>input_sequence_65321
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---------------------ATGAACTGCTCCTTCCTCAAGGCGGCGGCGGTCGCCGTGGTCGTGGCGGTTCTGGCGGC
CACGGCCGGCGCAAACTCCTTCGTCTCCGTGGCGCCTCTCCCCGCCGTTTTCCTCTTCTCCCCTCCCTGCTTCCTGTGGA
TCGCCGCCAACGTCATCGTCGTCTGGCTCCTTTCCTCCTGCCGCCACCGCGGAACAGCCGTCGCGGCCGGACTCTCGTCC
ACGGCCAGCGACGTATCCGCTGCCATGGGCGGCATGCTCTTCCCTCCGTTGGAACACGACGTCTTTGCTGCCGCTCCTGA
TGACGTCGTCGCGCCGCCGGCGCCGGTCTCGACGAGCCGGCCGCGGGAAGCGAGAACGGCTAAGAGGCCGGTCGACCGCC
CCCGCGTGCGGAAGAAACTCGCCGGCGAGGGCACGGTCACGGTGGGAGGCGCCGTGGCGGAGGCCAAGCCCAAGGGCAAG
AAGGAACACATCGAGGAGGAGAAGCCGAGGCCCTCGGCCGCCGCGA------CCGAGGCCAAGGCCGTTGGCGTGGACGA
CGTGTCTATGGACACGGCGTGGCAGTCCATCGTGAGGAGCGGCGCGGCGCGGCCGGTGGCCGTGCGGAAGAGCGAGACGT
GGGGCGGCGAGGAGCTGCCGCGCATGCGGCGCGCGGCCGACAAGGCCGTGGTCGCGCGGAGGGAGATGCGTAAGTCAGCC
ACGATGGTCCCGCCCTCCCCGCCGCACCCGGCCGCGGCGTCGTCCCCGGTGGCGGAGAGGCAGGGGTGGCGCACCAGGGA
CGTGCTGGGGATGGCGCAGGACGAACTCCTCCGCCGCGCCGAGAGCTTCATCCGGAGGCAGCACGAGCACCTGCGCATGC
AGCGGCAGGAGTCCGAGCAGCGGCAGGCCATGGAGCGCGACCGCCGCCGCCCTGCTCCCATCCGCGTCTAG---------
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>chr1A_1_TraesCS1A01G163000
GGGAGTAGCTTTCTTTCTTGGTGTGTGTG----TGTGATACGATGACACGGTGCACAGGATGCTGGCGCTAAAGAAGACC
CAGGGCCCGTAAGTCATGGGTACCTCTGTTTTAGGACAAGTCATGGGTATCTCTTGTGTTAACCATCATAGAT-------
------------------------------ACCTCAAAAAACAAGCAGCGATAAT----GCGGTCTCAACCAACCAAAAC
CAAAACTAAAACCCAAGTGGGTGGGTATTGAGTATTGACACACCGTCATGCAGCTGACGTATGTGTATATGGCGCCCTA-
--TTTCCAGCTCCACCCTTGGCTGAATCATGCATGCTTGTC----TCCATTTCTTCGTATATAT-GGTCTGTAGAAAATG
CAGTTATACTCGCTCTGTAC------AAGGGATCGACGACTGGTTCAGTACTCAATAATGATTCACAGCGAAAACACGGC
ATGCGTGCTGCATATTGTATTCATCCACCATACTATGCACTGTTAGTAGTTGATAGTATATGGGTGTTTGATTGACTGAC
CTCGCGAGACGACCGGACTCCGCGCCCTACTATCAACTGCGGTTAAACCTGCTC----------TCTTCCTCCTTAATCA
AACCATTTAGTACCTGCATTATGTGGGTTACTTTCAAGTTAGTAGTAGTACTATATATGTTAAGCTGTAGCC-TGTTCCA
CTCAGGTAAGAACGGTCGCAGCACGAGCGGAGCGTATTCACACCGGCCGGGTGCAACGTTGGATATTCC-----TTATTT
TGTTCTTTTCCTCGAAACTTATTTACTTTGGAAATTACTCTACCAGTTGAGGCTGAGAAGATGAAAATATCTTGTTTAAA
GATAAAGAAAAGATGAAAATATCTTTAGCGTGCGCTTTATGCTTTTGAGAGAGGTCAGTCCGTCAGTACCTCAGCTCCTT
CTCCCGCCCCGGCTATATAAGCG-ACTCGACCCACACATTCATCGCTCCCCCCCTCCTTGCACGCCATCGAGA-------
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----------------------------------------------------------GCCATCCTCCCCCCTCTCGCGG
TCTAGTATGCTCTTGCCCGAGATGAACTGCTCCTTCCTCAAGGCGGCGGCGGTCGCCGTGGTCGTGGCGGTTCTGGCGGC
