>input_sequence_65356
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----------------------------------------ATGGGGAGGTCGCCGTGCTGCGAGAAGGCGCACACCAACA
AGGGCGCCTGGACCAAGGAGGAGGACGACCGGCTCACCGCCTACATCAAGGCGCACGGCGAGGGCTGCTGGCGCTCCCTG
CCCAAGGCCGCGGGGTTGCTCCGCTGCGGCAAGAGCTGCCGCCTCCGCTGGATCAACTACCTCCGCCCCGACCTCAAGCG
CGGCAACTTCAGCGATGAGGAGGACGAGCTCATCATCAAGCTCCACAGCCTCCTGGGCAACAAGTACGTTCATC------
--TATCCATACCATATATAGCTCCAATGAATGAACGATCCTCTGTTT-----TACATGCATGGCCTTGTGAAAACATAGC
GCTGACAGTATTGTTTCTGTTTGACGAACGCAGATGGTCTCTGATAGCCGGGAGACTCCCAGGGAGGACGGACAACGAGA
TCAAGAACTACTGGAACACGCACATCAGGAGGAAGCTCACGAGCCGGGGGATCGACCCGGTGACCCACCGCGCGATCAAC
AGCGACCACGCCGCGTCCAACATCACCATATCCTTCGAGACGGCGCAGAGGGACGACAAGGGCGCCGTGTTCCGGCGAGG
CGCCGAGCCCACCAAGGTAGCGGCAGCGGCAGCGGCGATCACCCACGTGGACCACCATCACCATCACCGTAGCAACCCCC
AGATGGACTGGGGCCAGGGGAAGCCACTCAAGTGCCCGGACCTGAACCTGGACCTGTGCATCAGCCCCCCGTCCCACGAG
GACCCCATGGTGGACACCAAGCCCGTGGTGAAGAGGGAGGCCGGCGTCGGCGTCGGCGTCGTGGGCCTGTGCTTCAGCTG
CAGCATGGGGCTCCCCAGGAGCGTGGAGTGCAAGTGCAGCAGCTTCATGGGGCTCCGGACCGCCATGCTCGACTTCAGAA
GCATCGAGATGAAATGA---------------------------------------------------------------
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>chr5A_1_TraesCS5A01G329900
ATACAGATCATCTCCATGTCGACATGATTGTGTTGGAGAATCAAAACAG-CCCCCG-TAGTCCATAGACGACATCATGTA
GGACACACGAATTGCACTGCCCCTGGGTCACAACTGACAGGA-----GAGGTCCTAGAAAATGGCTCGGGGAATAGTCTC
CAACGTGGCACATATTCTTCA-TCTAAATAAAATTCTTGGCAGACAAATTATCATTGAGTTTGTGTCTTACAGAAAGATT
GAGG-TTCTATATCCGATCTCGGCGATCGTCGATGCGGATAATTTACTTGTAGACTGAACGGGTTCGACACCCTGGCCCT
GGATTGAATGGGTTATTTGCTTGTGTTGCACGAGTAGTTTTTAGGCAGGGAGGGCAGCATCAAGGGAAAGAGAGTGGGAG
GGAGGGGAAATTGGGTGGACCTAATAATCCCCCACAAACAACTTAGGAAGAGGGAGGCATCACGGGTGG--ATGCGGTTA
GTTAGCTGTTAAAAC-------CGAAGGCGCCAAGAGGGTAGGCAGGGGGAGC-------TACCTCACTTTACACCTACC
TGTGAGGCTTGTGAATCGGGCAAGTAGGCAGGCAAATGGAGCCTGTGTGTCCTGTGCCCTGTGGCTGGCTGTGTCGTTGT
TGCCTTTCTATCCTCCTCTTTGTGTGTGTGTGTGTGTGTGTAATAAACTGGTAAACAAACCGGTGGGGTGCTGAGTTGAG
GTGAGGT----------CATGACCTGTGGGAGAG----------------GGAGGGGGAGGCCTACCAGTGC---CCGTA
CCAGCCTAACCTTTTTCCCACCAACTCAGCCTCTAGAAGACCTTCTTCCCCGATCCAGTGCCAGTCAAGTGCAGTGCCGC
CTATAAAGATCC-AGCCTCCGGGTCACCCACCCCTCCCCGTAGCACTAGCCCCCAACAACAACAA------CAGCACCAA
CTTCCACTCCTGCAAACCCGACCCAACCCAACCCAA-----CCCACCACCGAGCACAAGAAAA-GGAGA----------G
TCATCGGCGGCGGCAGACCATC---TACAGAGATAGTGAGATGGGGAGGTCGCCGTGCTGCGAGAAGGCGCACACCAACA
AGGGCGCCTGGACCAAGGAGGAGGACGACCGGCTCACCGCCTACATCAAGGCGCACGGCGAGGGCTGCTGGCGCTCCCTG
CCCAAGGCCGCGGGGTTGCTCCGCTGCGGCAAGAGCTGCCGCCTCCGCTGGATCAACTACCTCCGCCCCGACCTCAAGCG
