>input_sequence_65447
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----------------------------------------CCAAGCAGCCTCCTTTGTCTCTCTCTGTGGAGGCGGCGGC
GG-CGGCGGCCGGCGGCGAGGCGATGAGGGCGGTCACCGGCGCCATCGTCTCCTCCAAGCCGTGCTCGCTTCTCAAGGCC
AAGGTCATCCTCGACGGATTCCACAAGAGCTCCGCCTCCAACCTCCCCTCCTCCGACGCAGGCACATACCTCCGCACCGC
CGCCGACGCCGTCGACGAGCTCCGCGAGTTCCGCCGCGACCTACTCAGGGCCCAGCACCAGCAC------GAGGTCAAGG
TCA-----------------------------------------------------------------------------
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-----------------------------------------------------------AGGTGGATGTGGAGGGGGACC
TTGTTCA---------------------CAGTGAGAGGAAGCGGAGGAACAAGGAAGAGAGGCGTGTCGTCAAGCAGGAG
GAGCAACATGTCCCTTCTTTGATCCAACTCCAACAGGAGGAGGAGGCGGCGGTGGTGTCCAAAGTAGGGATCAGTTTGGT
TCCCAGGAAGAAGAAGAAGGAGGAGGAGGAG------AAAGACATCGTCATCATCAAGCAGGAGGCAGAGGAGGAGGAGG
AGGAGCCGGAGCAGCTCAAGAAGAAGCGGAAGCATGCCGCGCAAGAGTTGGTCCAGGTGAAGAAAGAACAAG---TTGAT
TTCGTCGATGCCGATTTGGGGAGCGACAAGAAGAAGAAGC---ACAAGAAAAACAAGAGGAGCAGAGATGGCGACAACGA
CGCTCAAG---------AAGAAGGAAAGGTGGAGCATACCAAGAAGAAGCAGCGCAAGTAGAAGTAATCTTGG-------
-------AGGTTAGGCTTTAGAAGAAGAACCCATACTGCTTGCAAGCAAATGTGTCATGAGGAGGA---TATTTTCGATG
ATTG----GAA-CGGTGAGGTTGATTTAGCTGTCTGTCGCATGTTAGGCTTTATTATTGTACAATTGAGGCTGTTGTGGT
CTTTTAAAGACAGGCCACTCTGCTAGACTCTGTTTT-GTGA-----CACCTG----------------------------
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>chr3B_1_TraesCS3B01G001400
CACGCCGTTGTGCTGCTGCTGGATGGAGTCTTCCTCAACCTCTCCCTCTCTCCTTGCTGGATCAAGGCGTGGGAGACATC
GTCGAGCTGTACGTGTGTTGAACGCGGAGGTGCCGTCCGTTCGGCACTAGGATCATCGGTGATCTGAATCACGACGAGTA
CGACTCCATCAACCCCGTTCACTTGAACGCTTCCGCTTAGCGATCTACAAGGGTATGTAGATGCACTCTCCTTTCTACTC
GTTGCTGGTCTCTCCATAGATAGATCTTGGTGTTACGTAGGAAATTTTTTGAATTTCTGCTACGTTCCCCAACAACTTGA
TGCGCTCTTAGCCGCCGCCACGTGTCGCGCTATGAGCACTTCCTCTTGATTTTGTATTTTTTTCGCATGCGTTTTTGGTT
TTTTAGATGTTTTTTTTTGGTTTTCCACCGGTCTCTCTTAGCTTTTGGAGGAAAAATATTCAATTTTTTCGCGAAAAAAC
GTGTTTCCTTTTTTCTTTTTCTTCCGTGTGAGACATGGTTTTGCTTTCGCGAGAGGCACAACCATGCCAATCGGAAACGG
GAAAAATGTGTTTTTCATTTTTTTTTTCGGGAGAGGCACGGTTTTCCTTTTGGGAAGGCATGGTTTTGTTTCTGCAAGAG
GCATGGTTTTCCTTTTGGGAAGGCATGGTTTTGTTTCCGCGAGAGGCACGGCTCTTGAAAACAAAAAAAACATGTTTTTT
TTTTCCTTCCGTGAGAGGCAACGTTTTGAATAAACTGATCCATGTAAAAGAAAAAACTCCCCGGTTGCGACAAGTGGCGC
ACACATGCAGCGCACCACTTGCCGTAACCTAAGGAGGTGAAAGTGATCGTTCAAAGGAGTACTTGTCAATTAGTGATTTC
GATAAACAAGAGGTGTTTTAGTTTTTTTTTTTTTGAGACACAGNNNNNNNNNNTTGTCCATCGGCCCGACAAAACCAAGA
AGCAAGCAAGCAACCCTAGGACTAGGAGTGAACCAACCAACCAAGCAGCCTCCTTTGTCTCTCTCTGTGGAGGCGGCGGC
GG-CGGCGGCCGGCGGCGAGGCGATGAGGGCGGTCACCGGCGCCATCGTCTCCTCCAAGCCGTGCTCGCTTCTCAAGGCC