CACGGCCGGCGCAAACTCCTTCGTCTCCGTGGCGCCTCTCCCCGCCGTTTTCCTCTTCTCCCCTCCCTGCTTCCTGTGGA
TCGCCGCCAACGTCATCGTCGTCTGGCTCCTTTCCTCCTGCCGCCACCGCGGAACAGCCGTCGCGGCCGGACTCTCGTCC
ACGGCCAGCGACGTATCCGCTGCCATGGGCGGCATGCTCTTCCCTCCGTTGGAACACGACGTCTTTGCTGCCGCTCCTGA
TGACGTCGTCGCGCCGCCGGCGCCGGTCTCGACGAGCCGGCCGCGGGAAGCGAGAACGGCTAAGAGGCCGGTCGACCGCC
CCCGCGTGCGGAAGAAACTCGCCGGCGAGGGCACGGTCACGGTGGGAGGCGCCGTGGCGGAGGCCAAGCCCAAGGGCAAG
AAGGAACACATCGAGGAGGAGAAGCCGAGGCCCTCGGCCGCCGCGA------CCGAGGCCAAGGCCGTTGGCGTGGACGA
CGTGTCTATGGACACGGCGTGGCAGTCCATCGTGAGGAGCGGCGCGGCGCGGCCGGTGGCCGTGCGGAAGAGCGAGACGT
GGGGCGGCGAGGAGCTGCCGCGCATGCGGCGCGCGGCCGACAAGGCCGTGGTCGCGCGGAGGGAGATGCGTAAGTCAGCC
ACGATGGTCCCGCCCTCCCCGCCGCACCCGGCCGCGGCGTCGTCCCCGGTGGCGGAGAGGCAGGGGTGGCGCACCAGGGA
CGTGCTGGGGATGGCGCAGGACGAACTCCTCCGCCGCGCCGAGAGCTTCATCCGGAGGCAGCACGAGCACCTGCGCATGC
AGCGGCAGGAGTCCGAGCAGCGGCAGGCCATGGAGCGCGACCGCCGCCGCCCTGCTCCCATCCGCGTCTAGTCGCCGGCC
AGCACGACATGCATCGCACATCGCCTATGCACGC--GTAGCGTACGTACGTGCTAATCCATCCAC---AGGATGGATGGA
TGCACGCGTCCATGCATGTACGGAAGGAAGACTGTACAGAAGTTGGTCAGCTAGCTAGCCGTACTAGCATAATCATCAAG
AGACAAAGATGCCTGCCGCCATTGCATGCCTAGAAGGAACGATGGAAGGACTACGTAGGTACAGGGGG--AGGATCCGGC
CATGGCTGTCTAGCTACGTAGCACACTGAAGCAGTACTGGTCTGGTCATGCACCGCGTCCTGCAGCTTCGGTCGTTGTAG
ATTAAATCCGTATGTACGTAGGATCATGGTTGAGTGAGTGAGGAATCAACGCTACATGTAAGTTACTTTAACCTCTAAAT
AAATGAAGAGCGGTAGCCGTTTCTTTGTTCTTTTGCTCAATTTTGCTGTTTCAAATTCTCGG-AGACCCCTGTCCGTAGC
GCAAGAATTTCGTAGGAAATCCACAAGAAAATTCATCTCACTTGCCTTGTTCATCA-------CAAAGGATGTGTGCTTG
ATAGCTGAATAGGTAGATGTGAGCATGCTTGAGATTAAGGGCCTCTTGCATCAAGTGGATTTTGGATTTCACTGATTTAG
TATAACTTTGTACCGTATCAATAATAATTAATATTGATTGAAGGGAGTAAAGGATTAAAATCGTAAGGAAATTTTCTAAC
TATCCCTGATCGTAGGATTGCAAACCTCGTTGCATAAGAGTTGCGGCCAGCCTATTTGGATCGTGAAATTCAAATTGGAT
CATGAGAAGAAAAAAGACAAGAATATAATAGGAGTGCATGCACAAAAAGAGGATTGTAAAATGCGGGAATCTTGAAACTT
GGGTATTTGGTCCACAAAAATAGAAAAGCATGTTGATCTTAATAAGCACAATCAAAGTAA---------------AGTCA
AACCATATGAAAATATATAATTAGGATATTATTAGACCTTTACGTACGAATTACTAAAGGA
>chr1D_2
GGACGTAGCTTTCTTCCTTGGTGTGTGTGAGAGTGTGATACGATAACACGGTGTACATGATGCTGGCGCTAAAGAAGACC
CAAGGCCAATAGGTCATGGGCACCTCTGTTTTAGGATAAGTCATGGGTATCTCTTGTGTTAACCATCATACATACAGCAC
TAGTACTAGTACTTGATTGACAAGGCCGCCACCTCAAAAAACAAGAAGTGATAATGCGCGCGGTCTCAACCAACCAAAAC
CAAAACCAAAACCCAAGTGGGTGGGTATTGA-------CACATCGCCATGCAGCTGACGTATGTATATATGGCGCCCTAT
TTTTTCCAGCTCCACCCTTGGCTGAATCATGCATGCTTGCTTGTTTCCATTTCTTCGTATATAT-GGTCTATAGAAAATA
GAGTTATACTCGCTCTGTACAAGGGGAAGGGATCGACGACTGGTTCAGTACTCAATAATGGTTCACAGCGAAAACACGGC