CGGCAACTTCAGCGATGAGGAGGACGAGCTCATCATCAAGCTCCACAGCCTCCTGGGCAACAAGTACGTTCATC------
--TATCCATACCATATATAGCTCCAATGAATGAACGATCCTCTGTTT-----TACATGCATGGCCTTGTGAAAACATAGC
GCTGACAGTATTGTTTCTGTTTGACGAACGCAGATGGTCTCTGATAGCCGGGAGACTCCCAGGGAGGACGGACAACGAGA
TCAAGAACTACTGGAACACGCACATCAGGAGGAAGCTCACGAGCCGGGGGATCGACCCGGTGACCCACCGCGCGATCAAC
AGCGACCACGCCGCGTCCAACATCACCATATCCTTCGAGACGGCGCAGAGGGACGACAAGGGCGCCGTGTTCCGGCGAGG
CGCCGAGCCCACCAAGGTAGCGGCAGCGGCAGCGGCGATCACCCACGTGGACCACCATCACCATCACCGTAGCAACCCCC
AGATGGACTGGGGCCAGGGGAAGCCACTCAAGTGCCCGGACCTGAACCTGGACCTGTGCATCAGCCCCCCGTCCCACGAG
GACCCCATGGTGGACACCAAGCCCGTGGTGAAGAGGGAGGCCGGCGTCGGCGTCGGCGTCGTGGGCCTGTGCTTCAGCTG
CAGCATGGGGCTCCCCAGGAGCGTGGAGTGCAAGTGCAGCAGCTTCATGGGGCTCCGGACCGCCATGCTCGACTTCAGAA
GCATCGAGATGAAATGAGCAGAGCAGAGCAGAGCACCCCCTCCCT------------CCTCTCTCCTGTGA--CTTGGAT
ATTGGTTTAGCCTGTAGGTGA-AAA--TACAGCGAGTGAAAGAGATGCAAGAAGAAAGAGC--GATGATCTTGTGGTGCC
CTGTTTCGCCAGGATCATCTCCTTTCCTTCTTTATGCC------CTCTC-GTTGCTCCATTTTGTTTGTCCGGTTGTAAA
AAAAAAAATTACCGTTTGACTAATCATGGGCAATAATACTCTGGTGCTGGGTGGCTCACTGTA-----------------
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-------------------TAAATTACAGGAGTGCTTTCAAGAAAGTGCAATAGTAATATGAAGGTGGCAATTCCTTT-G
GC-----AGGAGAGGAGAGCAGACCAGAATGGCCAGATTCAGTGTGCCCCGTGTGGGCGTTGATCTCGAGACCGGGGCAC
TGAACCGGGCAGAGGCAGACCCTGAGCCTGAGCGCGTGGGCGCATGTGAGCATTGCCTAATCCTGCATCCACGGCAAAGG
CAGCGACTCGTGACACGCTTTGCGACCTGCTTT-CTTTTCGATGCCCTTTGGGGCGGC-------TACATACATACATAC
ATAAACCTTTTTTTCTCTTGCCAAAAG-----------------GTCCAGGTGAATATTTTTCGAGTCGA--------TC
-TAAGTAATTTTACATCCGTCGTTAAACAGAT-AGATGATGACGCCTAACTTCTCTAACCTTTTCTATCGGCGGAAGAAA
AAAAGCTTCTCTAACCATGGCTTGTGATTGATTATAAT----AACAAAAGTA---------------ATCCATACGCAGG
TGGTTAGAGGAAAGATCGTGTGTGTATATGAAACCAGGTGTGTTTATTTAGGTGGAAGGTGGTAACGCGTGGTATTTAGT
ATC---------------------GGAGAATCGGCTAACCACGGCGAGAAGAAAGGAAGGA------------GGACAGG
AAGGTGACAAAGGGACAAGGGAAGCATTTTAATATGGGGCTTGCTGGTTAGGTAAGGCCAGCCCAGCCACCTCTTC---T
CTTCTAATCTAATCTAATCTACTTCCTCTGTTCCTAAATATTTGTCTTTCTAGAC
>chr5D_1
ATACAGATCATCTTCATGTCGACATGATTGAGTTGGAGTATCAAAACAGCCCCCCCATAGTCCATAGACGACATCATGTA
GGACACACGAATTGCACTGCATC----------------ACTCACAGGAGGTCCTAGAAAATGGCTCGGGGAGTAGTGTC
CAACGCGGCACATATTCTTTA-TCTAAATAAAATTCTTGGCAGACAAATTATCATTGAGTTTGTGTCATACAAAAAGATT
GGGGATTCTATATCCGATCTCGGCAATCGTCGATGCGGATAATTTACTTGTAGACTGAACGGGTTCGGCACCCTGGCCCT
GGATTGAATGGGTTATTTGCTTGTGTTGCACGAGGAGTTTTTAGGCAGGGAGGGCAGCATCAAGGGAAAGAGACT----G
GGACGGGAAATTGGGTGAACCTAATAATCCCCCACAAACAACTTAGGAAGAGGGAGGCATCACGGGTGGATATGCGGTTA
GTTAGCTGTTAAACCGAACGAACGAACGCGCCAAGAGGGTAGGCAGGGGGAGGGGGAGCTTACCTCACTTTACACCTGCC
