>input_sequence_65413
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---------------------------------------------------------------------ATGGCGAGCGA
GCTGCTTCCGGCGGTGCTGCTGATCTCCGTGGCGTCATTGGCCGGACTGGCCGCCGGAGCTGCGCGCGCAGGCGGCGTCG
CCATCTACTGGGGCCAGAACGGCAACGAAGGCACGCTGGCGCAGACGTGCGCGAGCGGCAACTACAGGTTCGTCAACGTG
GCCTTCCTGTACACCTTCGGCAAGGGC---CAGACGCCGCTGCTGAACCTGGCGGGCCACTGCGACCCGGCGTCCAACGG
C---TGCACGGGCGTGGGCGCCGACGTCAGGTCCTGCCAGCGCCTCGGCATCAAGGTCATGCTCTCCATCGGCGGGGGCG
TCGGCAGCTATGGCCTCTCGTC---------CCGCGCGGACGCCAGGCAGGTCGCGAGGCACCTCTGGGAGAACTACCTC
GGCGGCACGTCGCCGTCGAGGCCCCTCGGCGACGCGGTGCTCGACGGCGTCGACTTCGACATCGAGAGCGGCGGGAGCGC
GCACTGGGACGAGCTGGCGCGGGAGCTCAAGAAGTACTCG------GGGAAGGGGCGCGAGCGCAGGAGGGTGTACCTGG
CGGCGGCGCCGCAGTGCCCGTTCCCGGACGCGTCGCTCGGCGGGCTCGGCGGCGCGCTCGGCACGGGCCTGTTCGACTAC
GTCTGGGTGCAGTTCTATAACAACCCGCCGTGCCAGTACACCACGGACGGCGGGGTGGGCAACCTGGCGCGCGCGTGGGA
GCAGTGGACGGCCATACCG---GCGAAGCAGGTGTTCCTGGGGCTCCCGGCGGCGCC-------------------CGAG
GCCGCCGGCACCGGGTTCGTGGAGGCGACAGACCTGGTGTCTAAGGTGCTGCCGGTGGTGAAGAAGTCGAAGAAGTACGG
TGGTATCATGCTGTGGTCGAGGTTCTACGATGGGAAGACAGGGTACAGCGACAAGGTCAAGCCCAGCCTGTGA-------
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---------------------------------------
>chr3D_1_TraesCS3D01G368900
TCCAACAACTAAGGTTAGAGTCAGGGTTTTCACCCTGAAGAATCAGTCTGAGATAATCCAAGCAATGCCTTCAATAAGGT
AACAACGCAAAACAACGTCGCCATTGCAGGTATAACCAACTCGGGCAGACCTAGGATTTCACCCTGAATCTCGAGACTGG
GTGCCCGTAGGACACCATCACAGTCACTCGTGTAGTCGCCACCACTTTTTCGCGATCTCAGCAACTACTCGTCGCCGCTG
CACAACCATCCCTCTGCGTCAAGTCTTTGTCCATAGTTTGCATCTCACCGCCGAAGTCCATCATCAGATCTGGAGAGATG
AACCCTCCCCTGAATCTTTCAGTGATCATCCTTGTCGTGGAGCCACAGGAGATCGCTGCAGCATTCTGCAGCCTCCACCA
TCCGGGCCGATCAGATCTGGATGACATCCATCGAGCCATTCAGACATGAATCAGCAAACCACGCTCGGGTCGATCGTAGA
CGACGCCGATACTGAATACTCCAGCCAGGTACTCTCTCCGTCCGAAATTACTTGTTGTAGAAATTGATGGAGGGAGTACT
TTGCATCCGTTCAAAAGGGG-------GATCGGTTGCAGCGAGCCGCCGCCTACGCTTTTGAACGAACAATTAGGTCAAC
CTCGCA--CGGCTCGTGGAAATGTGCTAGTGGGG-------GCGCA-----TTGTGGCCTTAACTGAAGTGCACCCCTAT
CTCGCGCACTGAACCTTTCTGCAAATCAAAGCAAAGTTCAGATGGTATTCGGGGAAGTGGTCCTCGCAGACGTTATTTGG
CGTCGAGCGAAGTGGAAGCTGCTCTCAACACGACGATAAGCTCAGAATACTCGCCAC--------TCACTCATGCCCGGC
GGCGCCGCAGAACGGTCGCAGACTCTGCAGACCTCTCTCTGGATTCACCTACATATAGAGTTACGGAGAGTCGGAGACCA
TGAACCTTCGTCCGCATAGCTCTTCACGTTCGGCTATCATCGCTTCATCGGCATCGCCGAGAAATCATGATGGCGAGCGA
GCTGCTTCCGGCGGTGCTGCTGATCTCCGTGGCGTCATTGGCCGGACTGGCCGCCGGAGCTGCGCGCGCAGGCGGCGTCG
CCATCTACTGGGGCCAGAACGGCAACGAAGGCACGCTGGCGCAGACGTGCGCGAGCGGCAACTACAGGTTCGTCAACGTG
GCCTTCCTGTACACCTTCGGCAAGGGC---CAGACGCCGCTGCTGAACCTGGCGGGCCACTGCGACCCGGCGTCCAACGG
