>input_sequence_65422
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----------------CTCCGATCTCGCCTTCCCCTATTCCTAGCTT-----GCTTAGCT--------------------
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--------------ATAAAACTAGCCCCGTCGTTTCAGCCTTGCTTTCTCCGTTCCTCA---GACTCGTCAGATTTCAGA
GTTCGGTAGCGTGGTTG---TTACCATGAGCTGCGCGAGCCTGCTGCTCCTGCTCTGCGTCCTCCTCCTCCTTGCCGCCA
TCGG---CCCCTTCGCCGCCGCTGCACGCAGAGGTAAGAAAATCTTTACGGCGACCAGAGCAAGG--TTCTGTGTCCATT
C---------------------TGTCCGGCCCTGACATTG---------CTCTCTCTTTCCAGAACCAGCAATGGCGGCC
ACCGGCGACGAAGCAGATGGCGCTCAGGCCAAGCTGGCCAGGATGAAAATGGCTCTCGCAGACGGCCAGGAGGAGAGGGT
GATCGTGAGGAAGCAGGAGAGTACAGACTCTGACAGTTTCACCACCACAAAGTTTTCTTCGAATGCCAAGAATCGGTTCG
ACGGCCGGGTGCCCTTCACCGCCGATTACCACACCGTACGCAGGCACCCGCCCTCGCACAACTAGGCGGAGCTCAGCTCA
GTGTACGTAC-TACTACTACTGGCTAGCTAAGCTGGTTGGTTGCCTGGAAATACAGTTAAATTAGCTTATAGAGTAACAG
TAACTACTAGGCTGTATAACATTTTCTCATCCTGTCTGTTCTCTCTATTCTTTGGCCCTTCTACGTAGTACCACTAGTAT
GCCACTCGTCTCCCTTGTGG-CTTGTCAGCTATGGATTTGCTGACGTTTTGTTAGTACTGGCCACGTCCTAGTAATGATA
TCCTATACTACTA---CTGCATTTGCTGTTTTTTCTTTTCTTACAGTGTACCATATAAGCTGTTCTTACAGTGTACCGCA
TAAGCTGTTAATTAACTATATGTACCTTTTTGTA-TGCATTACTAATTGGTAAGGGTACGTTG-----------------
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>chr6A_1_TraesCS6A01G171000
AAACGCATTAGGCCCTATATAGATGGAAGGAGGGAGTAAGTCACTTCTCACATGTATTTCAATGAGTTCCTCGCTGACCT
AAAAAAATTTGAGTTCCTCGCTGGAAACAAAATACGCATGTGACGGTGGACGACGGGTGGAGAAGCGCGCGATGCGTG-G
GCACATGACCGACCCAGGATCCGCTCAGCCGTGCCGCGCGTGGAAAGAGGAGACGGCAAGCGGTGCCTGCCCCATCACGC
AAACCGACCCCGCCGTACACTTGGAAGCTGGAATCCCTTCCAAAAAGACCGAGTTGACTGTCTGTCTCATCACGCCCAGC
GCAAGGATCCA-----------GCACCGATTCTACACACCAGAGGGTTCAGAGTTCAGACCAGGATCACGAGCTCTCCTC
GCTACAAGAGAAACA---ACAACAATAACATTGCTTAATCGTTCTTGGAATCAATCGTTTCACATGATTAGGACCGGCTA
CCAAAGCTCCCAACTCCCCTGTAAACCA-----TCGTGCGTA--------------------------------------
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--------------------------------------------------TACTACGTGTTCATGCACTGTACTGCGATC
CTTCAAGAGAATGC---TAGTCACCGCTACTCCTGTACGCATCAACGACTCGACGTCCGCCACACCACACAC--AGAGAG
TGATTAATCAACGGGTTTCCTGTTACGTGTTCCTCGGGGCACCGGCCGTATTATATACT-CCATCGCCATGGGAACCATG
ACCAAGCTCCAAGC-----------------CACGCACGCATGCATGGGGCTCTGCGATCGGCAT----GCATGCCGTCG
CCTTGGTTGCTGAATCCGGAGGAGAAAAAGAGAGAAAGAAAACACCCTCCTCCCTCGGAGAGCGTCTGCGGTTCACGACA
TGTCCTTGGGACGCCGCAGCTTGACAAATGACAACTTGACAAGGGACAGACTTTCGCCCGCGCCCAATACAAAAAC-ACA
GGTCCGTACCACCTGGAACTACTACAAGTAATACTAGTAGAGTGAGTGGCAGCCTAGCGGAACAATCAACTTTGACCAAT
CGTGTGCACGCCGCAACTCCGATCTCGCCTTCCCCTATTCCTAGCTT-----GCTTAGCT--------------------