AAGGTCATCCTCGACGGATTCCACAAGAGCTCCGCCTCCAACCTCCCCTCCTCCGACGCAGGCACATACCTCCGCACCGC
CGCCGACGCCGTCGACGAGCTCCGCGAGTTCCGCCGCGACCTACTCAGGGCCCAGCACCAGCAC------GAGGTCAAGG
TCA-----------------------------------------------------------------------------
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-----------------------------------------------------------AGGTGGATGTGGAGGGGGACC
TTGTTCA---------------------CAGTGAGAGGAAGCGGAGGAACAAGGAAGAGAGGCGTGTCGTCAAGCAGGAG
GAGCAACATGTCCCTTCTTTGATCCAACTCCAACAGGAGGAGGAGGCGGCGGTGGTGTCCAAAGTAGGGATCAGTTTGGT
TCCCAGGAAGAAGAAGAAGGAGGAGGAGGAG------AAAGACATCGTCATCATCAAGCAGGAGGCAGAGGAGGAGGAGG
AGGAGCCGGAGCAGCTCAAGAAGAAGCGGAAGCATGCCGCGCAAGAGTTGGTCCAGGTGAAGAAAGAACAAG---TTGAT
TTCGTCGATGCCGATTTGGGGAGCGACAAGAAGAAGAAGC---ACAAGAAAAACAAGAGGAGCAGAGATGGCGACAACGA
CGCTCAAG---------AAGAAGGAAAGGTGGAGCATACCAAGAAGAAGCAGCGCAAGTAGAAGTAATCTTGG-------
-------AGGTTAGGCTTTAGAAGAAGAACCCATACTGCTTGCAAGCAAATGTGTCATGAGGAGGA---TATTTTCGATG
ATTG----GAA-CGGTGAGGTTGATTTAGCTGTCTGTCGCATGTTAGGCTTTATTATTGTACAATTGAGGCTGTTGTGGT
CTTTTAAAGACAGGCCACTCTGCTAGACTCTGTTTT-GTGA-----CACCTGATCATTATGCAATGCCATTGTCGCAACA
GAACTAGTGACCTACTG-----ACTTATTTGTCCAT--------------------------------------GCTTAT
GAGGATGTGTATGACCTTTC-----------CCACTTATTGGAGCCTGTTAA----CAGGTGCCATAGGTGAGATTTCTC
TCACCTTCAGATT-AGCATTTGGAATCATACTAGTATCTATTTGGTTTAACTCAAGTA---CTTAGTGCAGCA-------
--------TCATCTCTTCACCTGCCCTCTAATCGAGCGTGTCATCTTGCAAACCAGCTGTGTGTAAAATAATGTGTCACG
AATGATAATGAATTCATAGGTTC--------------------CCCTGAGATGCCTCAGTTCCA------TACTATGCTT
AGTTGCTTACGCTACTGTTAGTTAGTGGCCTTACTCATCTGTGCTTGTGATGTTTGTAGTGAAATCTACTTATTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNCAAGTTAAGTTATACAGAAACATTCAACCGAGTGCTTAATGCAGCATTATTTCCTCGCTACTTGTC
TTTACATCTATCCGCAGATCAAGTGTGTCATTGTATGAAAAATAATGTAGCATGACTGATATAATTTTCAGTAAGTTACA
GTTTGGACCATGAGCCAGCTCTGAGCCTGAAAAACAAACACGGGCAG-----TCGCTGATTCGGTGCTGTCTTGCAGCTG
ATTCAGTCTGTGTTTTGCCTCAATAGTCATACACTGATAACATTTGTGCATGAGATGATTTTCCTTGCTGACAGCTGACA
CACCTGTCTGAGTTAGTCAACCGTGGTCACCGTGTCCAGT
>chr3A_991
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------------------------------AACCAACCAACCAAGCAGCCTCCTTTGTCTCTCTCTGTGG---------C
GG-CGGCGGCCGGCGGCGAGGCGATGAGGGCGGTCACCGGCGCCATCGTCTCCTCCAAGCCGTGCTCGCTCCTCAAGGCC
AAGGTCATCCTCGACGGATTCCACAAGAGCTCCGCCTCCAACCTCCCCTCCTCCGACGCAGGCACATACCTCCGCACCGC
CGCCGACGCCGTCGACGAGCTCCGCGAGTTCCGCCGCGACCTACTCAGGGCCCAGCACCACCACCAGCACGAGGTCAAGG
TGA-----------------------------------------------------------------------------
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-----------------------------------------------------------AGGTGGATGTGGAGGAGGATC
