCAAGCCACATCCTC
ACAAAGACAAGTCAACGAGTCATGAAATGCCGCGAACCAGCTAGCTGTAGCAACTACTCCCTCCGTTCCAAGTTACTTAT
CGTAGAAATGGATGTATCTAAAACTAAAATACATCTAGATACATTCATACCCGCAACAAGTAATTCGGAAGGGAGGGAGT
AGCAAGTACCAAGCAGCAAGATATGCACGATATGCCCATCCCTCTCTGCCCATGTGCATGGACCCTTGGCTGATTCAGCA
ATAGCTCGGTCCACGGCCTCATTCTAGTGTCGACGTCTGGCATTGTACGCAATCCAATTAAGCAGTCAAAGAAAGGCAGC
ACGCTCGCACTTGTTATAAGCTCCCACCATTCGCCACACACATGGCAAGCTCAATCGC-------TAGCACCATGGCACT
TTGCAGAGCGCGCAGCGGGCTGCTGCTTCTCGGCATGGCTCTGCTCCCTCTGGGCATGGCCATGGACGCCATTGGCAGTA
ACTGCGCCGGGACCAGGTACGCTGGCAGCGGCAAGGCCAACATCGACTCCGTCCTGGCGGACCTCGTCGCCAAGGGCTCC
TCGGGAGGCTTCGCCACGGCCGTTGCCGGCAAGGGTAATAGCACCGTCGTCTACGGCCTCGCGCAATGCCGCGGCGACGT
CTCCGCCAGCGACTGCTCCTCCTGCCTCGCGGACGCCGCCAAGCAGCTCCCCACTGCCTGCAGCTACCTATCCGACGCCA
GAATATGGTACCACTTCCTATAATCATCCTCTTACAAGTTTAGAACGATCGATGGATATACATGCTTAATCATCTGGCTA
AGCTTGGCTGGCCTGTACGTACGCGCGTGCAGGTACGACTTCTGCTTCATGCGGTACGACGACACAGACTTCGCCGGGCA
GTCGGACACGGGCGCCGGCGTGATCTTGGTGAACGTGCAGGCGGCGGACGACCCCAAGCCGTTCAAGAAGGCGGTGGGGA
AGGTGATGAACAAGGCGACGGCGCAGGCGTCGGCGTCGGGCCGCGCGGGGCTCGGCAGGTCCAAGGACCAGTACACGCCG
TTCGTCACCATCTACGGCCTGGCGCAGTGCACGCGGGACCTCGCGCCGCTGGTGTGCGCGCAGTGCGTCTCGGTGGCGCT
GTCCAAGTTCGGCGACTACTGCGGCGCGCAGCAGGGCTGCCAGATCAACTACAGCAGCTGCAGGGTGCGCTACGAGATCT
ACCCCTTCTACTTCCCGCTGGACGGCGCCGGCGGCCGCGCCACCACCGATATGACGAAATACACCAAGATCGTCGTGCAC
GCTTGACGTAGAGGCTCCTTGCACATGTCCGACGTGCTTCATGC------------------------------CTTTGG
TGTTGAGATGCAAGTGAGACGTGATATCTGAGCTGCATGCACTTAATAAGCGGGGGTTATGTAA----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------GCTGTAGCCATCGCGTGCAGCGATTGGGAATAAAATTATGCACCAAATCCAGTGT
TTGTAGTGGTTGCTAAGAGCATCTCCAACAGACGCGCGGTAGCGCGGCGCGCTAAAACGGTTTTGCAAAGCTGAAATAGT
GTTTTTGCGCGCGGGAGGTTTAACAGACGCACAAAAACACGACGCCCAACCCGGTGGCCCCACATGCAGCAGCCCGCGCG
CACAAGCCGGCGTCCCAAATTTGCAGCCCCGCAGCCCGTGTTCACTAAATTTACAGCTTCATCTTTATGCGTGCTCTATT
TTACAGCTTCTGTTGGAGCGTTATTTTTGTCGCACACTCTATATAGGCATCTTTTTCAACGCGCGGCTTATATAGCGCAT
TTATTGGAGATGCTCTAAGTGGTTCATGCACATCGTTGTAATTTTTATTACCTTTATTGTTCTTTGTACTGT--------
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-------------------------------------------------CATGATCAAAGATGAATAGATTGGAAGTTTT
TCATAAAAAGAAG---AAGCAAAGTGTGTCATCCCTCTGTTTCTAGATGAGAGAAGTGTATCAGAGGCTGCTTAGGGTGT
AAACCATCTCAAAAGAATCATGTTGGCTCTCCCGACCTCAAAAGAGGCTTTCGCTTCGCTTTATATGCAAAGAAACAACC
GAATAAAGTGAAGGAAATATGCCATAAAGGCAATAATAAAGTTGTTATTTTTATATTTCCTTATTCATGATAAAGGTTTA
TTATTCATGCTATATTTGTATTGATCGAAAACCTTAATACATGTATGAATACATAAACAAACACTGTGTCCCTAGTAAGC
CTCTACTAGACTAGCTCGTTGATCAAAGATGGTTAAGGTTTTCTAACCATGGACATGAGTTGTCATTTGATAACGGGATC
ACATCATTAGGAGAATG
>chr4B_412
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-----------TCCTACATGTCTTTGTTCCAT--AATGCTTGCTCGAAATAACGAGTTTTCTATTAGCGCGACGAACTTT
TTTA-------------GTTCCTTCTCTGGTCCTTTGAAGCCCCAGGAATCGAATGCGGATTTTCTACAGCGCGTTGCGT