ATGCGTGC---ATATTGTATTCATCCACCATACTATGCACTAGGAGTAGTTGATAGTATATGGGTGTTTGATTGACTGAC
CTCGCGAGACGACCGGACTCCGCACCCTACTATCAACTGCGGTTAAACCTGCTCATTGCTTCTCTCTTCCTCCTTAATCA
AACCATTTAATACCTGCATTATGTGGGTTACTTTCAAGTTAGTAGTAGTACTATATATGTTAAGCTGTAGCTTTGTTCCA
CTCAGTTAAGAACGGTCGTAGCACGAGCGGGGCGTATTCACACCGG----GTGCAACATTGGATATTCC-----TTTTTT
TGTTCTTTTCCTCGGAACTTATTTATTTCGGAAATTACTCTACCAGTTGAGGCTGAGAAGATGAAAATATCTTGTTTAAA
GAC------AAGATGAAAATATCTTTAGCGTGCGCTTTATGCTTTTGAGAGGGGTCAGTCCGTCAGAACCTCGGCTCCTC
CTCCCGTCCCGGCTATATATAAGCACTCGACCCACACATCCATCGCTCCCCCCCCTCTTGCACT----------------
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--------------------------------------------------------------------CCCCTCTCGCAG
TCAAGTCTGGTCTTGCCCGAGATGAACTGCTCCTTCCTCAAGGCGGCGGCGGTCGCCGTGGTCGTGGCCGTCCTGGCGGC
CACGGCCGGCGCAAACTCCTTCGTCTCGGCCCCGCCTCTCCCCACCGTTTTCCTCTTCTCCCCTCCCTGCGTCCTGTGGA
TCGCCGCCCAGGTCATCGTCGTCTCGCTCTGGCTCCTTT---GCCACCGCGGAACCGCCGTTGCGGCCGGACTCTCGTCC
ACGGCCAGCGACGTTTCCGCTGCCATGGGCGGCATGCTCTTCCCTTCCTCGGAACACGACGTCTTTGCTGCCGCTCCTGA
CGCCGTCGTCGCGCCGCCGGCGCCCGTCTCGACGAGCCGGCCGCGGGAAGCGAGAACGGCCAAGAGGCCGGTTGACCGCC
CCCGCGTGCGGAAGAAGCTCGCCGGCGAGGGCACGGCCACGGTGGGAGGCGCCGCGGCGGAGGCCAAGCCCGAGGCCAAG
AAGGAACGCAGCGAGGAGGAGAAGCCGAGGCCCTCTGCCGCCGCGA------CCGAG------GCCGTTGGCGTGGACGA
CGTGTCGATGGACTCGGCGTGGCAGTCCATCGTGAGGAGCGGCGCGGCGCGGCCGGTGGCCGTGCGGAAGAGCGAGACGT
GGGGCGGCGAGGAGCTGCCGCGGATGCGGCGCGCGGCCGACAAGGCCGTGGTCGCGCGGAGGGAGATGCGTAAGTCGGCC
ACGATGGTCCCGCCTTCCCCGCCGCACCCGGCCGCGGCGTCGTCCCCGGTGGCGGAGAGGCAGGGGTGGCGCACCAGGGA
CGTGCTGGGGATGGCGCAGGACGAGCTCCTTCGCCGCGCCGAGAGCTTCATCCGGAGGCAGCACGAGCACCTGCGCATGC
AGCGGCAGGAGTCAGAGCAGCGGCAGGCCATGGAGCGCGACCGCCGCCGCCCTGCTCCCATCCGCGTCTAGTGGCCGGTC
AGCACGACATGCATCGCACATCGCCTATGCACGCGTGTAGCGTACGTACGTGCTAATCCATCCACCACAGGATGGATGGA
TGCACGTGTCCATGCACGCACGGAAGGGAGACTGTACAGAAGTTGGTCAGCTAGCTAGCCCTACTAGCATCATCATCAAG
AGACAAAGATGACTGCCGCCATTGCATGCCTAGATGGAACGATGGAAGGACTGCGTAGGTAG-------AAGGATCCGGC
CATGGCTGTCTAGCTACGTTGCACACTGAAGCAGTACTGTTCTGGTCATGCACCGCGTCCTGCAGCTTCGATCGATGTAG
ATTAAATCCGTATGTACGTAAGATTATGGT----TGAGTGAGGAATCAACGCTACATGTAAGTTATTTTAACCTCTAAAT
AAATGAAGAGTGGTAGCCGTTTCTTTGTTCTTTTGCTCAATTTTGTTGTTTCAAATTTTC-G-AGACCCCTGTCCGTAGC
GCAAGAATTTCGTAGGAAATCCACAAGAAAATTCATCTCACTTGCCTTGTTCATCAATCATCACAAAGGATGTGTGCTTG
ATAACTGAATAGGTAGATGTGAGCATGCTTGAGATTGAGGGCCTCTTGCATTAAGCGGATTCTGGATTTCACTGATCTAG
TATAACTTTGTACTGAATCAATAATAATTAATATAGATTGGAGGGAGTAGAGGATTAAAATCGTAAGGAAATTTTCTTCC
