>input_sequence_65362
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--------------------------------------ATGCTAATATCTCCAGGACTCGCGGCACCGGCGGCGTCTCAC
CCGTCCCATTTCCTCACCGCCGCCAGCCTCGGCGACCGCGCTACTCTAGGCGGCCTCGTTCAACCGGCCGCAACGACGTC
GAAGACCCGCTGCTACAGCCGCAGTCGCAGCCGCCCGCTGCTCCGCTGTGCGACCGCCGACGCCACTTCTGTTGCGGGCA
GCGTATCGACCAGTGACACTCAGTGCGGCCTGGACCGCGACGAGCTCCGCGGGGTCTGCCAAGAGCCCGACCTCGAGGGA
GCAGTCAACCTGCTCGACGAAATGCTTCGCCGGAGGGGAGGCAACGGCTCGTCGGGCCAACTCGCGCCGGAAGAGCAGGC
AGCGGTCCTCCAGTGCTACGTCGACGCGCTCTCGCTGGCCTCCCTCAGACGAGGCCACCGCCTGCTCTCCAAGTCCACGT
CCCGGTACTCCGGGATCGCCGCGCCCATCGTGCACAGGATCGCCACGCTGTACTGCAAGCTCGGCGCCCCCGCCGACGCG
CGCCGCGTCCTCGAGGGAGCGTCGAGGCCGGCGCCGGGGAAGCCCGCGGACGCGGCGCAGGCCAAGCGGAAGGAGGCCTA
CGAGAAGGTTCGCGAGCTGCACGAGGAAATACGCGCGGCGGGGTACGTGCCGGACACCCGCTTCGTGCTGCACGACATCG
ACGAGGCCGCCAAGGAGCGCGCGCTCATGTACCACAGCGAGCGCCTGGCCATCGCCTTCGGGCTGGTGAGCACGCCGCCC
GGCACGCCGCTGCGGGTCATGAAGAACCTCCGCATCTGCGGGGACTGCCACAGCGCCGTCAAGCTCATCGCCAAGGTGAC
CGGCCGCGAGATCATCGTCAGGGACAACAAGCGGTTCCACCATTTCAAGGACGGCGGCTGCTCCTGCGGGGATTACTGGT
GA------------------------------------------------------------------------------
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>chr5D_1_TraesCS5D01G413500
CTTGAAAGGCTCCTTTTTTTTAGTGGTACCCTTGGAAGGGCGAATCCTATATGACGCGCGCCGGCGTCATAGAGGCGAGG
CTTCGCTGAAGGCGTCCCCCCCAAACCCCAGTTTGGGCCGGCCCACGGTGGGCTTCACTCTTTCTTTCTCTTTTATGCTT
CTTTTCTTCTTCTTTTCCTGT--------TTCCTTTTTACTTTATTTTATTTCCCTTTTTA------TTTTCTTTTTTCT
TTTTTCGTGTGTTATACATACTTTATG--TCTATTACAAATGTTCATTGTATACTAAGAAAATGTTAATGGTATATTACA
AAAAGGTTCACCATGCATTATAAATATGTCCATCGTATTTTCAGAATTTTTTCGACGAATACTACAAATGTTTACTTTGT
ATTTAAATTTTTTAGGGCATATTACACAAAATCAATGTGTATTGA---AAAATTGTTCAATGTACATTACACAAATGTTC
AATGCATATTCGAAAATTGTTCAACGTACATTATAAAATGTTCAATGCATATTCGAATTTTTCA----------------
----------------------------GCGTATATATTCGTATGTTCAAAATATTCGAAAATAAAAACCGAGCTTCAAA
ACGCGGCGCTACAGTGAACCGGATGGTACAGTACCGTCCCGAAACTGTGTTCCAGCATTTACATTTTTTTTATTTGAACT
GCAAATGGGCTGGCCCAGTTGGATGGACCCTGTGCGAAGCCAGGGTTTCTTGACGCACACGGGCGTCCGACAGGGACTCT
CCCTTGGAAGGCAGCGCTTCTCAATTAGTTTGCTCTCCCCTTCAGAAGACTAGAAAGGCCCCTGTATCTATGGGCTTAGA
CTTACCG---GCCCAACACGAATTGATGTGTGATTT------------AAAAAAAAACACGAATTGACGTCTTGTCCGCA
ACTGTGACCTCGTCGTCGACTCGTCCTCCCTCGCACTCTGCGTGTGGTTACCCCTTTCTCCTTCGCGTACCAGACAGACA
CTCGCTGAGTTCCCCTGCCACTCGCGTCGCCGGCAGATATGCTAATATCTCCAGGACTCGCGGCACCGGCGGCGTCTCAC
CCGTCCCATTTCCTCACCGCCGCCAGCCTCGGCGACCGCGCTACTCTAGGCGGCCTCGTTCAACCGGCCGCAACGACGTC
GAAGACCCGCTGCTACAGCCGCAGTCGCAGCCGCCCGCTGCTCCGCTGTGCGACCGCCGACGCCACTTCTGTTGCGGGCA
GCGTATCGACCAGTGACACTCAGTGCGGCCTGGACCGCGACGAGCTCCGCGGGGTCTGCCAAGAGCCCGACCTCGAGGGA