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--------------ATAAAACTAGCCCCGTCGTTTCAGCCTTGCTTTCTCCGTTCCTCA---GACTCGTCAGATTTCAGA
GTTCGGTAGCGTGGTTG---TTACCATGAGCTGCGCGAGCCTGCTGCTCCTGCTCTGCGTCCTCCTCCTCCTTGCCGCCA
TCGG---CCCCTTCGCCGCCGCTGCACGCAGAGGTAAGAAAATCTTTACGGCGACCAGAGCAAGG--TTCTGTGTCCATT
C---------------------TGTCCGGCCCTGACATTG---------CTCTCTCTTTCCAGAACCAGCAATGGCGGCC
ACCGGCGACGAAGCAGATGGCGCTCAGGCCAAGCTGGCCAGGATGAAAATGGCTCTCGCAGACGGCCAGGAGGAGAGGGT
GATCGTGAGGAAGCAGGAGAGTACAGACTCTGACAGTTTCACCACCACAAAGTTTTCTTCGAATGCCAAGAATCGGTTCG
ACGGCCGGGTGCCCTTCACCGCCGATTACCACACCGTACGCAGGCACCCGCCCTCGCACAACTAGGCGGAGCTCAGCTCA
GTGTACGTAC-TACTACTACTGGCTAGCTAAGCTGGTTGGTTGCCTGGAAATACAGTTAAATTAGCTTATAGAGTAACAG
TAACTACTAGGCTGTATAACATTTTCTCATCCTGTCTGTTCTCTCTATTCTTTGGCCCTTCTACGTAGTACCACTAGTAT
GCCACTCGTCTCCCTTGTGG-CTTGTCAGCTATGGATTTGCTGACGTTTTGTTAGTACTGGCCACGTCCTAGTAATGATA
TCCTATACTACTA---CTGCATTTGCTGTTTTTTCTTTTCTTACAGTGTACCATATAAGCTGTTCTTACAGTGTACCGCA
TAAGCTGTTAATTAACTATATGTACCTTTTTGTA-TGCATTACTAATTGGTAAGGGTACGTTGTCCTCACAAGAAAGTAA
TGCTTTTGTTTGCCGTTCCAGCTGCAATGCAAACCCACGTTTAG----GGCAACCCGTAAATTTTCTCCCGCATCCGTCT
GTGAAA-------GGGGAATCAATCCACGGACACGGATGCGAGAGACCGTCATTCAACCGTAACCGCATACATTTCAAAC
CGCATTTTAACTAACCGGAAAAAATTCAAACAAACCGGCCGATATTTATCAAAGTTCGGATAGAAAATAGTATAAATCAT
CCATACATACCATGGAAATTAAGTCTAGTACAATAGTGTCTCTAATTCGACTAGATCCTGGATGTCCAACAAGTTTTTTA
TGAACGGATCATGTCGTTCCACACATACTCCCCTTTCAGCTTCATCCAACAGTGTGTGCACGTAATGGCGTAAATGGTCT
ATCCTGTGATACACCATCGCATCACATGCAGGCTACATATAATGTGTAGACCAACCTTGAGTGAATGTATCAATCAACAA
GTTGAGCAACATGAAGTAAAACTTACGATCTCGGGCTGACGAACCACGTCACAAAACTTGGTGACGCTGATCTGGATAAC
GTGCCAACGTACGAAAACGACCTCACTTGCGTGGTTGAATGATGTACATGTCATAAGGCGCAATGTGCTTTCGTGTGTGA
AACTTCATGCACTTGTTCCCAGAAGGCCCCCCCTCTGCTCCTGCGTACGAAACCCGCGGGTACTACCAACACGCATCGCA
GAACAACTCATCCTCCATGGTCGAGTAGCTCACCATCCTTCGCACCCTAAAAAACGACATAGCATTTGAAAGTAAGCTCA
ATGGCATTTGACCAAACACCTGTCGAGCATGGTATCCGCCATGGAGGTCGTCGACAAGGGGGCGGAGTGTACATGGGTAC
AAACGACTCCAGGGTGGACAACTCTGTCGAGCAGGCGCGTCGGTGCTAGTTCCGGACATCCGGCAATGCCTCTGTGGCGG
CTGGAGACGTACAGCAGCTTCGGCGGAGGTGGAG
>chr6B_116
GCATT---------------------------------------------------------------------------
----------------------------------------TGACGGTGGACGACGGGTGGAGAAGCGCGCGATGTGTG-G
GCACATGACCGACCCAGGATCCGCTCAGCGGTGCCGCGCGTGGAAAGAGGAGACGGCAAACGGTGCCTGCCCCATCACGC
AAGCCAAGCTGACCGTACACTTGGAAGCTGGGATCCCTTCCGAAA-GACCGAGTTGACTGTCTGTCTCATCACGCCCAGC
GCAAGGATCTAGTAGTACAGTGGCACCGATTCTCCACGACCCAGGGTTCGGAGTTCAGACCAGGATCACGAGCTCTCCTC
GCTACAAGAGAAATA---ACAGCAGCATCACTGCTTAATCGTTCTTGGAATCAATCGTTTCACATGATTAGGACCGGCTA
CCAAAGCTCCCAGCTCCCCTGTATACCAAACCATCGTGCGTA--------------------------------------