C---TGCACGGGCGTGGGCGCCGACGTCAGGTCCTGCCAGCGCCTCGGCATCAAGGTCATGCTCTCCATCGGCGGGGGCG
TCGGCAGCTATGGCCTCTCGTC---------CCGCGCGGACGCCAGGCAGGTCGCGAGGCACCTCTGGGAGAACTACCTC
GGCGGCACGTCGCCGTCGAGGCCCCTCGGCGACGCGGTGCTCGACGGCGTCGACTTCGACATCGAGAGCGGCGGGAGCGC
GCACTGGGACGAGCTGGCGCGGGAGCTCAAGAAGTACTCG------GGGAAGGGGCGCGAGCGCAGGAGGGTGTACCTGG
CGGCGGCGCCGCAGTGCCCGTTCCCGGACGCGTCGCTCGGCGGGCTCGGCGGCGCGCTCGGCACGGGCCTGTTCGACTAC
GTCTGGGTGCAGTTCTATAACAACCCGCCGTGCCAGTACACCACGGACGGCGGGGTGGGCAACCTGGCGCGCGCGTGGGA
GCAGTGGACGGCCATACCG---GCGAAGCAGGTGTTCCTGGGGCTCCCGGCGGCGCC-------------------CGAG
GCCGCCGGCACCGGGTTCGTGGAGGCGACAGACCTGGTGTCTAAGGTGCTGCCGGTGGTGAAGAAGTCGAAGAAGTACGG
TGGTATCATGCTGTGGTCGAGGTTCTACGATGGGAAGACAGGGTACAGCGACAAGGTCAAGCCCAGCCTGTGAGCTGGTA
TTAACGG-CTACTAAGCTCGGGTCAGGGATCAAGAGCAAGTGCCATTAACATGTCCTCTATCACGTGTCAAGCCTGATAC
TGAGCAAAGACAAATAACAGGACAGAAATGTACTGTATGATCGTATTCATCACCAAGAACCACTTTCCTCTATCACAGTG
CATGTTCGTTTTGTTCTAAGTGAAACTTTGTAAAATTCGATCAGGTTTTTGAAAATCGACATAAAACAC--TATATGTCA
TCAAGCTTGCGGAAGATGGGGCTCGTGGGCGGATAGACCTGGTCCGGCTACATTGTGGTGATGGGGGAGCTCCGGCGAGT
CGTGTCGTTGCCGGCGAGCTCGAGGCAACAAGATCACCCTTCAAATTTCTGGTTGTAGTTTTGCTTAGATATTTCGATG-
-TTTTT-TTCTTCTGAAACACTTTGATTTTTTTTATGTTGCATAGGTTGTTTTCACAACCTTCATCCTCGTGTATGTTCT
GCCACAGTACACATGGACGTCATGTCGCAATTATTCTGGCTCATTGCAATGCTGTGTCCACACAACAAAGTTTTTAGTGT
TGTCGACCTGTAATTGATGTCGGTTCTATGTTGCTCATAGTGTAATGACTTTTCTTATTGGTTTGCTGCGATCAACCGGG
ATTTATTGCATATAGAAAAATGGTTTTATAGGTATGCTTGGCATGTTCCAACATTTCTGCATGTTTATGAAATACTGAGA
AAACATATTGTGTTGATGTTCCATAAGTAGAAGAAACATGTTGTAGTATGGATAGACTGGGCGTACCCTCCATTCGAACA
ACGTCTATTGTCTAGTCTTCTTTTGGCGCGAACGTCGTTAGCTAGAGTAGATAATTGATAGACTCATGGTATAATTCCTT
CACACGAACCGTTTTAAAAGGCTCAACTTTAAGAAAATCTTATATTTATGTTTTATTTCATAGAAGGTTAAATGCCACAT
ATTAAGTAGCACAAACCATAAATACACACTTACGGAAAT
>chr3A_508
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---------------------------GGTACTCTCTTCGTCCGGAATTATTTGTCGGAGAAACGGACAGAGGGAGTACT
TTGCATCCGTTCAAAAGGGGAATTATGGATCGGTTGCAACGAGCCGCCGCCTACACTTTTGAACGAACAATTCGGTCAAC
CTCGCA--CGGCTCGTGGAAATGTGCTAGCAGCTAGTGGGAGCGCA-----TTGTGGCCTTAACTGAAGTGCACCCCTAT
CTCTCGCACTGAACCTTTCTGCAAATCAAAGCAAAGTTCAGAAGGTATTCGGGGAAGTG-------------------GG
CGTCGAGCGAAGTGGAAGCTGCTCTCA-CACGATGATAAGCTCAGAATACTCGCCAC--------TCACTCATGCCCGGC
GGCGCGGCAGAACAGTCACAGACTCTGCAGACCTCCA--TGGATTCACCTACATATAGAGTTACA--------GAGACCA
TGAACCTTCGACCGCACAGCTC-TCACGTTCGGCTATCATCGCTTCATCGGCACCGCCGAGAAATCATGATGGCGAGCGA
GCTGTTGCCGGCGGTGCTGCTGATCTCCGTGGCGTCATTGGCCGGACTGGCCGCCGGAGCTGCGCGCGCAGGCGGCGTCG
CGATCTACTGGGGCCAGAACGGCAACGAAGGCACGCTGGCGCAGACGTGCGCGAGCGGGAACTACAGGTTCGTCAACGTG