TATCCCTAATCGTAGGATTGCAAACCTCGTTGCATAAGAGT--------------------------------ATAGGAT
CATGAGAAGAAACAAGACAAGAATATAATAAGAGTGCGTGCACAAAAAAAGGATTGTAAAATGCGGGAATCTTGAGACTT
GGGTATTTGGTCCACAGAAATAGGAAAGCATGTTGATCTTAATAAGCACAATCAAAGTAA---------------AGTCA
AATCATATGAAAATATATAATTAGGATATTATTAGACCTTTATGTACGAATTACTAAAGGA
>chr1B_65
--------------------------------------------------------------------CTAAAGAAGACC
CAAGGCCCGTAAGTCATGGGTACCTTTGTTTTAGGATAGGTCATGGGTATCTCTTGTGTTAACCATCATACATAGAGTAC
-AGTACTAGTACTTGATTGACAAGGCCGCCACCTCAAAAAACAAGCAGTGATAAT----GCGGTCTCAACCAATCAAAAC
CAAAACCAAAACCCAAGTGGGTG-------AGTATTGACACATGGTCATGCAGCTGACGTATGTATATATGGCGCCCTAT
TT---CCAGCTCCACCCTTGGCTGAATCATGCATGCATGCTTGTTTCCATTTCTTCGTATATATTGGTCTGTAGAAAATA
CAGTTATACTCGCTCTGTACAAGGGAC------CGACGACTGGTTCAGTACTCAATAATGGTTCACAGCGAAAACACGGC
ATGCGTGC---ATATTGTATTCATCCACCATACTATGCACCGGTAGTAGA------TATATGGGTGTTTGATTGACTGAC
CTCGCGAGACGACCGGACTCCGCGCCCTACTATCAACTGCGGTTAAACCTGCTCATTGCTTCTCTCTTCCTCCTTAATCA
AACCATTTAATACCTGCATTATGTGGGTTACTTTCAAGTTAGTA---------TATATGTTAAGCTGTAGCC-TGTTGCA
CTCAGTTAAGCACGGTCGCAGCACGAGCGGAGCGTATTCACACCGGCCGGGTGCAACATTGGATATTCCGTTCCTTATTT
TGTTC-TTTCCTCGAAACTTGTTTATTTTGGAAATTACTCTACCAGTTGAGGCTGAGAAGATGAAAATATCTTGTTTAAA
AAG------AAGATGGAAATATCTTTAGCGTGCGCTTTATGCTTTTGAGAGAGGTCAGTCCGTCAGTACCTCAGCTCCTC
CTCCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGCACGCCATCCTCCCCCCTCTCGTGG
CCTAGCAC-GTCTTCCCCGAGATGAACTGCTCCTTCCTCAGGGCAGCGGCGGTCGCCGTGGTCGTGGCCGTCCTGGTGGC
CACGGCGGGCGCAGCCTCCTTCGTCTCCGTCGCGCCTCTCCCCTCCGTTCTCCTCTTCTCCCGTCCCTGCGTCCTGTGGA
TCGCCGCCAACGTCATCGTCGTCTCGCTCTGGCTCCTTT---GCCACCGCGGAACCGCCGTCGCGGCCGGACTCCCGTCC
GCGGCCAGCGACGTATCCGCTGCCATGGGCGGCATGCTCTTTCCTTCCTCGGAACACGACGTCTTTGCTGCCGCTCCTGA
CGCCGTCGTCGCGCCGCCGGCGCCGGTCTCGACGAGCCGGCCGCGGGAAGCGAGAACGGCCAAGAGGCCGGTCGACCGCC
CCCGCGTGCGGAAGAAGCTCGCCGGCGAGGGCACGGCCACGGTGGGAGCCGCCGCGGCGGAGGCCAAGCCCGAGGGCAAG
AAGGAACGCAGCGAGGAGGAGACGCCGACAGCCTCCGCCGCTGCGACTGAGTCCGAG------GCAGTTGGCGTCGACGA
CGTGTCCATGGACTCGGCGTGGCAGTCCATCGTGAGGAGCGGCGCGGCGCGGCCGGTGGCCGTGCGGAAGAGCGAGACGT
GGGGCGGCGAGGAGCTGCCGCGGATGCGGCGCGCGGCCGACAAGGCCGTGGTCGCGCGGAGGGAGATGCGGAAGTCGGCC
ACGATGGTCCCGGCCTCCCCGCCGCACCCGGCCGCGGCGTCGTCCCCGGTGGCGGCGAGGCAGGGGTGGCGCACCAGGGA
CGTGCTGGGGATGGCGCAGGACGAGCTCCTCCGCCGCGCCGAGAGCTTCATCCGGAGGCAGCACGAGCACCTGCGCATGC
AGCGGCAGGAGTCCGAGCAGCGCCAGGCCATGGAGCGCGACCGCCGCCGCCCTGCCCCCATCCGCGTCTAGTAGCCGGCC
AGCACGACATGCATCGCACATCGCCTATGCACGCGT--AGCGTACGTACGTGCTAATCCATCCAC---GGGATGGATGGA