CGAGATTGGCTTTTCCCCAAGGGAGTCAAAACTCATTGGATTCTCACAGTCCCTACCACCCATTTCTAAGCCACATCCTC
ACGAAGACAAGTCAACGAGTCATGAAATGCCGCGAACCAGCTAGCTGTAGCAACTACTAG--------------------
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---------CAAGTAGCAAGATATGCAAGATATGCCCATCCCTCTCTGCCCATATGCATGGACCCTTGGCTGATTCCGCA
ATAGCTCCGTCCACGGCCTCATTCTAGTGTCGACGTCTGGCGTTGCACGCAATCCAATTAAGCAGTCAAAGAAAGGCAGC
ACGCTCGCACTCGTTATAAGCTGCCACCATTCGCCACACACATGGCAAGCTCAATCGTTAGCACTTAGCACCATGGCACT
TTGCAGAGCGCGCAGCGGGCTGCTGCTTGTCGCCATGGCTCTGCTCCCTCTGGGCATGGCCATGGACGCCATTGGCAGTA
ACTGCGCCGGAACCAGGTACGCTGGCAGCGGCAAGGCCAACATCGACTCCGTCCTGGCGGACCTCGTCGCCAAGGGCTCC
TCGGGAGGCTTCGCCACGGCCGTTGCCGGCAAGGGTAATAGCACCGTCGTCTACGGCCTCGCGCAATGCCGCGGCGACGT
CTCCGCCAGCGACTGCTCCGCCTGCCTCGCGGACGCCGCCAAGCAGCTCCCCGCCGCCTGCAGCTATCAGTCCGACGGCA
GAATATGG------------------------------------------------------------------------
---------------------------------TACGACTTCTGCTTCATGCGGTACGATAACACAGACTTCGCCGGGCA
GTCGGACACGGGCGCCGGCGTGATCCTGGTGAACGTGCAGGCGGCGGACGACCCCAAGCCGTTCAAGAAGGCGATGGGGA
AGGTGATGAACAAGGCGACGGCGCAGGCGTCGGCGTCGGGCAGGGCGGGGCTCGGCAGGTCCAAGGACCAGTACACGCCG
TTCGTCACCATCTACGGCCTGGCGCAGTGCACGCGGGACCTCGCGCCGCTGGCGTGCGCGCAGTGCGTCTCGGTGGCGCT
GTCCAAGTTCGGCGACTACTGCGGCGCGCAGCAGGGCTGCCAGATCAACTACAGCAGCTGTAGGGTGCGCTACGAGATCT
ACCCCTTCTACTTCCCGCTGGACGGCGCCGATGGCCGCGCCACCACCGATATGACGAAATACACCAAGATCGTCGTGCAC
GCTTGACGTAGAGGCTCCTTGCACATGTCCGATGTGCTTCATGCAATAACGTACTATTGCTATTATTATCATACCTTTGG
TGTTTAGATGCAAGTGAGACGTGATATTTGAGCTGCATGCACTTAATAAGCAGGTGTTATGTAAGCGAGTAATGCTACAC
GTACAAACGAATTACAAGGTTTTACAAAAAGGGTTAATTTGATTGGTCAATATGTGAGGAAGCGGCCCACCCCCTGAAAA
TCAGGGGGGGGGGGGCAAGTTTGTGATTGGTTAGTAGATGGAAAAAATCCTAGTCAGCGTGTAATTGCGTGTAACTCTTT
GTATGTTTAGCATTATTGTATGTAAGCTGTAGCCATCGCGTGCAGCGACTGGGAATAAAATTATGAACGAACCTCTGGTG
CTTCCGGTCGTCGCTAATGGTTCACAAACATGGT----------------------------------------------
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-----------------------------------TTGTAATTTTTATAACCTCTGTTGTTTTTGTATTATCATGATTTA
AAAAAAGAGAGGATTACCTCTGGCATCTGCATCAGCATGATGCACACATCCATCTTTGGTTATTATTAATCGGAGTGTGA
CAAATGAATACGAGATCCACCCAAAAGCCCCCTTTAGGCGAACAAACTCGCTACACCTATAAGTATACGAATGTGCCCTG
TCCGCATAACAGACACAATCTAATCCAGTGGCCTGAAGATTATTCGGTCTAGGCGTCCATAACGTGCAACGCTTGCGCAT
GCTCTAGAATCCGCCGCCGCAATCTTTCGCCATCCCGTCTTCAGGAGGAATAACTGTATAGATCTTGCCAGTCCTATCTG
CCGTCGATGTCACTGCGACACTAGACAACGCCACCAGCCTACGCGCGTCAATCAATCCGCGTCCAACTCCGAGACTCCAC
TGCTCCACGTCGTTGAGACCCATCGTCATCAATGCAGTCTGTAACACCGCTCGACCTGTTGGCCTCTCCAATGAACCAGT
GCTCCAAGACGATGCCCCCAAGAGGGAGAACAGCACCAACATCATCCGATACGGGAGACCCAGATCTAGGGTTACCCCCG
AAACAACTGCCACATGGAGGAAGAGGGGCACACCATCTGCAACTGCCGACGCACCCAAGCAGTTTCCATCGCCACATAGC
TCTCACGAGGACGCCTTCAAGAAGGACACGATGCCAAGAGCGCCATCGCCGCCCTAGGGTTTTCACCCGAGAGACCATAA
GGTGGGAAAGGTAGGGCAGACCTGAACGACGTCTCCAGGAAGAAAAACGACACCCTCAGGTGTCGTCGTCGTCGCGACTG
GCAGGAGCCGACCTGGGAATTATCCCAATCTGGATCCCCACCTCCCACTCCATTGGAACCCGGTAACCAGCTAGTAGCAC