GCAGTCAACCTGCTCGACGAAATGCTTCGCCGGAGGGGAGGCAACGGCTCGTCGGGCCAACTCGCGCCGGAAGAGCAGGC
AGCGGTCCTCCAGTGCTACGTCGACGCGCTCTCGCTGGCCTCCCTCAGACGAGGCCACCGCCTGCTCTCCAAGTCCACGT
CCCGGTACTCCGGGATCGCCGCGCCCATCGTGCACAGGATCGCCACGCTGTACTGCAAGCTCGGCGCCCCCGCCGACGCG
CGCCGCGTCCTCGAGGGAGCGTCGAGGCCGGCGCCGGGGAAGCCCGCGGACGCGGCGCAGGCCAAGCGGAAGGAGGCCTA
CGAGAAGGTTCGCGAGCTGCACGAGGAAATACGCGCGGCGGGGTACGTGCCGGACACCCGCTTCGTGCTGCACGACATCG
ACGAGGCCGCCAAGGAGCGCGCGCTCATGTACCACAGCGAGCGCCTGGCCATCGCCTTCGGGCTGGTGAGCACGCCGCCC
GGCACGCCGCTGCGGGTCATGAAGAACCTCCGCATCTGCGGGGACTGCCACAGCGCCGTCAAGCTCATCGCCAAGGTGAC
CGGCCGCGAGATCATCGTCAGGGACAACAAGCGGTTCCACCATTTCAAGGACGGCGGCTGCTCCTGCGGGGATTACTGGT
GAGACGC-CTCCACCACAACTGCCATTGGCATCCATTCCTATCTTAGCC---------TAGTTCAGTGTCTCGAGCATGC
CTGTAAATTTTGGCAAAGGGTTTTGGTCTTGTGTAAGTGGAGAGAACAATGAAGCAATTTGTTTAGCCAACATGTGACAT
GATGCATTACCCAGCAAGATGACACTGATCGAAAGATTGTGCACTGCTACAACGAAATCTGATTGATCAAACATGATGAA
GCTCACAATTCCTCCTAGGAAAACCCCTCGTATTTCCACAAATCGAAGCAAAGAATCAAGAGAACAAAACAAGGAAGCTG
ATGAAAGCTATCATGTGCAGTGGGGAGGGAGGAGGTATCAGGGGCTCTGCTCAATCCGTGCCCGGCGAGGCCGCGCCACC
ACGGACCGCGGCTGTGACTGGCAGACCTGCGCCGGGAACTTGCATCCGAACCTCTTGGTCACCATTGAGCCCCACCTGCC
CTCCGCGGCCGGTGCCGCCGC---TCCTCTGTCCC---CGGCGGCGCCGCCTCGGCGGTCTATCTTCTGGATGGCTTTCC
TCATGGTGGTGCACTCGCGCTCCAGCTCCTGCACCCGGTTCCGCATGCTGTCCATGTCCAGCCTGAGCATTTGGTTCCCC
CTCGTCGCCACCCGCCATGTCCGGCCGCCATCACTGTCGCCGTCTTCCTCTCCTTGGCCTGCCGCACCGCCTTCATTCGC
CACGATCGTCCGCGCGATGGCCCGGCGCAGCTGGAGCTGCTCGAAGAAGAGCACCTGCACCACCGTCCGCAGCGGCAGCC
GTTCGTTCTGCGCCGCGTGCGTGCACGCCTCTAGCGTCAGCTTGCGCCCGTCCACCACGCCGCTCACCTTCTCCTTCTCC
TCCTCCCTCAGCGCTGGATGTGCCTGCACAAAGAACGGCGGCGGCGGCTTGTGAGCACCGGCATTGCGCTGCAAGCATCG
ATCAAGATGGCATTCAGAATGTGTTCGGCAGAAACCTTGATGTAGATGTCGACGGCAC
>chr7D_35
----------------------------------GAGGGGCGAATCCTATATGACGCCCGCAGGCGTCATAGAGGCGAGG
CTTCGCTGAAGGAATCCCACCCGACGCCC---TTGGGCCGGCCCATGGTCGCCTTCACTGTTTCATTCTCTTGTATGTTT
CTTTTCTTTTTATTTTTTTTCTTTTCCTGTTACTGTTTATTTTCTTTGCTTATCCTTTTTTCTTTTCTTTTCTTTTTTAT
TTTTTCGTGCATTACACTAAAATTTATTTTCTATTACAAAGGTTCATCAAGTACTAAGAAAATGTTCATGGTATATGACA
AAAAGGTTCACCGTGCATTATAAAATGTT-CATCGTATATTAAGAATTTGTTCAATGAATAATACAAATTTCCATTGTGT
ATT----TTTTTCAGCACATATTACACAAAATTATCAGTGTATATTCGAAAATTGTTCAATGTACATTACACAAGTGTTC
AATGCGTATTTAAAAATTGTTCACCGTACATTACAAAATGTTCAAGACATATTTGAAAATTGTTCAACATACATTAAAAA
AGTTCAATGTGTATTTGAAGTTTTTTCCGCATATATATTCATATGTTCAAAAAAATCGAAAATAAAAAACGAG-------
ACACGGTGCTACAGTGAACCGAATGGTACAGTACCATTCCGCTACAGTGTTCCAGCATTACGTTTTTCTATTTG---ACT
GCAAATGGGCTGGCCCAGTTGGATGGACCCTGTGCGAAGCCAATGCTTCTTGACGCACACGGGCGTCAGACAGGGAC---
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>chr5B_756
