>input_sequence_65381
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---------------ATGGCCGGAGCCTACGTGCGCACGGCGATCATGCTCGCGCTCGGCTGCGC---GCTGGCCATCGC
CGCGGACGCTCTGGAGCCGAGCGGGTGGGTGAGGGCGCACGCCACCTTCTACGGCGGCAGCGACGCCTCCGGCACCATGG
GTACGTACCAATCTGCTCTCATGCGTGCATCTAGTTAGCTAATGGCAGATTGTGCATGATCATACATAT-----------
-GAACATGCAGGCGGTGCGTGCGGGTATGGGAACCTGTACGCGCAAGGGTACGGCACGCGGACGACGGCGCTGAGCACGG
CGCTCTTCAGCGACGGCGGCGCGTGCGGGCAGTGCTACAAGGTGGTGTGCGACCGCAAGACGGACAAGACGTGGTGCAAG
CCCGGCGTGTCCGTCACCGTCACCGCCACCAACTTCTGCCCGCCCAACTGGGACCTCCCCAGCGACAAGGGCGGCTGGTG
CAACCCGCCGCGCCCCCACTTCGACATGGCGCAGCCCGCCTGGGAGAAGATCGGCGTCTACCGCGGCGGCATCATCCCCA
TCATCTACCAAAGGTCCG-----------CCATCGATCAGGTTCACCAAGATCGATCATGATCACGCGTGTGTGTGCTAA
CCTAGCTAGCTCGTCGCTTTTGGCAGGGTGCCGTGCGTGAAGAAGGGCGGGGTGCGGTTCACCATCAGCGGCCACGACTA
CTTCGAGCTGGTGCTGCCGACCAACGT-GGCGGCGGCCGGCTCCATCAGGGCCATGGACGTCAGGGGCTCCAAGTCCGGG
CGACTGGATGGCGATGGCGCACAACTGGGGCGCCAACTGGCACTCGCTCGCCTACCTCAACGGCCAGGGGCTCTCCTTCA
GGGTCACCATCACCGACGGCCAGACGCTCGTCTTCGCCGACGTTGTGCCGCCCAGCTGGAGGTTCGGCCAGACCTTCTCA
AGTAA---------------------------------------------------------------------------
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>chr5A_1_TraesCS5A01G443400
GCTGCTTGAGACTTTGAGAGTGCACAGGCAA------GCAAGCACGGCAATGCAACATGGCTACGTGCGCCTCATCCCCG
TCTTCTCTCGCATGCACCGTCCGGGTAGCTAGCTGAGCTGAGAGTGTCAAACCTCCTTTAACTCTTTGGCAATCAACACA
TGGAAACGTACGCGCGCCACCAGCGCAACACGTCTTGTAGACGGAAGAAGCTTTCGTCGCTTCCGGCGGACGTCTACACC
ACCTTTTTTGCACATCATCTCCTCCCTTCTGGGTGATAAGTGATAACAAACAAACTGAGGACGAAACTG---GTCACATC
TATGCAAAACTGAGGGCAGAAGTGGACACATACATGCAGAAAGAAAGAAGCTTTCATTTCTTCGGACGTACGTCTACACA
ACCTTTTTTGCACATCATCAGATCATCTCATCCC---------TTCTGGGTGATAATAACAAAACAGGGGACAGAACTGG
ACACATACATGCAGGGAAAGATCAAAGATCAGTTTGTTAGAATATTTCTGCATGTCGACCCGGAGGCCCGG--GTTGATA
TGTTTTCAGCGAATTGGTTTCAGAAAGATTGGTCGCTTTTAGGTTTTAGCTAGGGATCATGCATGCATGCATGTCTCTGA
AGCAAGATGGAGATGTACGA---ACATTGGGTGGGTACTGGAATAGGTGTGTGCCATGT-------------------CA
TGCATGCGCGTACGAAAGCATCTTCAAGATGTGCCACACGCGCAAGTCATGCGCATGCATGTGCATTGCATCTCTTCATG
GCTACCTTCACTACCTTGTGATCGATATGGCCGGCGTGGCCTGCCTTTGTTATTTGCCAGTGCAGCCGCCTCACGTACGC
TAGCGTCTGTGTGTG----TGTATATATACCATATGTGT--TGTAGCATCGTCTTGTTCAGCTAGCGTTCATCCATCAGA
ACCACATCATTCGAGCGACAT---ATCCACAGCCACAAGTACACAAGAAACTACGTGCGGTTGTTCAGAGGAAAC----C
GACTGGTGGTACGCCATGGCCGGAGCCTACGTGCGCACGGCGATCATGCTCGCGCTCGGCTGCGC---GCTGGCCATCGC