TGCACGCGTCCATGCACGTACGGAAGGAAGACTGTACAGAAGTTGGTCAGCTAGCTAGCCCTAGTAGCATCATCATCAAG
AGACAAAGAGGCCTGCCGCCATCGCACGCCTAGATGGAACGATGGAAGGACTGCGTACGTAGGTAGAGAAAGGATTCGGC
CATGGCTGTCTAGCTACGTTGCACACTGAAGCAGTACTGGTCTGGTCATGCACCGCGTCCTGCAGCTTCGATCGACGTAG
ATTAAATCCGTATGTACGTAAGATTATGGT----TGAGTGAGGAATCAACGCTACATGTACGTTATTTTAACCTCTAAAT
AAATGAAGAGCGGTAGCCGTTTCTTTGTTCTTTTGCTCAATTTTGCTGTTTCAAATTTTC-GGAGACCCCTGTCCGTAGC
GCAACAATTTC-TAGGAAATCCACAAGAAAATTCATCTCACTTGCCTTGC-------TCATCACAAAGGATGTGTGCTTG
ATAACTGAACAGGTAGCTGTGAGCA---------------------TGCATCAAGGGGATTCTGGATTTCACTGATTTAG
TACAATTTTGTACTGAATCAATAATAATTAATATGGATTGGAGGGAGTAGAGGATTAAAATTGTAAGGAAATTTTCTTCC
TGTCCCTGATCGTAGGATTGCAAACCTCGTTGCATAAGAGATGCGGCCAGCCTCTTTGGATCGTAAAATTCAAATAGGAT
CATGAGAAGAAAAAAGACAAGACTATAATAGGAGTGCATGCACAAAAAAACAATAGTAAAATGCGAGAATCTTGAAACTT
GGGTATTTGGTCCACAGAAATAGAAAAACATGTTGATCTTAATAAGCGCAATCAAAGTAAGCGCAATCAAAGTAAAGTCA
AACCATATGAAAATATATAATTAGGATATTATTAGACCTTT--------------------
>SNPs
--SS-----------S----------------------------S--------S---S----------------------
--S---------------------------------S---------------------------------S---------
------------------------------------------------S-------------------------------
------S-----------------------------------S---------------------S---------------
---------------------------------------SS--------------------------------------S
------------------------------------------------------------S-------------------
--------SSS-------------------------------S-------------------------------------
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---------S----------------------------------------------------------------------
-----S---------------------------------------------------S----------------------
-------------------------S------------------------------------------------------
--SSSSSSS----------------------------------------------------------------------S
-------------------SSS-----------------S--------------SS-------SSSSSSSSSS-------
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---------S----------------------------------------------------------S--S--------
------------------------------S------------S--------------------------S---------
------------------------S----SSSSS-SSS-SSS-------------S------------------------
---------------------------------------------S-S-S------------------------------