TCTCAGTTTGTTGC------------------------------------------------------------------
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-----------------------------------TCTCCTTCAGAAGACTAGGAAGGCCCCTGTATCTATGGGCTTAAA
ACTTAGTACAGGCCAACACGAATTAACGTCTGATTCTAAAAAAAAAAAAAAAAAAAACACGAATTGACGTCTCG------
--------------------TCGTCCTCCCTCGCACCCTGCGTGCGGTTACACC-TTCTCCTTCGCGTACCAGACAGACA
CTCCCTGAGTTCCGCTGCCACTCGCGTCGCCGGCAGATATGCTAATATCTCCAGGACTCGCGGCACCGGCGGCGTCTCAC
CCGCCCCCTTTCCTCACCGCCGCCAGCCTCGGCGACCGCGCTACTCTAGGCGGCCTCGTTCAACCGGCCGCAACGACGTC
GAAGACCCGCTGTTACATCCGCAGTCGCAGCCGCCCGCTGCTCCGCTATGCGACCGCCGACGCCGCTTCTATCGTGGGCA
GCGTATCGACCAATGACACTCAGTGCCGCCTGGACCGCGACGAGCTCCGCAGGGTCTGCCAAGAGCCCGACCTCGAGGGA
GCAGTCAACCTGCTCGACGAAATGCTTCGCCGGAGAAGCGGCGCCGGTGCGCCGGGCCAACTCGCGCCGGAAGAGCAGGC
CGCGGTACTCCAGTGCTACGTCGACGCGCTCTCGCTGGCCTCCCTCAGACGAGGCCACCGGCTGCTCGCCAAGTCCACGT
CCCGGTACTCCGGGATCGCCACGCCCATCGTGCACAGGATCGCCACGCTGTACTGCAAGCTCGGCGCCCCCGCCGACGCG
CGCCGGGTCCTCGAGGGTCCGTCGAGGCCGGCACCAGGAAAGCCCGCGGACGCGGCACAGGCCAAGCGGAAGGAGGCGTA
CGAGAAGGTGCGCGAGCTGCACGAGCAAATACGCGCGGCGGGGTACGTGCCGGACACCCGCTTCGTGCTGCACGACATCG
ACGAGGCCGCCAAGGAGCGCGCGCTCATGTACCACAGCGAGCGCCTGGCCATCGCGTTCGGGCTGGTGAGCACGCCGCCC
GGCACGCCGCTGCGGGTCATGAAGAACCTCCGCATCTGCGGGGACTGCCACAGCGCCGTCAAGCTCATCGCCAAGGTTAC
CGGCCGCGAGATCATCGTCAGGGACAACAAGCGGTTCCACCATTTCAAGGACGGCGCCTGCTCCTGCGGGGACTACTGGT
GAGACAGTCTCCACCACAACTGCCATTGGCATCCATTCCTCTCTTAGCCTAT--------GTTCAGTGTCTCGACCATGC
CTGTAAATTTTGGCAAAGGGTTTTGGTCTTGTGTAAGTGGGGAGAACAATGAAGCATTTTGTTTAGCCAACATATGACAT
GATGCATTAGCCAGCTATAGATGACACATCGAGCGATTGTGCACTGCTACAACGAAATCTGATTGATCAAACATGATGAA
GCTCACAATTCCTCCTAGGAAAACCCCTCGTATTTTCACAAAGCGAAGCAAAGAATCAAGAGAACAAAACAAGGAAGCTG
GTGAAAGCTATCATGTGCAGCGGGGAGGGAGGAGGTATCAGGGGCTCTGCTCAATCCGTGCCCGGCGAGGCCGCGCCACC
ACGGACCGCGGCTGTGACTGGCACACCTGCGCCGGGAACTTGCATCCGAACCTCTTGGTCACCATTGAGCCCCACCTGCC
CTCCGCGGCCGGTGCCGCCGC---TCCCTTATCCCCAGCGGCGCCGCCGCCTCGGCGGTCTATCTTCTGGATGGCTTTCC
TCATGGTGGTGCACTCGCGCTCCAGCTCCTGCACCCGGTTGCGCATGCTGTCCATGTCCAGCCTCAGCATTTGGTTCCCC
CTCGTCGCCACCCGCCACGTCCGGCCGCCATCGCTGTCGCCGTCTTCCTCTCCTTGGCCCGCCGCACCGCCTTCATTCGC
CACGATCGTCCGCGCGATGGCCCGGCGCAGCTGGAGCTGCTCGAAGAAGAGCACCTGCACCACCGTCCGCAGCGGCAGCC
GTTCGTTCTGCGCCGCGTGCGTGCACGCCTCTAGCGTCAGCTTACGCCCGTCCACCACGCCGCTCACCTTCTCCTTCTCC
TCCTCCCTCAGCGCTGGATGTGCCTGCACAAAGAACGGCGACGGTGGCTTGTGAGCACCGGCATTGCGCTGCAAGCATCG
ATCAAGATGGCATTCAGAATGTGTTCGGCAGAAACCTTGATGTAGATGTCGACGGCAC
>chr5A_773
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-----------------------------------TCCCCTTCATAAG-CTAGAAAGGCCCTTGTATCTATGGACTTAAA