CGCGGACGCTCTGGAGCCGAGCGGGTGGGTGAGGGCGCACGCCACCTTCTACGGCGGCAGCGACGCCTCCGGCACCATGG
GTACGTACCAATCTGCTCTCATGCGTGCATCTAGTTAGCTAATGGCAGATTGTGCATGATCATACATAT-----------
-GAACATGCAGGCGGTGCGTGCGGGTATGGGAACCTGTACGCGCAAGGGTACGGCACGCGGACGACGGCGCTGAGCACGG
CGCTCTTCAGCGACGGCGGCGCGTGCGGGCAGTGCTACAAGGTGGTGTGCGACCGCAAGACGGACAAGACGTGGTGCAAG
CCCGGCGTGTCCGTCACCGTCACCGCCACCAACTTCTGCCCGCCCAACTGGGACCTCCCCAGCGACAAGGGCGGCTGGTG
CAACCCGCCGCGCCCCCACTTCGACATGGCGCAGCCCGCCTGGGAGAAGATCGGCGTCTACCGCGGCGGCATCATCCCCA
TCATCTACCAAAGGTCCG-----------CCATCGATCAGGTTCACCAAGATCGATCATGATCACGCGTGTGTGTGCTAA
CCTAGCTAGCTCGTCGCTTTTGGCAGGGTGCCGTGCGTGAAGAAGGGCGGGGTGCGGTTCACCATCAGCGGCCACGACTA
CTTCGAGCTGGTGCTGCCGACCAACGT-GGCGGCGGCCGGCTCCATCAGGGCCATGGACGTCAGGGGCTCCAAGTCCGGG
CGACTGGATGGCGATGGCGCACAACTGGGGCGCCAACTGGCACTCGCTCGCCTACCTCAACGGCCAGGGGCTCTCCTTCA
GGGTCACCATCACCGACGGCCAGACGCTCGTCTTCGCCGACGTTGTGCCGCCCAGCTGGAGGTTCGGCCAGACCTTCTCA
AGTAACCTGCAGTTCAAGTGATCGGGAAACGTCGACGACGTACGGCGTACGAACGCGAAGATGGACTTAGACATCCAAAT
TACTTCATCTTCACGCCGTGGTCTAAATATTTGATATACATACAGCTTTGGTTGTGATGTGGTTGATTTACTTTTCTTGT
ATCGGATTGTGTGTTTGCTTAAGAAAAGTACATGCACACTTGGTTTGCATGTGTGATGTACATAAAGAGATGGATTTATC
GTTTATGTCTGTGAGGATTTCAGTGAATTAAGTTTTATGACACCACTATTCATAGGCATGCATTACGTGTTAATTTTTTA
ACGTATTTGCCATTAGTAAGTTGCTTATTTGCAACTCACATCAGTTGATTTCCGGAGGGCATAGCCCAGAAAAAAATTAT
ATGAGACCAGGTCTCACAGTTAGCAGGTGAGACCCACCCTGATGGATGACACGTGTCATTCACAAATCATAAATCATCNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNGGTGAGCCAACAGCGACCCAGAGCAAGGAATGAAACAACGTTGCCGGTGGAGGGGAGTC
TGAGGTAACTGGTTTGGGTGCGAGCGGGGAGGGGGGGAGGTGGAGAGGACGATGTGGTTAGAGGGATGGCCGGGGCAACG
ACATACTAGAGGAGATGGCGGCTTGGAGAGGGTGGGGGCGACGAGGTTGTCGCAACAGTGCCGTCGAGTGTGGGTGGTGT
GGTAGCCGTCTCCTCCGGTGTTGAAGGATGGTATGATGAAGAAGA
>chr5D_14
-------------TTGAGAGTGCAGAAGCAAAAGCAAGCAAGCACACT-----AACATGGCTACGTGCGCCTCATCCCGT
CTTCTTCTC----GCACCGTCCGGCTGGCTAGCGGAGCTGAGAGTGTCAAACCTCCTTTAACTCTTTGCCAATCAACACA
TGGAAACGTACGCGCGCCACCAGCCCAACACGTCTTGTAGACGAAAGAAGCTTTCATCGCTTCCGACGGACGTCTACACA
ACCTTTTTTGAACATCATCTCCTCCCTTCTGGGTGATAAGTGGTAACAAACAAACTGAGGACGAAACTGTCTGTCACATC
TATACAAAACAGAGGGCAGAACTGGACACATACATGCACGCAGAAAGAAGCTTTAATTGCTTCCGACGTACGTCTACACA
ACCTTTTTTGCACC--------TCATCTCATCCC---------TTCTGGGTGATAATAACAAAACCGAGGGCAGAACTGG
ACACATACATGCAGGGAAAGATCAAAGATCAGTTTGTTAGAATATTTCTGCATGTCGACCCGGAGGCCCGG--GTTGATA