TGTGAGGCTTGTGAATCGGGCAAGTAGGCAGGCAAATTGAGCCTGT-TGTCCTGTGCCCTGTGGCTGGCTGTGTCATTGT
TGCCTTTCTATCTTCCTCTTTT----------TGTGCGTGTAATAAACTGGTAAACAAACCGGTGGGGTGATGAGTTGAG
GTGAGGT----------CATGGCCTGGGGGAGAGTCCGGGAGGGGGAGGGGGAGGGGGAGGCCTACCAGTAG---CAGTA
CCAGCCTAACCTTTTTCCCACCAACTCAGCCTCTAGAAGACCTTCTTCCCCGAT------CCAGTCAAGTGCAGTGCCGC
CTATAAAGATCC-AGCCAAAGGCTCACCCACCCCTCCCCGTAGCACTAGCCCCCAACAACAACAA------CAGCACCAA
CTTCCACTCCTGCAA-----ACCCAACCCAACCCAA-----CCCACCACCGAGCACAAGAAAAAGGAGA----------G
CCATCGGCGGCGGCAGACCATCGTCTAAAGAGATAGTGAGATGGGGAGGTCGCCGTGCTGCGAGAAGGCGCACACCAACA
AGGGCGCCTGGACCAAGGAGGAGGACGACCGGCTCACCGCCTACATCAAGGCGCACGGCGAGGGCTGCTGGCGCTCCCTG
CCCAAGGCCGCGGGGCTGCTCCGCTGCGGCAAGAGCTGCCGCCTCCGCTGGATCAACTACCTCCGCCCCGACCTCAAGCG
CGGCAACTTCAGCGACGAGGAGGACGAGCTCATCATCAAGCTCCACAGCCTCCTGGGCAACAAGTACGTCCATCCATCGT
CGTATCCATAGCATATATAGCACCGATGGATGAACCATCCTCTGTTCTGTTCCACATGCATGGCCTTGTGAAAACATAGC
GCTGACAGTATTGTTTCTGTTTGACGAACGCAGATGGTCTCTGATAGCAGGGAGACTGCCGGGGAGGACGGACAACGAGA
TCAAGAACTACTGGAACACGCACATCAGGAGGAAGCTGACGAGCCGGGGGATCGACCCGGTGACCCACCGGGCGATCAAC
AGCGACCACGCCGCGTCCAACATCACCATATCCTTCGAGGCGGCGCAGAGGGACGACAAGGGCGCCGTGTTCCGGCGAGA
CGCCGAGCCCACCAAG------GCAGCGGCAGCGGCGATCACCCACGTCGACCACCATCACCGTAGCAACCCCCACCACC
AGATGGACTGGGGCCAGGGGAAGCCGCTCAAGTGCCCGGACCTGAACCTGGACCTGTGCATCAGCCCCCCGTCCCACGAG
GACCCCATGGTGGACACCAAGCCCGTCGTGAAGAGGGAGGCCGGCGCCGGCGTCGGCGTCGTGGGCCTCTGCTTCAGCTG
CAGCATGGGGCTCCCCAGGAGCACGGAGTGCAAGTGCAGCAGCTTCATGGGGCTCCGGACCGCCATGCTCGACTTCAGAA
GCATCGAGATGAAATGAGCAGAGC-----AGAGCACCCCCTCCCT------------CCTTTCTCCTGTGACTCTTGGAT
ATTGGTTTAGCCTGTAGGTGA-AAAATTACAGCGAGTGAAAGAGAGACAAGAAGAAGGGTGAGGATGATCTTG-------
-TGTTTCGCCAAGGTCATCTTCCTCTTCTCCTCCCCCCGCTGCTCTCTT-GTTGCTCCATTTTGTTTGTCCCGTTGTAAA
AAAAAGG--TACCGTTTGACTAATCATGAGCAATAATACTCTGGTGCTGGCTGGATCACTGTA-----------------
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-------------------TAAATTACAGTAGTGCTTTCAAGAAAGTGTAATAGTAATATGAAGGTGAGAATTCTTTT-G
GCAGGAGAGGAGAGGAGAGCAGACCAGA-TGGGCAGATTCAGTGTG-CCCGTGTGGGCGCTGATCTCGAGACCGGGGCAC
TGAACCGGGCAGAGGCAGACCCTGAGCCTGAGCGCGTGGGCGCATGTGAGCATTGCCTAATCCTGCATCCACGGCAAAGG
CAGCGGCTCGTGACACGCTTTGCGACCTGCTTTTCTTTTCGATGCCCAAACTTTGGGGTGGC-------TACATACACAC
ATAACCCTTTCTTTTCTCGCGAAAAT---GCATAACCTATTTTAGTCCATGTGAATATTTTTCGAATCGAAACCGCAGTC
TTAAGTAATTTTACATCCGTTGTTAAACATCGAAGAGCATGCCGTCAAACTTGTCTAACCTTTTTTACATACATAA-AAA
AAAAGCTTCTCTAACCTTGGCTCGTGATTGATTATAATAAGAAACAAAAGTAATTTGCTCTTGGCATATCCACACGCAAG
TGGCTAAAGGTAAGACCGTGTGT--ATCTGAAACCAGGTGTGTTCGTTCAGGGAGAAGGTGGTAATGGCATTAGTGTTGG