CTTACCG---GCTCAACACGAATTGAC-----------------------------ACACGAATTGCTGTCTCGTCCGCA
AGTGTGCCCTCGTCGTCCTCCCTCCGTCCATCGCACTCTGCGTGCGGTTACCCC-TTCTCCTTGGCGTACCA--------
-------AGTTCCCCTGCCACTCGCGTCGCCGGCAGATATGCTAATATCTCCAGGACTCGCGGCGCCGGCGGCCTCTCAC
CCGTCCCCTTTCCTCGCCGCCGCCTGCCTCGGCGACCGCGCTGCTCTAGGAGGCCTCGTCCAGCCGGCCGCAACGACGTC
GAAGACCCGCTGCTA------------CAGCCGCCCGCTGCTCCGCTATGCGACCGCCGACGCCGCTTCTATTGCGGGCA
GCGTATCGACCAATGACACTCGGTGCCGCCTGGACCGCGACGAGCTCCGCAGGGTCTGCCAAGAGCCCGACCTCGAGGGA
GCAGTTAACCTGCTCGACGAAATGCTTACCCGGAGAGGCGGCGCCGGCGCGTCGGGCCAACCCGCGCCGGAAGAGCAGGC
CGCGGTCCTCCAGTGCTACGTTGACGCGCTCTCGCTGGCCTCCCTCAGACGAGGTCACCGCTTGCTCGCCAAGTCCACGT
CCCGGTACTCCGGGATCGCCATGCCCATCGTGCACAGGATCGCCACGCTGTACTGCAAGCTCGGCGCCCCTGCCGACGCG
CGGCGCGTCCTTGAGGGAGCGTCGAGGCCGGCACCAGGAAAGCCCGCGGACGCGGCGCAGGCCAAGCGGAAGGAGGCCTA
CGAGAAGGTGCGCGAGCTGCACGAGGAGATACGCGCGGCGGGGTACGTGCCGGACACCCGCTTCGTGCTGCACGACATCG
ACGAGGCCGCCAAAGAGCGCGCCCTCATGTACCACAGCGAGCGCCTGGCCATCGCGTTCGGGCTGGTGAGTACCCCGCCC
GGCACGCCGCTGCGGGTCATGAAGAACCTCCGCATCTGCGGGGACTGCCACACCGCCGTCAAGCTCATCGCCAAGGTGAC
CGGCCGCGAGATCATCGTCAGGGACAACAAGCGGTTCCACCATTTCAAGGACGGCGCCTGCTCCTGCGGGGATTACTGGT
GAGACGC-CTCCACCGCA----CCATTGACATCCATTTCTCTCTTACTGATTACTGGGTAATTCAGTGTCTCTACCAAGC
CTGTAAATTTTGGCA--GGCTTTTGGCCTTGTGTAAGTGGAGAGAACAATGAAGCAATTTGTTTAGCCAACATGTGACAT
GATGCATTACCCAGCAAGACGA-------------------CACTGCTACAACGAAATCTGATTGATCAAACATGATGAA
GCTCACAATTCCTCCTAGGAAAACCCCTCGTATTTTCACAAATCGAAGCAAAGAATCAAGAGAACAAAACAGGGAAGCTG
ATGAAAGCTATCATGTGCAGTGGGGAGGGAGGAGGTATCAGGGGCTCTGCTCAATCCGTGCCCGGCGAGGCCGCGCCACC
ACGGACCGCGGCTGTGACTGGCAGACCTGCGCCGGGAACTTGCATCCGAACCTCTTGGTCACCATTGAGCCCCACCTGCC
CTCCGCGGCCGGTGCCGCCGCCGCTCCTCTATCCC---CAGCAGCGCCGCCTCGGCGGTCTATCTTCTGGATGGCTTTCC
TCATGGTGGTGCACTCGCGCTCCAGCTCCTGCACCCGGTTCCGCATGCTGTCCATGTCCAGCCTGAGCATTTGGTTCCCC
CTCGTCGCCACTCGCCACGTCCGGCCACCGTCGCTCTCGCCTTCTTCCTCTCCTTGGCCTGCCGCACCGCCTTCATTCGC
CACGATCGTCCGGGCGATGGCCCGACGCAGCTGGAGCTGCTCGAAGAAAAGCACCTGCACCACCGTCCGCAGGGGCAGCC
GCTCGTTCTGCGCCGCGTGCGTGCACGCTTCCAGCGTCAGCTTGCGCCCGTCCACCACGCCGCTCACCTTCTCCTTCTCC
TCCTCCCTCAGCGCTGGATGTGCCTGCACAAAGAACGGCGGCGGCGGCTTCTGAGCACCGGCATTGAGCCGCAAGCATCG
ATCAAGATGGCATTCAGAATGTGTTCGGCAGAAACCTTGATGTAGATGTCGACGGCAC
>SNPs
SS-S-SSSSS-SSSSSSSSSSSSSSSSSSSSSSS--S--------------------S---S------------------
------------SS----S---S-SS---SSS-------------S---S-S-------S----S-------S----S--
--------S--S----SS-SS----------S--S----S---S---SS--SS-------S-----------------S-
---------SS---S--SS-SS--SSS-------------S------SSSS---------------S---------S---
------------S-----------SSSS-S--------S--S-------S---S-S-----S-------S-SS-S-S---
