>input_sequence_65351
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-----------------ATGGCTCCCAAGCGCCGCGGCAGCAAGGTGGTGAGCTCCGTGGTGAAGACCAAGGTGGTGGAG
GAGACCGTGGAGGTCGCCACCACCATCCTCCCCGCCTCCCAGTCCCAGTCCCAGCCCGACTCCGCCGCCCAGGAGGAGGA
CCTGCAGCAGCCGGAGGTCGTCGACGTCTCCCGCTCCCGCGACGTCCACGTCGAGGTCGTCACCACCCCCGACGCCCAGC
CCACCCACGGCGCCAAGAAGCAGCCCGCCTCCAAGAGGGGCGCCGCCAACGCCAAGCCGCCGGCCGGGCCGC---TGGTG
GTGCCGGTCTCGCCGTCACCACAGGAGCAGGAGGCCCAGCCGGCGGAGGAGCAGCAGCAGCAGCGCAAGAAAGGTGGCGG
CAAGACGCCGGCGTCGCTGCAGAGCCAGGAGACGCAGGAGAACCCCTACGCGTACCAG---GACGAGACCACCAAGAAGA
GGCCTGCAGAGGAGGACGACGGCGCTGAGCCTAATAAGCCGGAGGGCCCCGAGACGCCGACGCAGAAGAGGTCCAGGACC
GAGGGCAAGGCCAAGACGCGCAAGGCGGAGGCCGCGGCGAGGAAGAAGCTGTCCGCGGCGGCGGGCAAAGGAAAAGGCGG
GCGCCGCCGTCGTCGTC-TGGGAGGGAACAACGTCGACATGGGGTACAAGGCGTACGTGTACCGGGTGCTGAAGCAGGTG
CACCCGGACCTGGGCGCGTCGGGGAAGACGATGCAGGCGCTGGACATGATGATGGCGGACATGTTCGAGCGGCTGGCGAC
GGAGGCGTCGCGGCTGGCGCAGTACGCCGGGCGGGCCACGCTCACCTCCCGCGACGTGCAGAACGCGGTGCGCCTGGTGC
TCCCCGGCGAGCTCGCCAAGCACGCCATCTCCGAGGGCACCAAGGCCGTCACCATGTACATGTCCTGA------------
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>chr4B_1_TraesCS4B01G002800
GCCTACACATACGAAAATGGCGGCGGAATTCCTGATGTTTGAACAATGGGTTTGTTGTATCAAAGTAGTCCTTCCAAAGA
AGGAAATATCCGCTCTCTCGGTTGCGATTCAACGGCAGAAGGTGGCCCGGAATGAGGTGGTGATGGACCAACACGGCAGC
CAATATCTCCTCCTCGTCATCGGAGGACGAATCGTCGGAGTCGCAAAGGAAATTGTGAAAGAAAAACTCGTCGGCGGAGT
CCATTTTGTACCTTGGCAAACTGTCAAACAGCTTGCGGACGTTGGCGAAGGAGACGGCCGACGAAGGGAGTTGCGGCGCA
CACGAACCAGCTAGCTGTCCTGCCGGCGTCCGACGAGCGTTCTGGCTTCCGACGAGCATGCCGGTGAGGATCTGGCCGGA
CGGCGAGGCGGCTTCTTGGTCGGGAGCGGCTGTGCGGTGGGGGGCGCGGGGTGGAAAGTAGTCGGCTCCCGGCGGCAAGA
CGACGGTGACGGACGAGGTGGGAGTGGGCGGCGTAACGCGTCCAGAGCTTGCATGGCCATGGCGTTACAGACAGTCAATA
CTCTACCTGACGGCGAAGACTAGTCTGGAAGAGCCAAAATAAATGAAAATTATTAATTCAAACAGCCGAAATTTGAATTG
CTCTCGCGCGTTCCAACCAAAAGGAAGGAAGCTGCAAGCAAGTTCCAGAAAGAGGCCACCGTGCATGCCATGCAATGCAA
TGGCATTGAGAC-----------AGCGGCCACACACGGAGCCCAAGGTGGCGGAAAACC----GCTCACTGTAGTACCAC
AGTGAGTGTTCTGGACAGTTTCTTACCG--------CCTCCGCGTGTTACCACGTCGCCGGCCTCA----------CCCC
TGCCGCGTGTCCGACCACCCTACACGTGCCCCTCCGGCCTCCCTCCATAAGTACACCAGCTCCGGCCAGCTGCGAAGCTC
ACTCCACCCAACACACTTGTGCAAGCCACTTCAC-----TCTCAGTCCACT----------------CACCAGCAGAGCA
GTAGT---AGTAGCGAGATGGCTCCCAAGCGCCGCGGCAGCAAGGTGGTGAGCTCCGTGGTGAAGACCAAGGTGGTGGAG
GAGACCGTGGAGGTCGCCACCACCATCCTCCCCGCCTCCCAGTCCCAGTCCCAGCCCGACTCCGCCGCCCAGGAGGAGGA
CCTGCAGCAGCCGGAGGTCGTCGACGTCTCCCGCTCCCGCGACGTCCACGTCGAGGTCGTCACCACCCCCGACGCCCAGC
CCACCCACGGCGCCAAGAAGCAGCCCGCCTCCAAGAGGGGCGCCGCCAACGCCAAGCCGCCGGCCGGGCCGC---TGGTG