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--------------------------------------------------AACTACGTGTTGATGCACCGTACTGCGATC
CTTCAACAGAGTGC---TAGTCACCACTACTCCTGTACGCATCAACGACTCAACGTCCGCCACACCGCACACAGAGAGAG
TGATTAATCAACGGTTTTCCTGTTACGTGTTCCTCGGGGCATCGGCCGTATTATA--CT-CCATCGCCATCGGAACCATG
ACCAAGCTCCAAGCTCCGGCACGCACGCACGCACGCACGCATGCATGGGGCTCTGCGACCGGCCACCTCGCATGCCGTCG
CCTTGATTGCTGAATCCGGAGAAGAAAAAGAGAGAAAGAAAACACCCTCCTCCCTCGGAGAGCGTCCGCGGTTCACGACA
TGTTGTTGGGACGCCGCAGCTTGACAAATGACAACTTGACAAGGGACAGACTTTCGCCCGCGCCC--TATAGAAAA-CCA
AGTTCGTACCGCCTGGAACTACTACAAAGAACCAG----------------GCCTAGCAGTGCAATCAGCTTTGACCAAT
CGTGTGCACGCCGCAACTCCGATCTCGCCTTCCCCTAGCGAGGCTTAGCTTAGCTTAGCT--------------------
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--------------ATAAAAATAGCCCCGTCATTTCATCCTTGCTTTCTCCATTTCAGCCTCGAGTCGTCAGATTTCAGA
GTTCGGTAGTGCGGTTACTATTACCATGAACTGCGCGAGCCTGCTGCTCCTGCTCTGCGTCCTCCTCCTCGCCGCGC---
TCGG---CCCCTTCGCCGCCGCTGCACGCAGAGGTAAGTCTTCACCGCCGACACCAAGGTTCTATACTTCTGTGTTCATT
CCACACTGGGTAGCGAGAGGCATGTTCGGCCCTGACATTGTCACCGCCGCTCTCTTTTTTCAGAACCAACAATGGCGGCC
ACCGGCGACCAAGGAGATAGTGCTCAGGCCAAGCTGGCCTGGATGGGAATGGCCCCTGCAAAGGGTCTAAAGCAGAGGGT
GATCATGAGGAAGCAGGAGAGTACAGACTCTAACCGTTTCAGGACCAGAAAGTTTTCCTCGACTGCCAAGAATCCATTCG
ACGGCCGGTTGCCCTTCACCGCCGATTACCACAACGTGCGCAGGCACCCGCCCTCGCACAACTAGGCGGACCTCAGCTCA
GT----GTACGTACTACTACTGGCTAGCTAAGCTGGTTGGTTGCTTGGAAATACAG-----TTAGCTTATAGAGTAACAG
TAACTACTAAGCTGTATAACACTTTCTCATCCTCTCTGTTCTCTCTATTCTTTGGCCCTTCTACGTAGTACCACTAGTAT
GTTA------------GTGGCCTTGTCAGCTATGGATTTGCTGACGTTTTGTTAGTACTGGCCACGTCCTAGTAATGATA
TCCTATA-TACTA---CAGCATAAGCTGTTTTTTCTTACAGTGTA---------------------------GTACTGCA
TAAGCTGTTAATTAACTG--TGTACCAATTTGTATTGCATTACTAATTGGTAAGGGTACGTTGTCCTCACAAGAAAGCAA
TGCTTTTATTT---------------------------------------------------------------------
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>chr6D_116
GCATGCGAC-----------------------------------------------------------------------
-----------------------------------------------GGTGGACCGGTGGAGACGCCCGCGCGATGCGTG
GCACATGACCGACCCAGGATCCGCTCAGCCGTGCCGCGCGTGGAAAGAGGAGACGGCAAGCGGTGCCTGCCCCATCACGC
AAGCCAAGCTGACCGTACACTTGGAAGCTGGGATCCCTTCCGAAA-GACCGAGTTGACTGTCTGTCTCATCACGCCCAGC
GCAAGGGTCTAGC---ACAGTGGCACCGATTCTCCACGACCCAGGGTTCGGAGTTCAGACCAGGATCACGAGCTCTCCTC
GCTACAAGAGAAATACTAACAGCAGCATCACTGCTTAGTCGTTCTTGGAATCAATCGTTCCACATGATTAGGACCGGCTA
CCAAAGCTCCCAACTCCCCTGTAAACCAAACCATCGTGCGTACTACTACACCCTTCGTTTCATAATGTAGTGCGCCCACA
CATTTCAAGATTTAGGTTTGATCGTAAATTTAACCAACGAGACCAACTACGACGGGAGCAAAAATTATACCACTATGATC
AAACTTAGATCTGAAGAAATACGGGCACACTACATTATGAAATGAAGGAGTACTACGTGTTCATGCACTGTACTGCGATC