GCCTTCCTGTACACCTTCGGCAAGGGC---CAGACGCCGCTGCTGAACCTGGCGGGGCACTGCGACCCGGCGTCCAACGG
C---TGCACCGGCGTGGGCGCCGACGTCAGGTCCTGCCAGCGCCTCGGCGTCAAGGTCATGCTCTCCATCGGCGGCGGCG
TCGGCAGCTACGGCCTCTCGTC---------CCGCGCGGACGCCAGGCTGGTCGCGAGGCACCTCTGGGAGAACTACCTC
GGCGGCACGTCCGCGACGAGGCCCCTCGGCGACGCGGTGCTCGACGGCGTCGACTTCGACATCGAGAGCGGCGGGAGCGC
GCACTGGGACGAGCTGGCGCGGGAGCTCAAGAAGTATTCG------GGGAAGGGGCGCGAGCACAGGAAAGTGTACCTGG
CGGCGGCGCCGCAGTGCCCGTTCCCGGACGCGTCGCTCGGCGGGCTCGGCGGCGCGCTCGGCACGGGCCTGTTCGACTAC
GTGTGGGTGCAGTTCTACAACAACCCGCCGTGCCAGTACACCACGGACGGCGGGGTGGGCAACCTGGCGCGCGCGTGGGA
GCAGTGGACGGCCATACCG---GCGAGGCAGGTGTTCCTGGGGCTCCCGGCGGCGCC-------------------CGAG
GCCGCCGGCAGCGGGTTCGTGGAGGCGGCAGACCTGGTGTCCAAGGTGCTGCCGGTGGTGAAGAAGTCGAAGAAGTACGG
TGGGATCATGCTGTGGTCGAGGTTCTACGACGGGAAGACCGGGTACAGCGACAAGGTCAAGCCCAGCCTGTGAGCTGGTA
TTAATTAACTGCTAAGCTCGGGTCAGGGATCAAGAGCACGTGCCATTAACATGTCCTCTATCACGTGTCAAGCCTGATAC
TGAGCAAAGACAAATAACCGGACAGAAATGTACTGTATGGTCGTATTCACCACCATGAACCACTTTCCTCTATCACAGTG
CATGGTCGTTTTGTTCTAAGTGAAACTTTGTAAAATTTGATCAGGTTTATGAAAATCAACATAAAACACTATATATGTTA
TCAAGCTTGCGGAAGATGGGGCTCATGGGCGGATAGATCCGGTCCGGCTACATTGTGGTGATGGGGGAGCAACGACGAGT
CGTGTCGTTGCCGGCGAGCTCGAGGCAACAAGATCACCCTTCAAATTTCTAGTTGTAGTTTTGTTTAGATATTTCGATGT
TTTTGT-TTCTTCTGAAACACTTCGATTTC-TTTATGTTGCATAGGTTGTTTTCACAACCTTCATCCTCGTGTATGTTCC
GCTACAATACACATGGGCGTCATGTTGCAATTATTCTGGTTCATTGCAATGTTGTGTCCACACAATATAGTTTTTAGTGT
TGTCGACCTGTGATTGATGTGGGTCCTATGTTGTTTATAATGCAATGGCTTTTCTTATTGGTTTGCTGCGATCAACCAGG
ATTTATTGCATATAGAAAAATGGTTTCAGAGGTATGCTTGGCATGTTCCAACATTTCTGCATGTTTATGAAATACTGAGA
AAACATATTATGTTGATGTTCCATAAGTAGAAGAAACTTGCTGCATTATGGATAGACGGGGTGTACCCTCCATTCG---A
ACGTCTATTGTCTAGTCTTCTTTGGGCGCGAACGTCGTTAGCTAGAGTAGATAATTGATAGATGCATGGTATAATTCCTT
CACACGAACCGTTTTAAAAGGCTCAACTTTAGGAAAATCTTATATTTATTTTTTATTTCATGGAAGGTTAAATGCCATAT
ATTAAGTAGCACACACCTTAAATACACACTTACGGGAAT
>chr3B_581
--------------------------------------------------------------------------------
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---------------------------GATCGGGTGCAGCAAGCCGCCGCTTACACTTTTTGGTCAACAATTGGGTCAAC
CTCGCGCTCGGCTTGTGGAAATCTGCTAGTGGGG-------GGGCTTTGTGTTGTGCCGTTAACTGAAGTGCATCCCTAT
CTCACGCACTGAACATTTCAGCAAATCAAAGCAAGTTAAGA---------GGGGAAGTGCATCTCGC-------------
-----AGCGAAGTGGAAGCAGCTCTCAACACCACGATAAGTTCAGAATACTCGCCACTCACTCAGTCACTCATGCCCGGC
GGCGCGGCAGAACAG-CACAGACTCTGCAGACCTCCA--TGGATTCACCTACATATAGAGTTACA--------GAGAGCA
TGAACTTTCGTCCGCAGAGCTCTTCACGTTCGGCTATCATCGCTTCATCGGCACCGCCAAGAAATCATGATGGCGAGCGA
GCTGTTGCCGGCGGTGCTGTTGATCTCCGTGGCGTCATTGGCCGGACTGGCCGCCGGAGC---GCGCGCAAGCGGCGTCG