GTGCCGGTCTCGCCGTCACCACAGGAGCAGGAGGCCCAGCCGGCGGAGGAGCAGCAGCAGCAGCGCAAGAAAGGTGGCGG
CAAGACGCCGGCGTCGCTGCAGAGCCAGGAGACGCAGGAGAACCCCTACGCGTACCAG---GACGAGACCACCAAGAAGA
GGCCTGCAGAGGAGGACGACGGCGCTGAGCCTAATAAGCCGGAGGGCCCCGAGACGCCGACGCAGAAGAGGTCCAGGACC
GAGGGCAAGGCCAAGACGCGCAAGGCGGAGGCCGCGGCGAGGAAGAAGCTGTCCGCGGCGGCGGGCAAAGGAAAAGGCGG
GCGCCGCCGTCGTCGTC-TGGGAGGGAACAACGTCGACATGGGGTACAAGGCGTACGTGTACCGGGTGCTGAAGCAGGTG
CACCCGGACCTGGGCGCGTCGGGGAAGACGATGCAGGCGCTGGACATGATGATGGCGGACATGTTCGAGCGGCTGGCGAC
GGAGGCGTCGCGGCTGGCGCAGTACGCCGGGCGGGCCACGCTCACCTCCCGCGACGTGCAGAACGCGGTGCGCCTGGTGC
TCCCCGGCGAGCTCGCCAAGCACGCCATCTCCGAGGGCACCAAGGCCGTCACCATGTACATGTCCTGAAGGCCCAAACAT
CTCAAAGATCCACCCGTCGGTCAGAAGCAG------AGGGTGCATGCTGG---------TAGTAGTCAGTTCGGTTTAGT
TGTGTTTCCGTGGC-------------ATGGTTCGGTCTGGACTTTTGCAATGCGGTAGTAGTTTTAAGTTGGTGGCTGA
TCGATGATGTAGTCTAGTTAGTTGGTTAATTACTAGTTACTGTTGAATGTTGATGTAGTGGCGCTAGCGCTTAAGGTTCA
ACTTAAACTGTTGGTCAT---------------GTATATTTCTGTTGGTCATGTATTGTGTGCATGGTTCAGTTGGTGCT
AGATGAGATGACCACCGAGTAAATTAGTTGCAAGTTCAATTAAGCAGGTTTACATTTTTCGATCTAATGGTTTATGGTTG
TATGCATGTTGTGTGTGTTGTAGCAAATT---GAGTCCGTAATTTGTTATGTGAGTGGCTGGCTACCGACG-----CAGG
AACTTGCTAGACACGTGAACAAACATAT--AGCCATGCATGCACAGACTATATATGTCAGACTTGTCCATTATCATATGT
GCCAAAACATCTAAAATGTGTACGGATGGAGTACGTACTACTGTGCCTGGTCATTCTGTAAATCTGAAATCATTTAATCG
TCGTGCCGGTGTACTAGCTTAGTATCACTAGTTGGCCACATTCGGGCACCACCCGGGGCTTTGATCTGAGCCCCCTCCCA
CAGGCGCTATATAATTCTTGTACAGCGTCAAAATAGCCTCCTCTTTTACAGCGTCAAAATAGTCTTTTTCGCGTGAGGAC
TATTTTCGCGTGAGGTTTTCTAGATGCACAAAGAGGTTTACTAGATACACAAATGCATAAAAATATGACGCCCAATCCGC
GGCACCAAATTTTGGGGCGGAAGTAGGGCTGGAATTCGGGCCCAGTCAAGCCAGCTCGGCTCGTTTCGTTAATGAGCAAG
CTCGACTCGATTCGTTACTATAACGAGCTCAAACCCAAGATTAGCTCGACTTGTATAACTCGCGAGCTGGCTCGTTTAAC
T
>chr4A_615
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------------------------------------------------------AATTCAGACAGCCAGAATTTGAATTG
CTGTCGCGCGTTCCAACC--AAGGAAGGAAGGTGCAAGCTTGTTCCAGAAAGAGGCCACCGTGCATGCCATGCAAACGCA
AACGCAAACGCAATGCAGCT-----CGGTCACACACAGAGCCCAAGACGGTGG---------------------------
--------------ACAGTTTCTTACCGCCTCCTTCCCTCCGCGTGTTACCACGTCGCCGGCCGGTCTCACCTCTGCCGC
TGCCGCGTGTCCGGCCACCCTACACGTGCCCCTCCCACCTTCCTCCATAAGTACGCCAGCTGCCG----------AGCTC
ACTTCGTCCAACACACTTGTGCAACCCACTTCACCTCACGCTCAGTCCCAGTACACTCCACAGTCCACACTAGCAAAGCA
GTAGCAAGAGTAGCGAGATGGCTCCCAAGCGCCGCGGCAGCAAGGTGGTCAGCTCCGTCGTCAAGACCAAGGTGGTGGGG
GAGACCGTGGAGGTCGCCACCACCATCCTCCCCGCCTCCCAG---------------------------------GACGA
CCCGCAGCC-----------------------------------------------------------------------