AGAGTCATGGTTACTGCCGTTAATGGACGAGCGGCTAACCACGGCAACAAAGAAAAGAGGAAGGTACCAGGACGGACAGG
AAGGTGACAAAGGGACAAGGGAACCATTTTAAAACGGGGCTTGCTGGTTAGGTAAGGCCAGCCCAGCCACCTCTTCTCTT
CTTCTAATCTAATCTA---------------------------------------
>chr5B_1
ATACAAATCATCTTCATGTCGACATGATTGTGTTGGAGAATCAAAACAG-CCCCCCATAGTCCATAGACGACATCAGGTA
GGACACACGAATTGCACTGCATCTGGGTCACAACTCACAACTCACAGGAGGTCCTAGAAAATGGCTCGGGGAATAGTCTC
CAACGTGGCACATATTCTTTCGTCTAAATAAAATTCTTGGCAGACAAATCATCATTGAGTTTGTGTCTTACAAAAAGATT
GGGA-TTCTGTATCCGATCTCGGTGATTGTCGATGCGGATAATTTACTTGTAGATTGAATGGGTTAGAGACCCCAGGCCT
GAGT-----------TTTGTGTGTGTTCCACGAGGAGTTTTTAGACAGGGAGGGCAGCATCAAGGGAAAGCGAGT----G
GGCGGGGAGATTGGGTGAACCTAATAATCCCCCGTAAACAAATTAGGAAGAGGGAGGCATCACGGGTGG--ATGCGGTTA
GTTAGCTGTTAAAAC---CGAACGAACGCGCCAAGAGGGTAGGCAGGGGGAGCTGGAGCTTACCTCACTTTACACCTACC
TGTGAGGCTTGTGAATCGGGCAAGTAGGCGGGCAAATGGAGCCTGTGTGTCCTGTGCCCGGTGGCTGGCTGTGTCATTGT
TGCCTTTCTATCTCCCTCTTTT----------TGTGCGTGTAATAAACTGGTAAACAAACCGGTGGGGTGATGAGTTGAG
GTGAGGTGAGGTGAGGTCATGACCTGGGGGAGAG----GGAGAGGGAGAGGGAGGGGGAGGCCTACCAGTGCTACCAGTA
CCAGCCTAACCTTTTTCCCACCAACTCAGCCTCTAGAAGACCTTCTTCCCCGAT------CCAGTCAAGTGCAGTGCCGC
CTATAAAGATCCGAGCCTCCGACTCACCCACCCCTCCCCGTAGCACTAGCCCCCAACAACAACAACAACAGCAGCACCAA
CTTCCACTCCTGCAA-----ACCCAACCCAACCCAACCCAACCCACCACCGAGCACAAGAAAA-GGAGAAGGAAGGTGTG
TCATCGGCGGCGGCAGACCGTC---TAAAGAGATAGCGAGATGGGGAGGTCGCCGTGCTGCGAGAAGGCGCACACCAACA
AGGGCGCCTGGACCAAGGAGGAGGACGACCGGCTCACCGCCTACATCAAGGCGCACGGCGAGGGCTGCTGGCGCTCCCTG
CCCAAGGCCGCGGGGCTGCTCCGCTGCGGCAAGAGCTGCCGCCTACGCTGGATCAACTACCTCCGCCCCGACCTCAAGCG
CGGCAACTTCAGCGACGAGGAGGACGAGCTCATCATCAAGCTCCACAGCCTCCTGGGCAACAAGTACGTCCATCGTCTA-
---ATCCATAGCATATATAGCTCCAATGAACGAACGATCCTCTGTTCTGCTCTACATGCATGGCCTTGTAAAAGCATAGC
TCTGACAGTATTGTTTCTGTTTGACGAACGCAGATGGTCCCTGATAGCCGGGAGACTGCCGGGGAGGACGGACAACGAGA
TCAAGAACTACTGGAACACGCACATCAGGAGGAAGCTCACGAGCCGGGGGATCGACCCGGTGACCCACCGGGCGATCAAC
AGCGACCACGCCGCGTCCAACATCACCATATCGTTTGAGGCGGCGCAGAGGGACGACAAGGGCGCCGTGTTCCGGCGAGA
CGCCGAGCCCACCAAGGTAGCGGCAGCGGCAGCGGCGATCACCCACGTCGACCACCATCACCGTAGCAACCCCCACCACC
AGATGGAGTGGGGCCAGGGGAAGGCGCTCAAGTGCCCGGACCTGAACCTGGACCTCTGCATCAGCCCCCCGTCCCACGAG
GACCCCATGGTGGACACCAAGCCCGTGGTGAAGAGGGAGGC---------------CGTCGTGGGCCTCTGCTTCAGCTG
CAGCATGGGGCTCCCCAGGAGCGCGGACTGCAAGTGCAGCAGCTTCATGGGGCTCCGGACCGCCATGCTCGACTTCAGAA
GCATCGAGATGAAATGAGCAGAGC-----AGAGCACCCCCTCCTCCCTGCTCCTCTCCCTCTCTCCTGTGACTCTTGGAT
ATTGGTTTAGCCTGTAGGTGAAAAAATTACAGCGAGTGAAAGAGAGACAAGAAGAAGGGTGAGGATGATCTTG-------
-TGTTTCGCCAAGATCATCTCCCTCTTCTCCTCCCCCCGCTGCTCTCTTGGTTGCTCCATTTTGTTTGTCCCGTTGTAAA