CGATCTACTGGGGCCAGAACGGCAACGAAGGCACGCTGGCGCAGACGTGCGCGAGCGGCAACTACAAGTTCGTCAACGTG
GCCTTCCTGTACACCTTCGGCAAGGGA---CAGACGCCGCTGCTGAACCTGGCGGGCCACTGCGACCCGGCGTCCGACGG
C---TGTACGGGCGTGGGCGCCGACGTCAGGTCCTGCCAGCGCCTCGGCATCAAGGTCATGCTCTCCATCGGCGGCGGCG
GCGGCAGCTACGGCCTCTCGTC---------CCGCGCGGACGCCAGGCTTGTCGCGAGGTACCTCTGGGAGAACTACCTC
GGCGGCACGTCGGCGTCGAGGCCCCTCGGCGACGCGGTGCTCGACGGCGTCGACTTCGACATCGAGAGCGGCGGGAGCGC
GCACTGGGACGAGCTGGCGC-GGAGCTGAAGAAGTACTCG------GGGAAGGGACGCGAGCGCAAGAGGGTGTACCTGG
CGGCGGCCCCGCAGTGCCCGTTCCCGGACGCGTCGCTCGGCGGGCTCGGCGGCGCGCTCGGCACGGGCCTGTTAGACTAC
GTGTGGGTGCAGTTCTATAACAACCCGCCGTGCCAGTACACCACGGACGGTGGGGTGCGCAACCTGGCGCGCACGTGGGA
GCAGTGGACGGCCATACCG---GCGAGGCAGGTGTTCCTCGGGCTCCCGGCGGCGCC-------------------CGAG
GCCGCCGGCAGCGGGTTCGTGGAGGCGACAGACCTGGTGTCCAAGGTACTGCCGGTGGTGAAGAAGTCGAAGAAGTTCGG
TGGGATCATGTTGTGGTCGAGGTTCTACGATGGGAAGACCGGGTACAGCGACAAGGTCAAGACCAGCCTGTGAGCTGGCG
TTAACGG-CTGCTAAGCTCGGGTCAGGGATCAAGAGCACGTGCCATTAACATGTCCTCTATCACGTGTCAAGCCTGATAC
TGAGCAAAGACAAATAACAGGACAGAAATGTACTGTATGATCGTATTCATCACTAAGAACCACTTTCCTCTATCGCAGTG
CATGTTCGTTTTGTTCTAAGTGAAACTTTGTAAAATTCGATCAGGTTTATGAAAATT-ACATAAAACAC--TATATGTCA
TCAAGCTTGCGGAAGATGGGGCTC------------------------------GTGATGATGGGGGGGCTCCGACGAGT
CGTGTCGTTGCCGGCGAGCTCGAGACAGCATGATCACCCTTCAAATTTCTGGTTGTAGTTTTGTTTAGATAT--------
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>chr3D_1000
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--------------------------------------------------------------------GATGGCGAGCAG
ACAGTTTCCGGCAATGCTGCTGCTCACCGCGGTGACAATGGCCGGACTGGCCGCCGGA---GCGCGCGCGGGCGGCATCG
CGATCTACTGGGGCCAGAACGGCAACGAGGGCACGCTGGCGCAGGCGTGCGCGACGGGAAACTACAAGTTCGTCAACGTG
GCCTTCCTCTTCACCTTCGGCAAGGGC---CAGAAGCCGCTGCTGAACCTGGCCGGGCACTGCGACCCGGCGACCAGCGG
CTCGTGCACCTTCGTGGGCGCCGACGTCAAGTCCTGCCAGAGCCGCGGCATCAAGGTCCTGCTCTCCATCGGCGGCGGCG
TCGGCAGCTACGGCCTCTCGTC---------CGCCGCCGACGCCAAGCAGGTCGCGGAGTACCTCTGGGAGAACTACCTC
GGCGGCACGTCGACGACGAGGCCCCTCGGCGACGCGGTCCTCGACGGCGTCGACTTCGACATCGAGAGCGGCGGGAGCGC
GCACTGGGACGACCTGGCGCGGGAGCTCAAGAAGTACTCG------GGGAAGGGAAGCGCCTACAAGCCGGTGTACCTGG
CGGCGGCGCCGCAGTGCCCGTTCCCGGACGCGATGCTCGGCGGGCTCGGCGGCGCGCTCGGCACGGGGCTGTTCGACTAC
GTGTGGGTGCAGTTCTACAACAACCCGCCGTGCCAGTACACCAAGGCCGGCGGGGCGGGCAACCTGGCGAGCGCGTGGCA
GAAGTGGGCGTCGATACCG---GCGCGGCAGGTGTTCCTGGGGCTCCCGGCGGCGCC-------------------CGCG
GCCGCCGGCAGCGGGTTCGTGGAGCCGAGCGACCTGCTGTCTGAGGTGCTGCCGGTGGTGCAGAAGTCGCCGAAGTACGG
CGGGATCATGCTGTGGTCGAGGTTCTTCGATGGGCAAACGGGGTTCAGCGATAAGGTCAAGTCCAGCGTGTGAGCTGATA