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-------GGAGGAGGACGACGGCGAGCCGAC---CAAGCCGGAGGGCCCCGAGACGCCGACGCAGAAGAGGGCGAGGAGC
GAGGGCAAGGCCAGGACGCGCAAGGCGGAGGCGGCGGCGAGGAAGAACAT------------GGGAAAAGGAAGAGGCGG
GCGGCGTCGTCGTCGGCTTGGGAGGGAACAACATCGACATGGGGTACAAGGCGTACGTGTACCGGGTGCTGAAGCAGGTG
CACCCGGACCTGGGGGCGTCGGGGAAGACGATGCAGGCGCTGGACATGATGATGGCGGACATGTTCGAGCGGCTGGCCAC
GGAGGCGTCGCGGCTGGCGCAGTACGCCGGGCGCGCCACGCTCACGTCCCGCGACGTGCAGAACGCGGTGCGGCTGGTGC
TCCCCGGCGAGCTCACCAAGCACGCCATCTCCGAGGGCACCAAGGCCGTCACCATGTACACGTCCTGAAGTGTACATGTT
AACAAGTGAAGATCCCTCCGTAAGAAGCAGGGCAGCAGGGTGCATGCTAGTACTCCTACTAGTAGTTGGTTCAGTTTAGT
TGTGTTTCCGATGGCATGATTGCATGTATGGTTCAGTCTGGACTTACTTTTGGAA--AGTAGTTTTAAGTTGGTGGCAGA
TGATGTACCTAGTGTAGTTAGTTGGTCAATTAGTTGCTGTTGATGTA-------GTAGTGGCGCTAGCGCTAATATAATG
GTGCCTCCCTGCTTAAATTAGTACTAGCCAGTAGTATATTTCTGTTGGTCAT----TGTGTGCATGCTTCAGTTGGTG--
--------------------------------------------------TACATTTTTCGATCTAATGGG-------TG
TATGCATGTTGTGTGT--TGTAGCAAATGAGAGAGTCCGTAATTAGTTATGTGAGTGGGGGGCTAACCACACATGACAGG
AACTTGCTAGACACGTGAACAAACATATAAAGCCATGCATGCAGAGA---------------------------------
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>chr4D_678
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-------------------------------------GCAAGTTCCAGAAAGAGGCCACCGTGCATGCCATGCAA-----
--------CGCAATGCAGCTGGGAGCGGCCACACACAGAGCCCAAGGTGGTGGAAAACCCTATGCTCACTGTACTCTAGT
A-------------ACAGTTTCTTACCGCC----TCCCTCCGCGTGTTACCACGTCGCCGGTCTCATG----------CC
TGCCGCGTGTCCGACCACCCTACACGTGCCCCTCCCGCCTTCCTCCATAAGTACACGAGCTGCCA----------GGCTC
ACTTCGTCCAACACACTTGTGCAACCCACTTCACCTCACTCTCAGTCCCAGTACACTCCACAGTCCACACTAGCAAAGCG
GTAGGAAGAGTAGCC--ATGGCTCCGAAGCGCCGCGGCAGCAAGGTGGTGAGCTCCGTCGTCAAGACCAAGGTGGTGGAG
GAGACCGTGGAGGTCGCCACCACCATCCTCCCCGCCTCCCAG------TCCCAGCCCGACTCCGCCGACCT---------
------GCAGCCGGAGGTCGTCGACGTCTCCCGCTCCCGCGACGTGCACGTCGAGGTCGTCACCACCCCGGATGCCCAGC
CCACCGCCGGCGCCAAGAAGCAGCCCGCCTCCAAGAGGGGCGCCGCCAACGCCAAGTCGCCGGCCGCGCCGCTGGTGGTG
GTGCCGGTCTCGCCGGAAGAGG---------------------------------AGCAGCAGCGCAAGAAAGGCGGCAG
CAAGACGCCGGCGTCGCTGCAGAGCCAGGAGACGCAGGAGGAGCCCTACGCGTACCAGGGCGACGAGACCACCAAGAAGA
GGCCGCAGGAGGAGCAGGACGGCGCTGAGCCTAACAAGCCGGAGGGCCCCGAGACGCCGACGCAGAAGAGGTCCAGGGGC
GAGGGCAAGGCCAAGACGCGCAAGGCGGAGGCCGCAGCAAGGAAGAAGCTGTCCGCGGCGGCGGGGAAG---AAGGGCGG
GCGGCGTCGGCGTCGGC-TGGGAGGGAACACGGTGGACATGGGGTACAAGGCGTACGTGTACCGGGTGCTGAAGCAGGTG
CACCCGGACCTGGGCGCGTCGGGGAAGACGATGCAGGCGCTGGACATGATGATGGCGGACATGTTCGAGCGGCTGGCCAC
GGAGGCGTCGCGGCTGACGCAGTACGCGGGGCGCGCCACGCTCACCTCCCGCGACGTGCAGAACGCGGTGCGCCTGGTGC
