>input_sequence_65469
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----------------------------------------ATGGAGGCGCCGGACGAGGAGGCCGGCCTGGGACTCCCGG
AGGACGAGCGGCTTCTGGAGGTCACCATCATCTCCGCGCAGGGGCTGAAGCCGCCTTCTGGACTTCGGCGGCGGTTGCAG
GCGTACGCCGTGGCGTGGGTTGACACCGCGCACAGGCTCCAGACGCAACCCGACCGCTCTGGCGGCCCCGATCCGGCTTG
GCACGAGCGGTTCCTCTTCCGCGTGCACGAAGCCGCGCTCGCCGAGGATTCCCGCGCTGCCGTCACCGTGGAGATCTACG
CCTCACCGAACGGGGCCTGGCACATCGGCGGGGACTCCCTGATCGGATCCGCGCGGTTCCTCCTCGGCGACAACTGCCTC
CTGTCCCGCCCCGTTGGGTCCCCAGCCATGTTCGCCGTCGGCGTCCGACGCCCCTCCGGCCGCGTCCACGGCCTCCTCAA
TGTGGCTGCTAGCCTGGTCGCTGCGCCGCCCTCTCCGGCGGCCTCCCACGCCCTCAGCTTCTCCCCCGCCGTCTCTCTCA
GCGGCCTACCCCCTGCCGTCGCCATCAGCAGCCTCTCCACGGCGCCGATCTCAGGCCGCGTGCTGCGCGTCCTCAACCGC
GCGCACCCAACACCCCCACCTTCTCCTAAGGTGCTCACACCCAAGAAGCTGCAGGCCTCGGTGAAGCCTAACAATAAGGG
ATCTGACAACCAGCAGGTTGCGGTGAAGCTAAGTAACAAACGTGAAGACGATGCCAGCGATCAGGAGGGGGAGGATGAGA
ACACGTACATGGGCGGGGTGATGTTTTGCGGGCCTTGTGTCTTACCATTCCCGAGAAAGATTCACACCAGCCCCTCTGAC
GAGAACCTGCAGGCCTTCGCTGGCATCTTCTCTAGCGGCGTCGGCATTGCCAGGCGGAGCCCGGGCCCTCGGCACTGA--
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>chr3B_1_TraesCS3B01G267500
AAAAGATCGCCAGATCTTGCTCGAATTTGTCGGCTAGAGATCAGCGGGGCTGCGGGGTGTTGGCGATGACGTGCGGTGGT
CGGTAGAGGCAATGTCATCAGCACCAGAGTGGATGTGGCTGAGAGGGGCGGAGCGGTGGGCAAGGATGAAGAAGAAAAAA
ATTATACTCATCGTGGCCATAGAGGAGTAAATATAAGGTGCCGAATGGTTTGAGGAGTAAATTTTTATCCCTTTAAAGGA
TATAAGGGGTCGATTAGGAACGATTTAATTTTTTTTGCAAGCATCTAGCGGGTGCCCGTTGGCCCGCTAGCGCTTCTAGA
GTGGCCGATCCAAAAAGTTAATATTGTGGCCCCCTAATTATAAATGAAAATAGTTTGCCGCTCGAAACTCATATTAGGAA
AAGTGAACATGTGTGAATAGAAAGAACAAAAATAATTACAAAGCACCCATATGAGGGGTCTGGTTTTAAAAATATCGTCA
TAAGGAATCCAACAGTGAAGACGGATCTGAATTCCGACCCACGGTCTGAAAGATATGCCTTTTTAAAATTTTGAAAGAAA
TAAATACACATAAATATGGTTTTCCGTTCTGATTCGATTGGTGTAAGTATATTTAGTGCGAACAAGCACATGGAGTACTA
GCATAAAAAAAGTATATATGATTTAAATTTCTTTTTTACACTCCTCTTCAGCTTTTGAAGTGATCGGTTAGAAAGATGTG
CTCAAAGGGGATGATGGAATTGCAGATGCTCTCACATTTGTCAATCACATCTCAAACCGCGCAGACTCCCGCTCACACGC
CCAATCAATCACCACCCGTTGGCAGGACTCCTTCATAACCATCGGATCGCACGATACCTGCTCGCATCCACCGTTCGTTC
AAAATCCCACTGAGACGACCGAAGGGGGAGAGGGGGGCGAGCCTCAAATCTCGCCGCCGCCTCGTTTCGCGAGCCCTCTC
TTCCCCGAGCAAGAAACCCTAGCGCCGCCGCTCGCCGGCGATGGAGGCGCCGGACGAGGAGGCCGGCCTGGGACTCCCGG
AGGACGAGCGGCTTCTGGAGGTCACCATCATCTCCGCGCAGGGGCTGAAGCCGCCTTCTGGACTTCGGCGGCGGTTGCAG
