>input_sequence_65298
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--------------------------------------------ATGGTGATGCTTTATTTTAGCTCCCCAAATTCAATA
GATTTGGTTGCGGTGAATAAGTTTTTGCAAAATGCCGTTTTAAATTATTAAGCTGTTGGTAATTTGCAAGTATCAATTCC
TTTATTCGCTGTTGATCTTACATTACCTTACCCTCTACAGCTCTACTCATTTGATTGCAAAATGGTTTACTT---GCCTC
TTTTCTTTCAAATGTGTAGAGATGTCTCGGAGTAGCTGTTCAGTCAGGCCACTGTGTCCATGTGCCTGGTCATCCGCTGA
CACTCTGCCGCGCACTTCGGTACCACAACTTCCACTGGATGCCCAAGTACACCATCTACCTTCATGATCGTCAATTTGGC
ATGGAGGACTATGTGGCCGAGGTGCTGATCCATGCAAGAGAAGCGGACAACGACAACGGCCCCTACTGTTTCCTGGGTCA
CGGCACAAACAAGGAGATGGCCATCCAACAAGCTGCTCATGTTGCCATGGCACGTCTTCGCCATGACCTTCCTGAAATGG
CAGAAGGGCCATTAAAGTTTATGCCGGCCCTTTCTTCCAGTGGCGAGGTTTTCTACCCCAACAACTTCAGCCCGAAGGAC
AGTCCCTCTACCGTGGCCATGGTCCAGGCGATGCACTCTAAGGATCGGGAATGTCATGCATACCTGTACGAGTTATGCGA
GGCTCGTCGCGCCCTCAAAGCTGTCAAGACCTTGGCGTCTCTGTATGGCCTTCACTCCCCGGACGTGGGGCATGAGGACC
TCCTCAATGGTGCTGGAGTTGCCTCAACTTCGAGATTTCGCATTCCTTCCATTGACAGAGAAGTGCCAGATGTCGCGCGC
CTAGCGGGCCAGCATCGGGGTGTCCCTGTTCAACCATGCAACCAGGGATGTCCTAGATCTCCAGATCACTGGGGGCCATC
TCATGGCTACTAG-------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------
>chr2D_1_TraesCS2D01G299600
GCGCCGTCCGTCACTTGCGGTTCCGGTAAAGCTGATGGCTCCAACTCACACCTTCGCGTGCCCCTATCCTTTTTTTTTCT
CTCTTTTCTTATCTCGCATGTGGATTCAGTTTGGATTCTGGATCTGGACAGGATCGAGGAAACAACGCCCGTCCTCTGCT
GACAGTCCGGTAGCCCGCTGGCGACGCTCCGCCATTCTTCTGAAATGGTGAGCCCCTGTTCCATCTGATTCTTTCAGTTT
GATCTTTCGTCGGGCCTAGCTCCATCCTCGCCGGAGCCGTGACACCCGCTGCCGCTGGAACTCGTCGCGGGCGCTGCTGC
GGCTATCGCTCTGCTCAGCGCCATCCCTGCACAACGCGAGCGTGGGACCA-AAGTACTGTGAGCAGAGGCCGAGCAGTGA
TCACTT-CCTGAGTCTCTGACCAGGTCGTCAGTCGTCACGCAATCCAGAATAGCATTGGCGACGAGCTAGTAAACCTAGT
TTAGTCTGAAAATAAACTAGTGTAGCAATTAGCATACTACTCCTACCTGCTAGTGGTATGAGTTTATTCCTACTTAAGCT
TTTCTCTGTAGCTGCCCGTAATTAAGTCGGTAAATTATTTAGTTTATTAACTGTATCACTTTTTTTTA-GAACTGAGGCA
CTTGCCCGGCCTTTGAATGAGGCTCTTAC-AAAGTTCAGTATTGTCTAAACTAGTACTCCCTCCGGAAAGACATATAAGA
GCGTTTAGATCACTACTTTAGTGATTTATAAACGCTCTTATATTTCTTTACAGAGGGAGTAATTTACATCGATCTGCGAG
ATCATAATTCCCCAATCGTAGATGATCTACTTATGGTCCTCATTAGTACATCGGCTAGACCAAAGAGGGATGCCGTTTAC
CGTACTGCGAAGCACCAAACTGAGGGATTCGTCTCGGAGACACCTAGTTCCCTGTTCGTGTCAGTGTTCATAGCATACGA
GATAAGTTCTAGCTCGCCAAGATCATAGTTACCAAAGGATATGTATGGTGATGCTTTATTTTAGCTCCCCAAATTCAATA
GATTTGGTTGCGGTGAATAAGTTTTTGCAAAATGCCGTTTTAAATTATTAAGCTGTTGGTAATTTGCAAGTATCAATTCC
TTTATTCGCTGTTGATCTTACATTACCTTACCCTCTACAGCTCTACTCATTTGATTGCAAAATGGTTTACTT---GCCTC
TTTTCTTTCAAATGTGTAGAGATGTCTCGGAGTAGCTGTTCAGTCAGGCCACTGTGTCCATGTGCCTGGTCATCCGCTGA