S-S---------------------------------------------------------S-------------------
----------------S-------------------S-----------------S----------------S--------
-------S--S------------------------S---------------------SSSSSS-----------------
------S------S------------------------------------------------------------------
----------------------S-----------------------------------------------------S---
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------------------------S-------------------------------------------------------
------------------------------------------------------------------------S-------
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----------------S-------------------------------------------S---------S---------
----------------------------------S-----------------S--------SSSS-S-------------
-------------------S--------------------------------------------------S---S-----
--------------------S---S-----SSSS-------------------------------S--------------
---------------------------------------------------------S--S-------------------
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---S--------------------------------S------------------S-----S------------------
-------------S-S------------------S-----S--------S---------------------------SS-
-----------------------------------------------------S----------S----------S----
------------------------------------------------S-------------------------------
----------------S---------------------------------------------------------------
------------------------------------------S------------------
>forward_83
---------------------------------------------------------------TGGCGCTAAAGAAGACC
CAG-----------------------------------------------------------------------------
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>reverse_1730
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-------------------------------------------------TGGAACACGACGTCTTTGCT-----------
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>forward_1637
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-----------------GTCGTCTGGCTCCTTTCCTC-------------------------------------------
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>reverse_2997
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------------------------------------AAGGGCCTCTTGCATCAAGT------------------------
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