GCGTACGCCGTGGCGTGGGTTGACACCGCGCACAGGCTCCAGACGCAACCCGACCGCTCTGGCGGCCCCGATCCGGCTTG
GCACGAGCGGTTCCTCTTCCGCGTGCACGAAGCCGCGCTCGCCGAGGATTCCCGCGCTGCCGTCACCGTGGAGATCTACG
CCTCACCGAACGGGGCCTGGCACATCGGCGGGGACTCCCTGATCGGATCCGCGCGGTTCCTCCTCGGCGACAACTGCCTC
CTGTCCCGCCCCGTTGGGTCCCCAGCCATGTTCGCCGTCGGCGTCCGACGCCCCTCCGGCCGCGTCCACGGCCTCCTCAA
TGTGGCTGCTAGCCTGGTCGCTGCGCCGCCCTCTCCGGCGGCCTCCCACGCCCTCAGCTTCTCCCCCGCCGTCTCTCTCA
GCGGCCTACCCCCTGCCGTCGCCATCAGCAGCCTCTCCACGGCGCCGATCTCAGGCCGCGTGCTGCGCGTCCTCAACCGC
GCGCACCCAACACCCCCACCTTCTCCTAAGGTGCTCACACCCAAGAAGCTGCAGGCCTCGGTGAAGCCTAACAATAAGGG
ATCTGACAACCAGCAGGTTGCGGTGAAGCTAAGTAACAAACGTGAAGACGATGCCAGCGATCAGGAGGGGGAGGATGAGA
ACACGTACATGGGCGGGGTGATGTTTTGCGGGCCTTGTGTCTTACCATTCCCGAGAAAGATTCACACCAGCCCCTCTGAC
GAGAACCTGCAGGCCTTCGCTGGCATCTTCTCTAGCGGCGTCGGCATTGCCAGGCGGAGCCCGGGCCCTCGGCACTGAGC
CTATGCAAAACAGGTTCATTCTTTCAGTCGTTTACTTGATCTGTTGTGGAGATAATCTGTTTCTTGTTCTTGTGGGTAAT
TAGTTTGTTGACACTGAGGATACAGTATCACTTGTATCATAAGTTCATAACATCTCTTGCTATTATTGCAAGTATAGTAC
ACCA-TTTTTGTGTATGAATTCAGTGGAATTGTTGAGTGTTAGCTCTGCAAAAACTGACCCAGACCTTCAAGGAAGTGTG
GAGTGTTATTCTGTCTTCTGGGCTTGATATTGGAAGATACCTGCTTCTTGTTTATATTGGATTTCAATGGGAGCAATACT
CACATGCATCGAACAAGTCTGATTATTTCCGTCCATCCTGACAGGATTTGTGGGTGTTACCTTTTTGTTTCATATGTATA
AGTCGTCAATTACATCACTGTCGCAGAATTTTGAAGTTAGTAAATGCATGCCCCGTTTAGCTTTCTTGATGTGGCAGCTG
TAATTGCACAGTTGTGTTGGATGGCAGTGCCATTTCAATCTCAGATTGTGAAATCTCTGTTCAAATGATAAATGGAGCTT
TGGGTGACATAGTAGTATCTATTTTCATATGATAGCTGTGATTTATGTTCCTGCTGTTTTTGTTCTGGG-----------
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-----------------------------------------------------------AGGTCAAGCTTGTCGGCCAAT
CACTACATGGCCAGTTGGCAATTCCTGTTTGGTTCTTTATTTAC-TGCTGAAATGCTGTATTCCGTCATGTGAATTTCAA
TGTAGAACACTATAATATCTCAAATTCTCAATGGTCTGGCGTTGATAGCATCGCTGGTTTGTCACCGTCAATGTGTTGTA
TGCCCCTGTCATAGGAATTGAGCAAGCATCATTTAAATTTAGCTTGTTCTATGGACATGATACATACTGACTCCGTCTAT
AGTACTACTACTAAGTGGCCTATAAACAGACAGAGGGAGTATTATTTACTGATGATTATTCCATTCATGCATCAAGACTC
AAGGATAATTGACCACTCATTCATAGATTA
>chr3D_662
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---------------------TTTAGATTTCTTTTTTTAT-TCCTCTTCAGCTTTTGAAGAGATCGGTTAGAAAGATGTG
CTCAAAGGGGATGATGGAATTGCAGATGCTCTCACAATTGTCAATCACATCTCAAACCGCGCAGACTCCCGCTCAGACGC
CCAATCAATCACCACCCGTTGGCAGGACTCGTTCATAACCATCGGATCGCACGATACCTGCTCGCATCCACCGTTCGTTC