TT------------------------------------------------------------------------------
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>chr3A_1000
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--------------------------------------------------------------------GATGGCGAGCAA
AGTGTTTCCGGCAATGCTGTTGCTCATTGCGGTGACAATGGCCGGACTGGCCGCCGGG---GCGCGCGCGGGCGGCATCG
CGATCTACTGGGGCCAGAACGGCAACGAGGGCACGCTGGCGCAGGCGTGCGCGACGGGGAACTACAAGTTCGTCAACGTG
GCCTTCCTCTTCACCTTCGGGAGGGGC---CAGAAGCCGCTGCTGAACCTGGCCGGGCACTGCGACCCGGCGACCAGCGG
CTCGTGCACCTTCGTGGGCGCCGACGTCAAGGCCTGCCAGAGCCGCGGCATCAAGGTTCTGCTCTCCATCGGCGGTGGCG
TCGGCAGCTACGGCCTCTCGTC---------CGCCGCCGACGCCAAGCAGGTCGCCGAGTACCTCTGGGACAACTACCTC
GGCGGCACGTCGACGACGAGGCCCCTCGGCGACGCGGTGCTGGACGGCGTCGACTTCGACATCGAGAGCGGCGGGAGCGC
GCACTGGGACGACCTGGCGCGGGAGCTCAAGAAGTACTCC------GGGAAGGGGAGCGCCTACAAGCCGGTGTACCTGG
CGGCGGCGCCGCAGTGCCCGTTCCCGGACGCGATGCTCGGCGGGCTCGGCGGCGCGCTCGGCACGGGGCTCTTCGACTAC
GTGTGGGTGCAGTTCTACAACAACCCGCCGTGCCAGTACACCAAGGCCGGCGGGGCGGGCAACCTGGCGAGCGCGTGGCA
GAAGTGGGCGTCGATACCG---GCGCGCCAGGTGTTCCTGGGGCTCCCGGCGGCGCC-------------------CGCG
GCCGCCGGCAGCGGGTTCGTGGAGCCGAGCGACCTGGTGTCCGAGGTGCTGCCGGTGGTGCAGAAGTCGCCGAAGTACGG
CGGGATCATGCTGTGGTCGAGGTTCTTCGATGGGCAGACGGGGTTCAGCGATAAGGTCAAGTCCAGCGTGTGAGCTG---
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>chr3B_1000
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--------------------------------------------------------------------GATGGCGAGCAA
GCTGTTTCCGGCAATGCTGCTGCTCACCGCGGTGACAATGGCCGGGCTGGCCGCCGGA---GCGCGCGCCGGGGGCATCG
CGATCTACTGGGGCCAGAACGGCAACGAGGGCACGCTGGCGCAGGCGTGCGCCACCGGCAACTACAAGTTCGTCAACGTG
GCCTTCCTCTTCACCTTCGGCAGGGGC---CAGAAGCCGCTGCTGAACCTGGCCGGCCACTGCGACCCGGCGACCAGCGG
CTCGTGCACCTTCGTGGGCGCCGACGTCAAGTCCTGCCAGAGCCGCGGCATCAAGGTCCTACTCTCCATCGGTGGCGGCG
TCGGCAGCTACGGCCTCTCGTC---------CGCCGCCGACGCCAAGCAGGTCGCCGACTACCTCTGGGACAACTACCTC
GGCGGCACGTCGGCGTCGAGGCCCCTCGGCGACGCGGTGCTCGACGGCGTCGACTTCGACATCGAGAGCGGCGGCAGCGC
GCACTGGGACGACCTGGCGCGGGAGCTCAAGAAGTACTCG------GGGAAGGGGAGTGCCTACAAGCCGGTGTACCTGG
CGGCGGCGCCGCAGTGCCCGTTCCCGGACGCCATGCTCGGCGGGCTCGGCGGCGCGCTCGGCACGGGGCTCTTCGACTAC
GTGTGGGTGCAGTTCTACAACAACCCGCCGTGCCAGTACACCAAGGCCGGCGGGGCGGGCAACCTGGCGAGCGCGTGGCA
GAAGTGGGCGTCGATACCG---GCGCGGCAGGTGTTCCTGGGGCTCCCGGCGGCGCCCGCGGCCGCCGGCGGCGCCCGCG
GCCGCCGGCAGCGGGTTCGTGGAGCCGAGCGACCTGCTGTCCGAGGTGCTGCCGGTGGTGCAGAAGTCGCCGAAGTACGG
CGGGATCATGCTGTGGTCGAGGTTCTTCGATGGGCAGACGGGGTTCAGCGATAAGGTGAAGTCCAGCGTGTGAGCTGATA
TT------------------------------------------------------------------------------