GACCATGTCCGGTAAGATGGAGTGCACGCAACATGGGTTGGAGGAAGGAGCAGCTCGGCGCCGTTGGCCGCCGGGGCAGC
AAACCGTGACACCAACCCACCGGTGAATTGCCGGCCACCTGGTTCAATCCCTGGCAGCCCAACCGCCCTGCCGCGCCACC
GGATGGGGATGACTCAACAAATGGACCGTCGACCCTGATCCATGGATCACAACCGCCGTACTAGTGACGAGCCACCGGTG
AAGGTCCCCCCGCCTTCCTCGGAGCCATCCAGACTTTGCCGGAAAGCGCCTCGGGCGATGGTGAGGGGAGGAAGGTGTGG
AGGAGGAAGAGGCGTTGGGATGAGGTGGCGCGAAGGAGGGATCCATCTGCATGATTGAAGTTGAATAGATTGGAAGTTTC
TCACAAAAAAAGCACCAAGCAAAGTGTGTCATCC-TCTGTTTCTAGATGAGAGAAGTGTATCAGAGGCTGCCTAGGGCAT
AAACCATTTCAAAAGAATCATGTTGGTCCTCTCGACCTTGAAACAGGCTTTCGCCCCGCTTTATATATAAAGCAACAA--
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>chr4D_572
TT------------------------------------------------------------------------------
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---------------CCCAAGGGAATCAAAACTCACTGGATCCTCACGATCCCTACCACCCATTTCTAAGCCACATCCTC
ACGAAGACAAGTCAACGAGTCATGAAATGCCGCGAACCAGCAATCTGTAGCAACT---AG--------------------
--------------------------------------------------------------------------------
---------CAAGTAGCAAGATATGCAAGATATGCCCATCCCTCTCTGGCCATGTGCATGGACCCTTGGCTGATTCAGCA
ATGGCTCCGTCCACGGCCTCATTCTAGTGTCGACGTCCGGCATTGCACGCAATCCAATTAAGCAGTCAAAGAAAGGCAGC
ACACTCGCACTCGTTATAAGCTCCCACCATTCGCCACATACATGGCAAGCTCAATCGT-------TAGCACCATGGCACT
TTGCAGAGCGCGCAGCGGGCTGCTGCTTCTCGCCATGGCCCTGCTCCCTCTGGGCATGGCCACGGACGCCATCGGCAGTA
ACTGCGCCGGAACCAGGTACGCTGGCAGCGGCAAGGCCAACATCGACTCCGTCCTGGCGGACCTCGTCGCCAAGGGCTCC
TCGGGAGGCTTCGCCATGGCCGTTGCCGGCAAGGGTAATAGCACCGTCGTCTACGGCCTCGCGCAATGCCGCGGCGACGT
CTCCGCCAGCGACTGCTCCGCCTGCCTCGCGGACGCCGCCAAGCAGCTCCCCGCCGCCTGCAGCTACCAGTCCGACGCCA
GAATATGG------------------------------------------------------------------------
---------------------------------TACGACTTCTGCTTCATGCGGTACGATAACACAGACTTCGCCGGGCA
GTCGGACACGGGCGCCGGCGTGATCCTGGTGAACGTGCAGGCGGCCGACGACCCCAAGCCGTTCAAGAAGGCGGTGGGGA
AGGTGATGAACAAGGCGACGGCGCAGTCGTCGGCGTCGGGCCGCGCGGGGCTCGGCAGGTCCAAGGACCAGTACACGCCA
TTCGTCACCATCTACGGCCTGGCGCAGTGCACGCGGGACCTCGCGCCGCTGGCGTGCGCGCAGTGCGTCTCGGTGGCGCT
GTCCAAGTTCGGCGACTACTGCGGCGCGCAGCAGGGCTGCCAGATCAACTACAGCAGCTGTAGGGTGCGCTACGAGATCT
ACCCCTTCTACTTCCCGCTCGACGGCGCCGATGGCCGCGCCACCACCGATATGACGAAATACACCAAGATCGTCGTGCAC
GCTTGACGTAGAGGCTCCTTGCACATGTCCGATGTGCTTCATGC------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS--S-----S------S-----SS----------------------S-----S--SSS-SSS--SSSS-S
S-SSSSSSSSSSSSSSS--S--S------S-----------------------------------S--------------
-S------S-------S-------------------------------------S---------S-S-------------
--S-------------------------------------------------------SSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS----S-------------S----------------------------------------------------
-------S-------------------------------------S----------------------------------