TTGTTCACAGCCCTTGTGCCGCTGCCGCCAGTGAGAGGAAGCGGAGGAGCAAGGAAGAGAGGCGTGTCGTCAAGCAGGAG
CAAGATGTCC------CTTTGATCCAACTCCAACAGGAGGAGGCGGCGGCGGTGGTGTCCAAAGTAGGGATCAGTTTGGT
TCCCAGGAAGAATAAGAAGAAGA---AGGAGGAGGAGAAAGACATCACCATCATCAAGCAGGAGGCAGAGGAGGAGGAGG
AGGAGCCGGAGCAGCACAATAAGAAGCGGAAGCATGCCGCACAAGAGTTGGTCGAGGTGAAGAAAGAAGAAG---CTGAT
TTCATCGATGCCGATTTGGGGAGCGACAAGAAGAAGAAGAAGAAGAAGAAAAACAAGAGGAGCAGAGATGGCGACGACGT
C---CAAG---------AAGAAGCA------GAGCATACCAAGAAAAAGCAGCGCAAGTAGTAATAATACTCTCTGGGAG
GGAGGTTAGTTTAGGCCTTGGAACAAGAACCCATACTGCCTACTTGCAAATGTGTCATGAGGAGGAAGATATTTTCAATG
ATTTAGAAGAATCGGTGAGGTTGATTTAGCTGTCTGTCGCATTTTAGGCTTTATTATTCTAGTACAATTGGA------GG
CTGTTAAAGACAGGCCACTCTGGTGGACTCTGTTTT-GTCTTGTGGCACCTCATCATTATGCAATGCCATTGTCTTGTTG
CAATGAAATTTACACTTTTGCTGTCCCCTGAAATGATTCACTAGTTTCATATTATGCTCACTCTACTGTTTGTGGCTTAT
GAGGATGTGTATGACCCCTTTGTAGTGAAATCCACTTATTGGAGCCTGTTAAATAACAGGTGCCATATATGAGATT--TC
CGACCTTCAGATTTAGCATTTGGAATTATACTAGTATCTATTTGGTTTAACTCAACTTCTTCTTAGTGCAGCATTATTGT
CCTGCTACTTATCTCTTCACCTGCCCTCTAATCAAGCATGTCATCTTGCAAACCAGCTGTGTGCAAAATAATCTGTCACG
AATGATAATAAATTCATAGGTTC--------------------C------------------------------------
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---------TTCAAATTAGATTGATAT------------ATATATATTGTTA----------------------------
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--------------CAAGTTAAGTTATACAGAAACATTTAACTGAGT--------CAGCATTATTAACTCGCTACTTGTC
TTCACATCTATCCACAGATCAAGTGTGTCATTGTATGAAAAATAATGTACCATGACTGTTATAAACTTCAGTAACTTACA
GTTTGGACCATGAGCC-----------TGAAAAACCAACACGAGCAATCGCTTCGCTGATTCAGTGCTGTCTTGCAGCTG
ATTCATTCTGTGCTTTGCCTCAATAGTCATACACTGATAACTGTTGTGCATGAGATGATTTTCCTTGCTGACAGCTGACA
CACCTGTCTGAGTAGTCAACC-------------------
>chrUn_995
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----------------------------------AAGCAACCAAGCAGCC-CCTTTGTCTCTCTCTGTGG---------C
TGCCGGTGGCCGGCGGCGAG-CGATGAGGGCGGTCATCGGCGCCATCGTCTCCTCCAAGCCGTGCTCGCTCCTCAAGGCC
AAGGGCATCCTCGCTGGGTTCTACAAGAGCTCCGCCTCCAACCTCCCCTCCTCCGACGCAGGCACGTACGTCCTCACCGC
GCTGAGC-CCGTCGACGACCTCCGCGAAATCCGCCGCGACCTCCTCAGGGC------CCATCAC------GAGGTCAAGG
TGGAGATGAAGACTGTTGCGATCCCCTATACTTTGTGGATTATCACGTGGCGGAGATGAAGTAGGCGATGATGCGGAGTC
TCTGGACACGTCGAGGTATCAAAGGGAGCATGGTGGCTGCGTTTATGGCGACTGCGCGACCATGGAAGCTTCGGCCATGG
CAGAAGCAGGGAAGGGAGAGCGAGGGGGGGCAGTGAAGGGATTGCGTCCGTGAGGCAGGCATGCTGCTGGTGGTGTGGCG
CGCGTGCGTGCGCCGTGTTTGGTCTTGCCTCTGCCTATAGGCAGAGGTTGAAGATGATCGGCACAAGTCAGCACAGTGCT
GGGCCGACCAGTGGGCCGCTAGGTAGGCCTTCCCTCTCTCTGCTTTTCTATTTTTTTTATTTCTCTGTTTTGATTTATTT
TTATTACTAAATCATTTTAGTAAATTCTGAGAAAAATAGTGGATGCAATATGGATTATTCCAGAGACCCTCTATAACTTT