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---------------------------------------
>chr3D_1082
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----------------------------------------------------------------------GGCAGCATCG
CCATCTACTGGGGCCAGAACGGCAACGAGGGCACCCTGGCCGAGACCTGCAGCACGGGCAACTACGCCTTCGTCAACATC
GCTTTCCTCTGCAGCTTCGGGTCGGCCCAGGAGACCCCGCAGCTCAACCTGGCGGGCCACTGCGACCCCTACTCCAACGC
C---TGCACCAACCTCACCGCCGACATCAACCTCTGCCAGTCCAAGGGCGTCAAGGTGATGCTCTCCATCGGCGGCGGCG
CCGGCGGGTACACGCTCAACTCCGAGCAGGACGCCGCCGACC---------TCGCGAAGTACATCTGGGACAGCTTCCTC
GGCGGGAGCTCGCCCAAGCGGCCGCTCGGCGCCGCCGTGCTCGACGGCGTCGACTTCGACATCGAGGGAGGGAACCCGGA
CTACTACGGCGCGCTGGCGGCGCACCTCAAGGCCTACGGCGGCAAGGGCAAGGGGGGCAGCAAGGA---GGTGTACCTGT
CGGCGGCGCCGCAGTGCCCGTTCCCGGACCAGT---------GGGTCGGCAAGGCGCTCCAGACCGGCCTCTTCGACTAC
GTGTGGGTGCAGTTCTACAACAACCCGCCGTGCCAGTACGTGCAGGGGGACA---CGGCCAACCTCATGGACTCGTGGAA
GCAGTGGACGTCGGGGGTCCACGCCAAGTACATCTTCCTCGGGCTGCCGGCGGCGCC-------------------GGCG
GCGGCCGGGAGCGGGTTCATACCGGCGGGGAGCCTGGAGTCGCAGGTGCTCCCGGCGCTCAAGGGCTCCAGCAAGTACGG
AGGGGTGATGCTGTGGTCCAAGTTCTACGA--------------------------------------------------
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---------------------------------------
>chr3A_1082
--------------------------------------------------------------------------------
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----------------------------------------------------------------------GGCAGCATCG
CCATCTACTGGGGCCAGAACGGCAACGAGGGCACCCTGGCCGAGACCTGCAGCACCGGCAACTACGCCTTTGTCAACATC
GCCTTCCTCTGCAGCTTCGGGTCGGCCCAGCAGACCCCGCAGCTCAACCTGGCGGGCCACTGCGACCCCTACTCCGACGC
C---TGCACCAACCTCACCGCCGACATCAACCTCTGCCAGTCCAAGGGCGTCAAGGTGATGCTCTCCATCGGCGGGGGCG
CCGGCGGGTACACGCTCAACTCCGAGCAGGACGCGGCCGACC---------TGGCCAAGTACATCTGGGACAACTTCCTC
GGCGGGAGCTCGCCCAAGCGGCCGCTCGGCGCCGCCGTGCTGGACGGCGTCGACTTCGACATTGAGGGAGGGAACCCGGA
CTACTACGGCGCGCTGGCGGCGCACCTCAAGGCCTACGGCGGCAAGGGCAAGGGGGGCAGCAAGGA---GGTGTACCTGT
CGGCGGCGCCGCAGTGCCCGTTCCCGGACCAGT---------GGGTCGGCAAGGCGCTCGAGACGGGCCTCTTCGACTAC
GTGTGGGTGCAGTTCTACAACAACCCGCCGTGCCAGTACGTGCAGGGGGACA---CGGCCAACCTCATGGACTCGTGGAA
GCAGTGGACGTCGGGGGTCCACGCCAAGTACATCTTCCTCGGGCTGCCGGCGGCTCC-------------------GGCG
GCGGCGGGGAGCGGGTTCATACCGGCGGGGAGCCTGGAGTCGCAGGTGCTCCCGGCGCTCAAGGGCTCCAGCAAGTACGG
AGGGGTGATGCTGTGGTCAAAGTTCTACGA--------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------
>chr3B_1082
--------------------------------------------------------------------------------
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----------------------------------------------------------------------GGCAGCATCG