AAAAA---TTACCGTTTGACTGATCATGAGCAATAATACTCTGGTGCTGGCTGGCTCACTGTATAAGGCTGGTCATAGTG
GGAGTAACATAAGTAGTAACATAGATGCCACATAAGCAAAATTGATGATGTGGCAAGTAGTTAATGAGGAGAGAGGCAAA
TAGAGTAACATAATATGTTACCATCACATAGCGGTTTCCAATGCATAATGAGTCTACAAAGTAATAAATGAAGGCAACTA
TGTTACCACACCTATGACACTACCCACTATGAAGGTAGTAACATAGACTAGTAACATATGTATGTTACTAGTCTAAGTTA
CTCTCCACTATGACCAGCCTAAATTACAGCAGTGCTTTCAAGAAAGTGTAATAATAATATGAAGGTGAGAATTCTTTTTG
GCAGGAGAGGAGAGGAGTCTGTCCAG--ATGGCCAGATTCAGTGTGCCCCGTGTGGGCGTTGATCTCGAGACCGGGGCAC
TGGACCGGCCAGAAGCAGGC------CCTGAGCGCGTGGGCGCATGTGAGCGTTGCCTAATCCTGCATCCACGGCAAAGG
CAGCGGCTCGTGACACGCTTTGCGACCTGCTTT-CTTTTCGACGCCCTTTGGGATGCTACATACATACATACATACATAC
ATAACCCTTTTTTTTTTCCTTGCGAAAACGCATAACCTATTTTAGTCCATGTGAATATTTCTCGAATCGA--------TC
TAAAGTAATTTTACATCCGTTGTTAAACGGGC-AGATGATGACGTCCT--------------------------------
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>SNPs
-------------S-----------------------------------------S------------------------
--------------------SS-------------S---SSS--------------------------------------
-------------------S----------------------------------------------------S-------
-S------------------------------------------------------------------------------
----------------------------------S----------------------------------------SSSS-
-----------------S--------------------------------------------------------------
--------------------------S-----------------------------------------------------
---------------------------------------------------------------------------S----
------------S--------SSSSSSSSSSS----S---------------------------------S---------
--------------------------S-------------------------------------------------S---
------------------------------------------------------SSSSSS--------------------
----------------------S---------------------------------------------------------
---------------SSSSS------------------------------------------------------------
---------------------------S----------------------------------------------------
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---------------S----------------------------------------------------------------
---------------S-----------------------------------------------------S----------
----------S-----------------------------------S---------------------------------
---------------------------------------------------------S--S-------------------
----------------------------------------------------------------------S---------
---------------------------------------S---------------------------------------S