TAGAATTATTGGAGCTATAGAAATATTTATAGGATTTTTATAACTCTAATTAAAATATAATATGAGTTAACTCAAAGTCC
ATAAATGCCATGGAAAAATGTGCATCATCTTTGGTTAAGGTTTTAACCTCTTTCCCTATATTATGGACATTTTTTAAGGG
CATTTTTGGTTCATTGAGAAATTTATTTTAGTTGAACCTAGTTTATTAATGTGATGCTAGGGTTTAGTGAATCCCCAATT
AAAACTCGTTGGCATGCATACCGTAGTAGAGTATTTTGTGGGCTGCGGCCCAAAATCGCAGCCCCATCAATCCATCTAAA
ACCAACCGACCCAACCCTAGGAGAGGAGAGGAGAGGATACCCTCCAACCAAGAAGCGTGTGTGGAGAGCGGCTGCCGGCG
GCGCGGCGGCGATGAGGGCGGTGACCGGCAGCATCGTGTCCTCGAAGAGCAAGCGGTGCTCGCTGTTGAAGGCCGAGTGC
GTCCTGGAAAGCTTCGGCGAGCGCAACTCGTCGGGCCTCCCCTCCTCCGACGCCGCCACCTACCTCCGCACCACCGCCGA
CGCCGTCCGCGACCTCCGCTTCTACCTCATCGACCTCCGCAAGCGCCTCCAGCTCCAACAGGTGGACGTGGACGTGGAGG
AGG---A---------------------CAGTGAGAGGAAGCGGAGGAACAAGCAAGAGAGGCGTGTCGTCAAGCAGGAG
------------------------------------GAGGAGGACGCGGCGGTGGTGTCCAAAGTAGGGATCAGTTTGCT
TCCCAGGAAGAAGAAGAAGGAGGAGGAGGAGGAGGAGAAAGACATCATCATCATCAAGCAGGAAGAAGAACAA-------
--------GAGGAGCACAAGAAGAAGCGGAAGCATGCCGCACAAGAGTTGATCGAGGTGAAGAAAGAAGAAGAAGCTGAT
TTCGTCGACCCCGATTTGGGGAGCGACAAGAAGAAG---C---AGAAAAAGAAGAAGAGGAGCAGAGATGGCGCCGATGA
CAATGGCAACGCCGCCCAAGAAGCA------GAGCATACCAAGAAGAAGCAGCGCAAGTAGTAATAATACTGTCT----G
GGAGGTTAGTTTAGGCCTTGGAACAAGAACCCATACTGCCTACTTGCAAATGTGTCATGAGGAGGA---TATTTTCAATG
ATTTAGAAGAA-CGGTGAGGTTGATTTAGCTGTCTGTCGCATTCTAGGCTTTATTATTCTAGTACAATTG-A------GT
CTTTTAAAGACAGGCCACTCTGGTAGACTCTGTTTTTGTCTTGTGACACTT-ATCATTATGCAATGCCATTGTCTTGTCG
CAATGAAATTACTGGCTTACTAACTTATCTGTCCAT--------------------------------------GCTTAT
GAGGATGTGTATGACCTTT-----------TCCACTTATTGGAGCCTGTTAA----CAGGTGCCATAGATGAGATT--TC
TCACCTTCAGATT-AGCATTTGGAATTATACTAGTATCTATTTGGTTTAACTCAAGTC---CTTAGTGCAGCA-------
--------TTATCTTTTCACCTGCCCTCTAATCAAGCGTGTCATTTTGCAAACCAGCTGTGTGCAAAATAATGTGTCACG
AATGAT-ATAAATTCATAGGTTCATCCGTGCCTCAGTTCCCCGCCTTGAGATGCCTCAGTTCCATACTATTACTATGCTT
AGTTGCTTACGCTACTGTTAGTGGCCTTAT----TCATCTGTGCTTATGATGTTTGTAGTGAAATCTACTTATTGGAGCC
TGTTGGTCCTTCAAATTAGAATTTGAAATTACACTATTGATATATATTGTTA----------------------------
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--------------CAATTTAAGTTATACAGAAACATTCAACCGAGTGCTTAATGCAGCATTATTTCCTCGCTACTTGTC
TTTACACCTATCCACAGAGCAAGTGTGTCATTGTATGAAAAATAATGTACCATGACTGATATAAACTTCAGTAAGTTACA
GTTTGGACCATGAGCCAGCTCTGAGCCTGAAAAACAAACACGAGCAG-----TCGCTGATTCGGTGCTGTCTCGCAGCTG
ATTCATTCTGTGTTTTGCCTCAATAGTCATACACTGATAACTTTTGTGCATGAGATGATTTTCCTTGCTGACAGCTGACA
CAGCTGTCTGAGTTAGTCAAC-------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------SSSSSSSSS-
----------------------------------------------------------------------S---------