CTTCAAGAGAATGCTAGTACTCACCACTACGAC--TACGCATCAACGACTCAACGTCCGCCACACCACACACGC----AG
GGATTAATCAACGGTTTTCCTGTTACGTGTTTCTCGGGGCACCGGCCGTATTATA--CTCCCATCGCCATCGGAACCATG
ACCAAGCTCCAAGCCCCGGC--------ACGCACGCACGCATGCATGGGGCTCTGCGATCGGCAT----GCATGCCGTCG
CCTTGGTTGCTGAATCCGGAGGAGGA--------AAAGAAAACACCCTCCTCCCTCGGAGAGCGTCCGCGGTTCACGACA
TGTTCTTGGGACGCCGCAGCTTGACAAATGACAACTTGACAAGGGACAGACTTTCGCCCGCGCCC--TATAGAAAACCCA
AGTTCGTACCACCTGGAACCACTACCAG---TACTAGTAGAGTGAGTGGCAGCCTAGCGGAACAATCAACTTTGACCAAT
CGTGTGCACGCCGCAACTCCGATCTCGCCTTCCCCTATTCCTAGCTT-----GATTAGGCTAGCCATAATTGGGTAACAT
AAATAGTATCATGCACTTGGAACTTGCAAACATGCTTATGTGACAGGCAATTAAAGAAGAGAGAGATGGTTATAATAACA
TAGGTACATACTGTAACATAATAAATGTGATGCTACTATGTGTCATGCATGACAATAAATAAGACTATCTATGATATTAA
TATATGACACTATGGACTATAGAGGACTAGTAACATATGCATATGCGTGTTACTAGTCTAAGTTACTCCACACTATGACC
AGCCTTAGCTATAAATTAAACTAGCCCCGTTGTTTCAGCCTTGCTTTCTCCGTTCCTCA---GACTCGTCAGATTTCAGA
GTTCGGTAGTGCGGTTA---TTACCATGAACTGCGCCAGCCTGCTGCTCCTGCTCTGCGTCCTCCTCCTCGCCGCGC---
TCGGGCGCCCCTTCGCCGCCGCTGCACGCAGAGGTAAGTCTTCACCGCCGACACCAAGGTTCCATACTTCTGTGTTTATT
CCACACTGGGTAGCGAGAGGCATGTTCGGCCCTGACATTGTCACCGCCGCTCTCTCTTTCAAGAACCAACAATGGCGGCC
ACCGGCGACCAAGGAGATGGTGCTCAGGCCAAGCTGGCCTGGATGGAAGTGGCGCCCGCAGAGGGTCTAAAGGAGAGGGT
GATCACGAGGAAGGAGGAGAGTACAGACTCTAACCGTTTCAGGAGCACAAAGTTTTCTTTGGATGCCAAGAATCCGTTCG
ACGGCCGGGTGCCCTTCACCGCCGATTACCACACCGTGCGCAGGCACCCGCCCTCGCACAACTAGGCGGAGCTGACCTCA
GTGTACGTACGTACTACTACTGGCTAGCTAAGCTGGTTGGTTGCCTGGAAATACAG-----TTAGCTTATAGAGTAACAG
TAACTACTAAGCTGTATAACATTTTCTCATCCTCTCTGTTCTCTCTATTCTTTGGCCCTTCTACGTAGTGCCACTAGTAT
GTTACTCGTCTCCCTTGTGGCCTTGTCAGCTATGGATTTGCTGACGTTTTGTTAGTACTGGCCACGTCCTAGTAACGATA
TCCTATACTACTATTACTGCATTTGCTATTTT------------------------------TTCTTACAGTGTACCGCA
TAAGCTGTTAATTAACTATACGTACCTTTTTGTA-TGCATTACTGGTTGGTAAGGGTACGTTGTCCTCACAAG----TAA
TGCGTTTGTTTGACGTTCCAGCTGCAATGCAAACAAGGCATCTCCAGTGGCAAGCCACAAATTTTCTTCCGCATCCGTCC
GTGGACGTGGACGGGAGAATCAGTCCGCGGACACGAATGCGAGAGGCCGCTATCCAACCGTAACTGCATATATTTCAAAC
CGCATTTTAACCAAGCGGACGAAATTCATGCAAACCGACCGATATTCATCACAGTTCGGATAGAAAATAGCACAAATTAT
TCATACATACCATGCAAATTAAGTCTAGTACAACAATGTCTCTAATTTGACTAGAACCCAGATGTCCAACAAGTTTTC-A
TGAACGGATAATGTCATTCCACATATACTCCCCCCTCAGCTTCATCTTATAATGTGTGCACGTAAATGGCCGTCCC-TCT
GTCTTGTGGTACACCACGGCAGCGAGTGCGGGCTGCATATAATGTGTAGACCAACATTGAGTGAATGAATCA-TCAACAA
GTTGAGTAAGATGAAGTAAAACTTACGATCTCG-----------------------------------------------
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>SNPs
SS-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------S-----
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--S--S-S-SSS-------------------S---------S---S----------------------------------