CCATCTACTGGGGCCAGAACGGCAACGAGGGCACCCTGGCCGAGACCTGCAGCACCGGCAACTACGCCTTCGTCAACATC
GCCTTCCTCTGCAGCTTCGGGTCGGCCCAGGAGACCCCGCAGCTCAACCTGGCGGGCCACTGCGACCCCTACTCCAACGC
C---TGCACCAACCTCACCGCCGACATCAACCTCTGCCAGTCCAAGGGCGTCAAGGTCATGCTCTCCATCGGCGGGGGCG
CCGGCGGGTACACGCTCAACTCCGAGCAGGACGCGGCCGACC---------TGGCCAAGTACATCTGGGACAGCTTCCTC
GGCGGGAGCTCACCCAAGCGGCCGCTCGGCGCCGCCGTACTCGACGGCGTCGACTTCGACATCGAGGGAGGGAACCCAGA
CTACTACGGCGCCCTGGCGGCGCACCTCAAGGCCTACGGC------GGCAAGGGGGGCAGCAAGGA---GGTGTACCTGT
CGGCGGCGCCGCAGTGCCCGTTCCCGGACCAGT---------GGGTCGGCAAGGCGCTCCAGACCGGCCTCTTCGACTAC
GTGTGGGTGCAGTTCTACAACAACCCGCCGTGCCAGTACGTGCAGGGGGACA---CGGCCAACCTCATGGACTCGTGGAA
GCAGTGGACGTCGGGGGTCCACGCCAAGTACATCTTCCTCGGGCTGCCGGCGGCGCC-------------------GGCG
GCCGCAGGGAGCGGGTTCATACCGGCGGGGAGCCTGGAGTCGCAGGTGCTCCCGGCGCTCAAGGGCTCCAGCAAGTACGG
AGGGGTGATGCTGTGGTCCAAGTTCTACGA--------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------
>chr3B_1082
--------------------------------------------------------------------------------
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----------------------------------------------------------------------GGCAGCATCG
CCATCTACTGGGGCCAGAACGGCAACGAGGGCACCCTGGCCGAGACCTGCAGCACCGGCAACTACGCCTTCGTCAACATC
GCCTTCCTCTGCAGCTTCGGGTCGGCCCAGGAGACCCCGCAGCTCAACCTGGCGGGCCACTGCGACCCCTACTCCAACGC
C---TGCACCAACCTCACCGCCGACATCAACCTCTGCCAGTCCAAGGGCGTCAAGGTCATGCTCTCCATCGGCGGGGGCG
CCGGCGGGTACACGCTCAACTCCGAGCAGGACGCGGCCGACC---------TGGCCAAGTACATCTGGGACAGCTTCCTC
GGCGGGAGCTCACCCAAGCGGCCGCTCGGCGCCGCCGTACTCGACGGCGTCGACTTCGACATCGAGGGAGGGAACCCAGA
CTACTACGGCGCCCTGGCGGCGCACCTCAAGGCCTACGGC------GGCAAGGGGGGCAGCAAGGA---GGTGTACCTGT
CGGCGGCGCCGCAGTGCCCGTTCCCGGACCAGT---------GGGTCGGCAAGGCGCTCCAGACCGGCCTCTTCGACTAC
GTGTGGGTGCAGTTCTACAACAACCCGCCGTGCCAGTACGTGCAGGGGGACA---CGGCCAACCTCATGGACTCGTGGAA
GCAGTGGACGTCGGGGGTCCACGCCAAGTACATCTTCCTCGGGCTGCCGGCGGCGCC-------------------GGCG
GCCGCAGGGAGCGGGTTCATACCGGCGGGGAGCCTGGAGTCGCAGGTGCTCCCGGCGCTCAAGGGCTCCAGCAAGTACGG
AGGGGTGATGCTGTGGTCCAAGTTCTACGA--------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------
>chr3B_2312
--------------------------------------------------------------------------------
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------------------------------------------------------------------AGATATTTCGATGT
TTTTTTCTTCTGCTGAAACACTTCGATTTTTTTTATGTTGCATAGGTTGTTTTCACAACCTTCATCCTCGTGTATGTTCT
GCTACAATACACATGGGCGTCATGTCGCAATTATTCTGGCTCATTGCAATGTTATGTCCACACAACAAAGTTTTTAGTGT
TGTCGACCTGTTATTGATGTCGGTTCTATGTTGCTTATAATGCAATGGCTTTTCTTATTAGTTTGCTGCGATCAACTGGG