------------------------------------------------S-------------S-SS-SSSSS-S---S--
-------------------------S------------------------------------------------------
----------------------------------------------S---------------------S-----------
-----------------------S--------------------------------------------------------
------------------------SSSSS---------------------------------------------------
---------------------------------------------SS---------S-SSS------------SSSSSSS
S----------S----------S-SSSS--S-SSSS------------S----------------------S--------
-----SSS--------------------S---------------------S-----------------------------
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-----------------------------S------------------S------------------SS-----S-----
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-----S-----------------------------------------------SS--S----------------------
----S---------S-SSSSSS----S----------------------S---------------S--------------
--------------------S---------SS------------S-S-----S-----------S--SSSS-SS--S---
----------------S-----S-------------------------------------------------S-----S-
---S--S---S----S-------SS--S----------------SS--S---SS-----------S-SSSSSSS-S-S-S
-SS------------------------SS-S--------------S-S--SS--SSS-----------------------
-----------------------S--------S-S---------------------------------------------
----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_857
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-------------------------------------AGACCTTCTTCCCCGATCCA-----------------------
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>reverse_1749
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--------------------------------------------------------------------GTAGCAACCCCC
AGATGGAC------------------------------------------------------------------------
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>forward_979
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-------------------------------------------------------------------------------A
CTTCCACTCCTGCAAACCC-------------------------------------------------------------
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>reverse_2635
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--------------------------------------------------------------------------CTTTGG
CAGGAGAGGAGAGC------------------------------------------------------------------
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