AAAATCCCACTGAGACGACCGAAGGGGGAGAGGGGGGCGAGCCTCAAATCTCGCCGCCGCCTCGTTTCGCGACCCCTCTC
TTCCCCGAGCAAGAAACCCTAGCGCCGCCGCTCGCCGGCGATGGAGGCGCCGGACGAGGAGGCCGGCCTGGGGCTCCCGG
AGGGCGAGCGGCTTCTGGAGGTCACCATCATCTCCGCGCAGGGGCTGAAGCCGCCTTCTGGACTTCGGCGGCGGTTGCAG
GCGTACGCCGTGGCGTGGGTTGACACCGCGCACAGGCTCCAGACGCAACCCGACCGCTCTGGCGGCCCCGATCCGGCTTG
GCACGAGCGGTTCCTCTTCCGCGTGCACGAAGCCGCGCTCGCCGAGGATTCCCGCGCTGCCGTCACCGTGGAGATCTACG
CCTCACCGAACGGGGCCTGGCACATCGGCGGGGACTCCCTGATCGGATCCGCGCGGTTCCTCCTCGGCGACAACTGCCTC
CTGTCCCGCCCCGTTGGGTCCCCAGCCATGTTCGCCGTCGGCGTCCGACGCCCCTCCGGCCGCGTCCACGGCCTCCTCAA
TGTGGCTGCTAGCCTGGTCGCTGCGCCGCCCTCTCCGGCGGCCTCCCACGCCCTCAGCTTCTCCCCCGCCGTCTCTCTCA
GCGGCCTACCCCCTGCCGTCGCCATCAGCAGCCTCTCCACGGCGCCCATCTCAGGCCGCGTGCTGCGCGTCCTCAACCGC
GCGCATCCAACACCCCCACCTTCTCCTAAGGTGCTCACGCCCAAGAAGCTGCAGGCCTCGGTGAAGCCCAACAATAAGGG
ATCGGACAACCAGCAGGTCGCGGTGAAGCCAAGTAACAAGCGTGAAGACGATGCCAGCGATCAGGAGGGGGAGGATGAGA
ACACGTACATGGGCGGGGTGATGTTTTGCGGGCCTTGTGTCTTACCATTCCCGAGAAAGATTCACACCAGCCCCTCTGAC
GAGAACCTGCAGGCCTTCGCTGGCATCTTCTCTAGCGGTGTTGGCATTGCCAGACGGAGCCCGAGCCCTCGGCACTGAGC
CTATGCAAAACAGGTTCATTCTTTCAGTCGTTTACTTGATCTGTTGTGGAGATAATCTGTTTCTTGTTCTTGTGGATAAT
TAGTTTGTTGACGCTAAGGATACAGTATCACTTGTATCATAAGTTCATAACATCTCTTGCTATTATTGCAAGTATAGTAC
ACCATTTTTTGTGTATGATTTCAGTGGAATTGTTGAGTGTTAGTTCTGCAAAAAGTGAGCCAGGCCTTCAAGGAAGTGTG
GAGTGTTATTCTGTCTTCTGGGCTTGATATTGGAAGATACCTGCTTCTTGTTTATATTGGATTTCAATGGGAGCAATACT
CACATGCATCGAACAAGTCTGATTATTTCCATCCATCCTGACAGGATTTGTGGGTGTTACCTTTTTGTTTCATATGTATC
AGTCGTCAATTACATCACTGCCGCAGAATTTTGAAGTTAGTAAATGCATGTCCCGTTTAGCTTTCTTGATGTGGCAGCTG
TAATTGCACAGTTGTGTTGGGTGGCAGTGCCATTTCAATCTCAGATTGTGAAATATCTGTTCAAATGATAAATGGAGCTT
TGGGTGATATAGTAGTAGCTATTTTC-TATGATAGCTGTGATTTATGTTCCTTCTGTTTTTGTTTTGGAAGGTCAGCTTG
TCGGCCGGTCACGGGTTCGAGTCCTGGAAACAGCCTCTTGCAGAAATGTAGGGAAAGGCTGCGTACTATAGACCCAAAGC
GGCCAGACCCTTCCCCGGACCCTGCGCAAGCGGGAGCTACGTGCACCGGGCTGCCCTTTAGGTCAAGCTTGTCGGCCACT
CGCTACATGGCCAATTGGCAATTCATGTTTGGTTCTTTATTTACTTGCTGAAATGCTGTATTCCGTCATGTGAATTTCAA
TGCAGAACACTATAATAT--------CTCAATAGTCTGGCGTTGATAGCATCGCTGGTTTGTCACCCTCAATGTGTTGTA
TGCCC-TGTCATAGGAATTGAGCAAACATCATTTAACTTTAGCTTGTTCTATGGACATGACACATACTGACTCTGTCTAT
AGCACTACTACTTAGTGGCCT-----CAGACAGAGGGAGTATTATTTACTGATGATTATTCCATTCATGCATCAAGACTC
AAGGATAATTGACCACTCATTCATAGA---
>chr3A_716