---SSSS-----S--SS---------------S-SSSSSSSS-SS-----------------------------S-----
-----S----SS-----------S---------S-----------SS------S---SS--SSS----------------
------------------------------S---------S-----------S-S-------------S----SSSSSSS
--S---S--------------S-------------S-S---SS--S-------------SSSS----S-S-S-SSSS---
------------------------------------------SS-S---------------------S---------SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------S-
--------------------------S--S-----S------------------------------------S-------
-S----S----------SS-------------------------S---------S-------------------------
---S----------------------------------------------------------------------------
-------S------------------------------------------------------------------------
-----------------S-----------------------------S----------------S-----S---------
------------S-------------S-----------------------S-----------------------------
-----------------------------------S--S---SS----S-------------------------------
S------------------------------------------------------------------S------------
--------------------S-----------------------------------------------------------
--------------------------------S--S--S-----------------------------------------
---------S----------------------------------------------------------------------
-------------------------------------------------------S------------------------
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--------------------------------------------------------S-----------------------
----------------------------------------S---------------------------------S-----
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-------------------S--S--SS-----SS----------------------------------------------
-----------------------------------S--------------------------------------------
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------------------------------S-------------------------------------------------
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-----------------S--------------S-----------------------------------------------
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>forward_145
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---------------------------------------------CGGTGGGCTTCACTCTTTCT---------------
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>reverse_2194
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---------------------------------AGATTGTGCACTGCTACAACG--------------------------
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