ATTTATTGCATATAGAAAAATGGTTTCAGAGGTATGCTTGGCATGTTCCAACATTTTTGTATGTTTATGAAATACTGAGA
AAACATATTGTGATGATGTTCAATAAGTAGAAGAAACGTGTTGCAGTATGGATAGACGGGGCGTATCCTCCATTGGAACA
ACGTCTACTGTCTAGTCTTCTTTTGGCGCGAATGTTGTTAGCTAGAGTAGATA-TTGACAGATGCATGGTATAAATCCTT
CACACGAACTGTTTTAAAAGGCTCAACTTTAAGAAAATCTTATATTTATGTTTTATTTCAGAGAAGGTTAAATGCCATAT
ATTAAGTAGCACAAACCTTAAATACACACTTATGGAAA-
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS----------S------S-----S----S-S-----SS--SS-----------
------------------------------------------------------S-----------------S-------
--------------------------------------------------------------------------------
---S--------------------------------------S----------------SSS-----SSSSSSSSSSS--
--------------------------------------------------------------------------------
-----S-------S---S-----------------SSSS-------------------------SSSSSSSSS-------
----------------S------------------------------------S--------------------------
----S---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------S---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--S-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------S---------------------------------------------------------------------
---S-----------------------------------S----------------------------------------
----------S---------------------------S-----------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------S--------S----------------------
------------------------S------------S-S----------------------------------S-----
---------------------------------------------------------------S----------------
-----------------------S--------------------------------------------------------
--S---S---------S----------------------------------S----------------------------
-----------S-----------------------S---S--S----S--------------------------------
--------------------------S-S---------------------------------------------------
-------------------------------------S-----S-------------S----------------------
--------------------------------------------------------------SS----------------
-----------------------------------------------------------------------------S--
-----------------S---------------------
>forward_331
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------GGAGAGATG
AACCCTCCCCT---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------
>reverse_2011
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------ACTAAGCTCGGGTCAGGGAT--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------