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---------------------------------------------------------------------------ATGTG
CTCAAA-GGGATGATGAAATTGCAGATGCTCTCACATTTGTCAATCGCATCTCAAACGGCGCAGACTCCCGCTCAGACGC
CCAATCAATCACCACCAGTTGGCAGGATTCCTTCATAACCATCGGATCGCACGATACCTGCTCGGATCCACCGTTCGTTC
AAAATCCCACCGAGACGACCGAAGGGGGAGAGGGGGGCGAGCCTCAAATCTCGCCGCCGCCTCGTTTCGCGACCCCTCTC
TTCCCCGAGCAAGAAACCCTAGCGCCGCCGCTCGCCGGCGATGGAGGCGCCGGACGAGGAGGCCGGCCTGGGGCTCCCGG
AGGGCGAGCGGCTTCTGGAGGTCACCATCATCTCCGCGCAGGGGCTGAAGCCGCCTTCTGGACTTCGGCGGCGGTTGCAG
GCGTACGCCGTGGCGTGGGTTGACACCGCGCACAGGCTCCAGACGCAACCCGACCGCTCTGGCGGCCCCGATCCGGCTTG
GCACGAGCGGTTCCTCTTCCGCGTGCACGAAGCCGCGCTCGCCGAGGATTCCCGCGCTGCCGTCACCGTGGAGATCTACG
CCTCACCGAACGGGGCCTGGCACATCGGCGGGGACTCCCTGATCGGATCCGCGCGGTTCCTCCTCGGCGACAACTGCCTC
CTGTCCCGCCCCGTTGGGTCCCCAGCCATGTTCGCCGTCGGCGTCCGACGCCCCTCCGGCCGCGTCCACGGCCTCCTCAA
TGTGGCCGCTAGCCTGGTCGCTGCGCCGCCCTCTCCGGCGGCCTCCCACGCCCTCAGCTTCTCCCCCGCCGTCTCTCTCA
GCGGCCTACCCCCTGCCGTCGCCATCAGCAGCCTCTCCACGGCGCCGATCTCAGGCCGCGTGCTGCGCGTCCTCAACCGC
GCGCACCCAACACCCCCACCTTCTCCTAAGGTGCTCACGCCCAAGAAGCTGCAGGCCTCGGTGAAGCCTAACAATAAAGG
ATCGGACAACCAGCAGGTTGCGGTGAAGCCAAGTAACAAGCGTGAAGACGATGCCAGCGATCAGGAGGGGGAGGATGAGA
ACACGTACATGGGCGGGGTGATGTTTTGCGGGCCTTGTGTCTTACCATTCCCGAGAAAGATTCACACCAGCCCCTCTGAC
GAGAACCTGCAGGCCTTCGCTGGCATCTTCTCTAGCGGTGTTGGCATTGCCAGACGGAGCCCGAGCCCTCGGCACTGAGC
CTATGCAAAACAGGTTCATTCTTTCAGTCGTTTACTTGATCTGTTGTGGAGATAATCTGTTTCTTGTTTTTGTGGATAAT
TAGTTTGTTGACGCTGAGGATACAGTATCACTTGTATCATAAGTTCATAACATCTCTTGCTATTATTGCAAGTATAGTAC
ACCATTTTTTGTGTATGAATTCAGTGGAATTGTTGAGTGTTAGTTCTGCAAAAAGTGAGCCAGACCTTCAAGGAAGTGTG
GAGTGTTATTCTGTCTTCTGGGCTTGATATTGGAAGATACCTGCTTCTTGTTTATATTGGATTTCAATGGGAGCAATACT
CACATGCATCGAACAAGTCTGATTATTTCCATCCATCCTGACAGGATTTGTGGGTGTTACCTTTTTGTTTCATATGTATA
AGTCGTCAATTACATCACTGCCGCAGATTTTTGAAGTTAGTAAATGCATGTCCCGTTTAGCTTTCTTGATGTGGTAGCTG
TAATTGCACAGTTGTGTTGGGTGGCAGTGCCATTTCAATCTCAGATTGTGAAATATCTGTTCAAATGATAAATGGAGCTT
TGGGTGATATAGTAGTAGCTATTTTCATATGATAGCTGTGATTTATGTTCCTTCTGTTTTTGTTCTAGAAGGTCAGCTTG
TCGGCCGGTCACGGGTTCGAGTCCTGGAAACAGCCTCTTGCAGAAATGTAGGGAAAGGCTGCATACTATAGACCCAAAGC
GGTCAGACCCTTCCCCGGACCCTGCGCAAGCGGGAGCTACGCGCACCGGGCTGCCCTTTAGGTCAAGCTTGTCGGCCAAT
CGCTACATGGCCAATTGGCAATTCATGTTTGATTCTTTATTTACTTGCTGAAATGCTGTATTCCGTCATGTGAATTTCAA
TGCAGAACACTATAATAT--------CTCAATGGTCTGGCGTTGATAGCATCGCTGGTTTGTCACCCTCAATGTGTTGTA