TGTTTGCAGCGAATTGGTTTCAGAAAGATTGGTCACTTTTAGGTTTTCGCTGGGGAT----CATGCATGCATGTCTCTGA
AGCAAGATGGAGATGTACGG---ACATTGGGTGGGTACTGGAATAGGTGTGTGCCATGT-------------------CA
TGCATGCGCGTACGAAAGCATCTTCAAGATGTGCCACACGCGCAAGTCATGCGCATGCATGTGCACTGCATCTG--CATG
GCTACCTTCACTACATTGTGATCGATATGGCCGGCGTGGCCTGCCTTTGTTATTTGCCAGTGCAGCCGCCTCACGTACGC
TAGCGTCTCTGTGTGTGTGTGTATATATACCATATGTGT--TGTAGCATCGTCTAGTTCAGCTAGCGTTCATCCATCAGA
ACGACATCATTCGAGCGACATCGTCTCCATAGCCACAAGTACACAAGAAACTACGTACGGTTGTTCAGAGGAAAC----C
GACTGGTGGTAGGCCATGGCCGGAGCCTACGTGCGCACGGCGATCATGCTCGCGCTCGGCTGCGC---GCTGGCCATCGC
CGCAGACGCTCTGGAGCCGAGCGGGTGGGTGAGGGCGCATGCCACCTTCTACGGCGGCAGCGACGCCTCCGGCACCATGG
GTACGTATCCCGCTGCTCAACGACGCT---C----TAACCAATGGCAGTTTGTGATCTGATTTTACATCCATGCGTGAGG
CGTATACGCAGGCGGTGCGTGCGGGTACGGGAACCTGTACGCGCAGGGGTACGGCACGCGGACGACGGCGCTGAGCACGG
CGCTCTTCAGCGACGGCGGCGCGTGCGGGCAGTGCTACAAGGTGGTGTGCGACCGCAAGACGGACAAGACGTGGTGCAAG
CCCGGCGTGTCCGTCACCGTCACCGCCACCAACTTCTGCCCGCCCAACTGGGACCTCCCCAGCGACAAGGGCGGCTGGTG
CAACCCGCCGCGCCCCCACTTCGACATGGCGCAGCCCGCCTGGGAGAAGATCGGCGTCTACCGCGGCGGCATCATCCCCA
TCATCTACCAAAGGTCCG-----------CCATCGATCAGGTTGACCAAGAACGTTCATGATCATGCGTGTA--TGCTAA
CCTAGCTAGCTCGTCGCTTTTGGCAGGGTGCCGTGCGTGAAGAAGGGCGGAGTGCGGTTCACCATCAGCGGCCACGACTA
CTTCGAGCTGGTGCTGCCGACCAACGT-GGCGGCCGCCGGCTCCATCAGGGCCATGGACGTCAGGGGCTCCAAGTCC-GG
CGACTGGATGGCCATGGCGCACAACTGGGGCGCCAACTGGCACTCCCTCGCCTACCTCAACGGCCAGGGGCTCTCCTTCA
GGGTCACCATCACCGACGGCCAGACGCTCGTCTTCTCCGATGTGGTGCCGCCCAGCTGGAGGTTCGGCCAGACCTTCTCC
AGTAACCTGCAGTTCAAGTGACCGAGAAACGTTGACGACGTACGGCGTACGTACGTGAAGATGAACT-------------
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>chr5B_14
-------------TTGAGAGTGCACAGGCAA------GCAAGCACACT-----AACATGGCTACGTGCGCCTCATCCCGT
CTTCTTCTCGCATGCACCGTCCGGCTGGCTAGCTGAGCCGAGAGTGTCAAACCTCCTTTAACTCTTTGGCAATCAACACA
TGGAAGCGTACGCACACCACCAGCCCAACACGTCTTGTAGACGAAAGAAGCTTTCA------------------------
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--------------------------------------------------------TTGCTTCCGACGTACGTCCACACC
ACCTTTTTTGCACC--------TCATCTTTTCATCTCCTCCCTTTCTGGGTGATAATAACAAACT-GAGGACAGAACTGG
ACGCATACATGCAGGGAAAGATCT---ATCAGTTTGTTAGAATATTTCTGCATGTCGACCCGGAGGCCCGGTTGTTGATA
TATTTTCAGCGAATTGGTTTCAGAAAGATTGGTCACTTTTAGGTTTTCGCTAGGGAT----CATGCATGCATGCCTCTGA
AGCAAGATGGAGATGTACGAAGAACATTGGATGGGTACTGGAGTAGGTGTGTGCCGATCAGGATGAGGCCATGTCATGCA