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-S------------------------------------------------------------------------------
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--------------------------------------------------------------------------S---S-
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S-SS-SSSSSSSSSSS----------------------------------------------------------------
----------------------------------------------S---------------------------------
---------------S------------------------S------------S--------------S------S----
--------------------------------------------S------------------------------S----
-SS--------------------S-SSSSSS------------------------------S-S----SS--S-------
---------S------S--S---S---------------S-S-SS-------------------------------S---
---S--------------------------------------S---------------S--SS-SSSSS-SSSSSSSS--
----------------------S----------------SS----------S----------------------SSSS-S
S--SS-SSSSS-----S---------------------------------------------------------------
-------------------S------------------------------------------------S-------SS--
--------------------------S------------------------------S----------------------
---------S-----------------------S-----------------------------S----------------
---------S-----------------------------------S----------------------------------
----------------------SSSSSSSSSSSS------------S---------------------------SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS------------------------------------------------------------------
-------------S-----------------------------------S--------------SS--------------
------------------------------------------S-------------------------------------
-----S-----------------------------------S--------------------------------------
---------------------SSSSSSSSSSSSSSSSSSS
>forward_58
--------------------------------------CCTCTCCCTCTCTCCTTGCT----------------------
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>reverse_2681
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----------------------------------------GCAAGAGTTGGTCCAGGTGA--------------------
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>forward_680
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--------------------AGGCATGGTTTTGTTTCCGC----------------------------------------
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>reverse_3544
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-----------------------AGTGGCCTTACTCATCTGTGC------------------------------------
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