TGCCCCTGTCATAGGAATTGGGCAAACATCATTTAACTTTAGCTTGTTCTATGGACATGATACATACTGACTCTGTCTAT
GGTACTACTACTAAGTGGCCTATAAACAGACAGAGGGAGTATTATTTACTGATGATTATTCCATTCATGCATCAAGACTC
AAGGATAATTGACCACTCATGCATAGATTA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS----S-----------SSSS-------------------S-------------------
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---S----------------------------------------------------------------------------
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--------------------------------------S-----------------------------------------
---S-------------------------S---------S----------------------------------------
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--------------------------------------S--S-----------S---------S----------------
---------------------------------------------------------------------------S----
------------S-------------------------------------------------------------------
-------------------------------------------S----------S---S---------------------
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------------------------------S-------------------------------------------------
--------------------S-----------------------------S-----------------------------
--------------------S---------------------------------S-------------------------
-------S---------S----------------------------------S---------------S-----------
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-S-----------S----------S-------------------------------------------------------
--S---------------SSSSSSSS----------------------------------------S-------------
-------------------------S----------S------------------------------------S------
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>forward_326
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------------------------------------------------------------------CTAGCGCTTCTAGA
GTGGCC--------------------------------------------------------------------------
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>reverse_2135
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------------------------------------------------------CTGACCCAGACCTTCAAGGA------
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