TGCATGCGCGTACGAAAGCATCTTCACGATGTGCCACACGCGCAAGTCACGCGCGTGCATGTGCACCTTAAGC-------
----------------------------------------------TTGTTATTCGCCACT-----CGCCTCACGCACGC
GAGCCTTTACCTTAC---GTGTAGATATACCATCTCTTATATATATCATCGGCATGTTCAC----CGTTCATTCATCAGA
GAGACATCATTCGAGCCACAT---CTCCATAGCCACAAGTACAGAAGAAACCACGTACGGCTGTTCAGAGGAAACTGATC
GACTGGTGGTAGGCCATGGCCGGAACCTACGTGCGCACGGCGGTCGCGCTCGCGCTCGGCTGCCTACTGCTGGCCATCGC
CGCGGACGCCCTGGAGCCGAGCGGGTGGGTGAGGGCGCACGCCACCTTCTACGGCGGCAGCGACGCCTCCGGCACCATGG
GTACGTGAACCGCCGCTCGATCACTAGCTGC----TAATTAATGGCAGTTTATGCATGATCATACGTAT-----------
-GTACATGCAGGCGGGGCGTGCGGGTACGGGAACCTGTATGCGCAGGGGTACGGCGCGCGGACGACGGCGCTGAGCACGG
CGCTCTTCAGCGACGGCGGCGCGTGCGGGCAGTGCTACAAGGTGGTGTGCGACCGCAAGACGGACAAGACGTGGTGCAAG
CCCGGCGTGTCCGTCACCGTCACCGCCACCAACTTCTGCCCGCCCAACTGGGACCTCCCCAGCGACAAGGGCGGCTGGTG
CAACCCGCCGCGCCCCCACTTCGACATGGCGCAGCCCGCCTGGGAGAAGATCGGCGTCTACCGCGGCGGCATCATCCCCA
TCATCTACCAAAGGTCCGTCCGCCGTCCTCCATCGATCAGGTTGACCAAGAACTTTCATGATCATGCGTGTA--TGCTAA
CCTAGCTAGCTCGTCGCTTTTGGCAGGGTGCCGTGCGTGAAGAAGGGCGGGGTGCGGTTCACCATCAGCGGCCACGACTA
CTTCGAGCTGGTGCTGCCGACCAACGT-GGCGGCGGCCGGCTCCATCAGGGCCATGGACGTCAGGGGCTCCAAGTCC-GG
CGACTGGATGGCCATGGCGCACAACTGGGGCGCCAACTGGCACTCGCTCGCCTACCTCAACGGCCAGGGGCTCTCCTTCA
GGGTCACCATCACCGACGGCCAGACGCTCGTCTTCTCCAACGTGGTGCCGCCCAGCTGGAGGTTCGGCCAGACCTTCTCC
AGTAACCTGCAGTTCAAGTGATCGAGAAACGTTGACGACGTACGGCGTACGTACGTGAAGATGAACT-------------
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>chr5D_1216
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-----ATGCAGGAGGCGCGTGTGGGTACGGCAACCTGTACAACTCGGGGTACGGGATCAACAACGCGGCGCTGAGCACGG
CGCTGTTCAACGACGGCGCCATGTGCGGCGCGTGCTACACCATCTACTGCGACACCGGCCGGAGCAGGAT---GTGCAAG
CCGGGCACCCAGATCACCGTCTCCGCCACCAACTTCTGCCCGCCCAACTGGGCGCTCCCCAGCGACAACGGCGGCTGGTG
CAACCCGCCGCGGGTGCACTTCGACATGTCGCAGCCCGCCTGGACCAGCATCGCCATCTACGAGGCCGGCATCGTCCCCG
TCGTGTACAGGAGGTGATTACCACATCCACACACGAGAGTTGATAGTTGATATCTACGCAGATCTTTTGTATGAAGCGAT
GCTACTTCACTTGTGCCT----GCAGGGTGTCGTGCCAGAAGCGCGACGGCATCCGGTTCGGCATCTCCGGGAGGGACTA
CTTCGAGCTGGTGGTGGTGACCAACGTCGGCGGCAGCGGGGTCGTGTCCCAGATGTGGA-TCAAGGGCTCCAACACCA--
--ACTGGCTCGCCATGAGCCGCAACTGGGGCGCCAACTGGCAGAGCAACGCCTACCTCAACGGCCAGAGGCTCTCCTTCA
GGGTCAGGC-----------------------------------------------------------------------
-------------------------------TCGACGACGGCC-------------------------------------
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>SNPs
SSSSSSSSSSSSS--------------------------------SSSSSSSS-------------------------SS
SS-SS-------------------S-S-----------------------------------------------------
------------------------S------------------S-----------S---------S-------------S
----------S-------------------------------S-------------------------------------
---S------S----------S----------------SSS-------------S---S----S----------------
-------------SSSSSSSSS-------------------------------------------S-S------------
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----------------------------------S------------S---------SSSS-------------------
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-----------------------------------------------------------------S-------SSS----
--------------S-----------------------------------------------------------------
--------S-----------------------------------------------------------------------
--S---------------------S----S--------------------------S-----------------------
-----------S--------------------------------------------------------------------
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-------S-SSS------SSSSS--S--SS-SSSS--S----------S----------------S--------------
--S------------------------S-----------------S----------------------------------
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-------------------------------------------S-------S--S---------S------SSS------
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-----------------------------------------------------------------------------S--
------------S-------------------------------------------------------------------
-----------------------------------S-------S-----------------------------------S
------------------------S--------------------------S---S-------S---SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_342
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--TGCAAAACTGAGGGCAGAAG----------------------------------------------------------
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>reverse_2361
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----------------------------------------TCAGTTGATTTCCGGAGGGC--------------------
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