-----------S---------------------------------------------S----------------------
--------------------------------S-----------------------------------------------
----------S---------------------------------------------------------------------
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-------------------S--------------------------------S-S-------------SS----------
--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------SS-------------------
-------------------------S------------------------------------------------------
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----------------------------------------------------S---------------------------
------------------------------------------------------------S-------------------
------------------------------SS------------------------------------------------
--------------------------------S-----------------------------------------------
----S----------------------S-----------------------S--S-------------------------
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------------------------------------------------S----------------S--S--SSS-S-SSS
S-SSS-SSSS-SSSS-SS-SS--S-S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S----S-S-----S--SSSSSSSS--------
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-------------------------------------------------------SS---S------------------S
---S-----S-SS---------------------S------------------------------------S-----SS-
-------S------------------SS---S------SS---S----------SS----------SS----S-----SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS
>forward_59
---------------------------------------AATGTCTCTCCTGGTTGCGG---------------------
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>reverse_1439
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------------------------------------------------------------------------------TA
AGCTTGGCTGGCCTGTAC--------------------------------------------------------------
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>forward_133
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---------------------------------AAGAACGCACTCGATGAGCA---------------------------
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>reverse_1443
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--CTTGGCTGGCCTGTACGTAC----------------------------------------------------------
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>forward_234
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------------------------------------------------------AGGTCCAGCATCGGTTCATG------
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>reverse_2425
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------------------------AGACGCACAAAAACACGACG------------------------------------
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-----------------