TCCCCGGCGAGCTCGCCAAGCACGCCATCTCCGAGGGCACCAAGGCCGTCACCATGTACACGTCCT--------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S------SS-----------
--S---------------SS-----------S-------------------------------------------SSSS-
SSSSSSSSS-SS------------------------S-------------S----------------------S-SSSSS
-SSSSSSSSSSSSS------------------------------------------------------------------
-----------------------------------S----S--------------------S-S-SSSSSSSSSS-----
---S-SS-----------------S-----------------------SSS-------------------S----S----
----S-----------------------------------------------------S--S------------------
------------------------------------------SSSSSS-------------------S--SSSSS--S--
--S------------------------------------------S-----------------------S--S-------
-----SS-------------------------------------------------S---------S-------------
---------------SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------S---S-
----------------------------------------S-S-------------------------------------
----SSSS--------------------------S-------------------------------------------S-
-----------------------------------------------------------------S--------------
---S--S--------S----------------------------------------------------------------
-----------------------------------------------------------------------------S--
---------------------------------S----------------------------------------------
------------------------------------------------------------S---------SSSSS-SSS-
SS---SSSSSS-S--S--S--S--------------------------S-----------------SS----S-------
----------SS-S--------------------S----------SSSSSSS-SSSS--------------------S--
-SSSSS-SS----S------------S-----S-S-S-SS--S--S-SSSSSSS-----------------S-SSSSSSS
SSSSSSS-SSSSSSSS------------------------------------SSSS----------S-----------SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------SSSSSSSS--
----------------SS----------S---------------S-------------SS-----S-S--S---------
-------------------------------------------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S
>forward_1036
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--------------------------------------------------------CTCAGTCCACTCACCAGCAG----
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>reverse_3013
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----------------------------------------------------GTATAACTCGCGAGCTGGCT--------
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