---------S-----------------------S---SS-SS-------S------------------------------
-------------S-------S--SS-S--S-------------------------------------------------
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-------------------------S-------------------------S----------------------------
--------------S----------------------------------------SS-------------S---------
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------------------------------------------------------------------S-------------
---S-------------------------------------------------------------SS--S-S---S-S--
S--S------------------------S---------------------------------------------------
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---------S-S----S------------S----------------------------------------SSS--SSSSS
--------------------------------------SSSSSSSSSS--S-SS-S--SSSSSSS----------S----
-------------------------S------------------------------------------S-----------
---------S---S------S------------------S-----S-------S-S------S--S-SSS----------
----S--------------------------S--S------SS-------------------------------S-----
-------------------------------------S------------------------------------------
--------------------------------------------------------SSSSS-------------------
---------S-----------------------S----------------------------------------------
-SS-----------------------------------------------------------------------------
-------------------------------------SSSS-SS-SSSSSSSSSSSSSSSSS------------------
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------------S---------------------SSSSSS-SSS---------S--SS---------S-----------S
---S-S---------S------S---S--------S---------S---SS--S----------S-----S---------
-----------S--S----SS-------SS-------S--------S----S------------------S-S----S--
S-------------S------------------S-S-----------S-------S--SS-----------------SS-
---------S-----S-------S---------SS-----------SS-S-S-------------SS-SSSSSSSSS---
S--S----S-------SS---S-SSS---S----S--------------------S-----------S----S-------
------S--S-----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1118
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----------------------------------------------------------CCGCGCCCAATACAAAAACA--
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>reverse_3369
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--------CCAGGGTGGACAACTCTGTC----------------------------------------------------
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