CACTCTGCCGCGCACTTCGGTACCACAACTTCCACTGGATGCCCAAGTACACCATCTACCTTCATGATCGTCAATTTGGC
ATGGAGGACTATGTGGCCGAGGTGCTGATCCATGCAAGAGAAGCGGACAACGACAACGGCCCCTACTGTTTCCTGGGTCA
CGGCACAAACAAGGAGATGGCCATCCAACAAGCTGCTCATGTTGCCATGGCACGTCTTCGCCATGACCTTCCTGAAATGG
CAGAAGGGCCATTAAAGTTTATGCCGGCCCTTTCTTCCAGTGGCGAGGTTTTCTACCCCAACAACTTCAGCCCGAAGGAC
AGTCCCTCTACCGTGGCCATGGTCCAGGCGATGCACTCTAAGGATCGGGAATGTCATGCATACCTGTACGAGTTATGCGA
GGCTCGTCGCGCCCTCAAAGCTGTCAAGACCTTGGCGTCTCTGTATGGCCTTCACTCCCCGGACGTGGGGCATGAGGACC
TCCTCAATGGTGCTGGAGTTGCCTCAACTTCGAGATTTCGCATTCCTTCCATTGACAGAGAAGTGCCAGATGTCGCGCGC
CTAGCGGGCCAGCATCGGGGTGTCCCTGTTCAACCATGCAACCAGGGATGTCCTAGATCTCCAGATCACTGGGGGCCATC
TCATGGCTACTAGCAGAGTATGCTCTACTAAGGAGTAGGAGTAGTAGATGTGGACTCGGAGATATATCTTAGCTTGTGAG
CTGCGAACCTATATGAGTATGAAGTAATCCGGGGTACTGTAGTGAGTTTGCTTAAGTAGATAGGGCTGGTGCAAGGGGGT
TTTCGTCCCATAGTCTGGCTTCCAGAATGCGGCTGGACAGTGGGTTTCCCCCTAGTTC----------------------
----------------------------------------------------GGAAAAATGGGGTAACCCGTTCGAAAAA
TAAAATCTGGGGTACGAGAATCTGTATAAATATGATGT-AATAGGCTGGTGATCTAGAGTGTGATCTGAACCTATGTGAA
TCTCTATTTTTAGAGTGGAGTTGATGTTTGTACGTCATCAATTTTGATATCGTCCCCCTCCTCACCCCCCTGGTTTGGAA
TAACCTAAACTTTCTTTGGAAACCATGTTCTACATTAATTCAATTAATACTTATCAAAAACAAGTCATGCATTAACTCAG
TAAAAATAAATAAAATATATCAAAACCTCAACCGAATCAATACTTTCTTTCTTTGCCTTCCACTACCCAAATCAAATCAA
ACCTTATCAACTAAATCAAAACTAAACTTTTTCTTGCCTTCCTTACCCATACTAAACAAATCATATATTATC-AAATCTA
TAATATAGTTATCTTATCAAAATCTATAACATGGTCGATATAAGGTATATTTGGATGAGCAGTGCTAGGCACACGACGGA
TTTGTGCACGATTCACACACGACAAGTACCTAGACCATTGGATTGCCTCATTTCTTTGATCTGTGTGGCTTCTAATCACG
TCGTGCACAAATCGTCCATCCACAGATCGTGTGTGCTGCAGTTTTGTATTTCGACAGGTCTGATATTGAACCAGTAGAAT
ATGCATGTTCCATTGCAACGCATAGCCAATTAGCTAGCTTTATTACTATTGAAGGGGAGTTCGTTCCATCGCCTTCACTT
CCCATCAAG-TTTTTTTCTCCCATGCTGTCCTCCCCTTTGGTTCTTTGGT
>chr2A_27
--------------------------TAAAGCTCATGGCTCCAACTCACACCTTCGCGTGCCCCTGTCTCTTTTGTTTTT
CTCTTTTCTTATCTCGCATGTGGATTCAGTTTGGATTCTGGATCTGGACAGGATCGAGGAAACAACGCCCGTCCTCTGCT
GACAGTCCGCTAGCCCGCTGGCGCCGCACCGCCATTCTTCTGAAATGGTGAGCCCATGTTCCATCTGATTCTTTCAGTTT
GATCTTTCGTCGGGCCTTGCTCCATCCTCGCCGGAGCCGTGACACCCGCTGCCGCTGGAACTCGTCGCCGGCGCTGCTGC
GGCTATCGCTCTGCTCAGCGCCATGCATGCACGACGCGAGCGCGGGACCA-AAGTACTGTGAGTAGAGGCCGAGCAGTGA
TCACTT-CCTGAGTCTCTGACCAGGTCGTCAGTCGTCACGCAATCCAGAATAGCATTGGCGACGAGCTAGTAAACCTAAT
TTAGTCTGAAAATAAACTACTGTAGCAATTAGCATACTACTCCTACCTGCTAGGGGTATGAGTTTATTCCTCCTTAAGCT
TTTCTCTGTAGCTTCTCGTAATTAAGTCGGTAAATTATTTAGTTTATTAACTGTATCGCTTTTTTTTAGGAACTGAGGCA
CTTGCCCGGCCTTTGAATGAGGCTCTTATAAAAGTTCAGTATTGTCTAAACTAGTACTCCCTCCGGAAAGATATATAAGA
ACGTTTGGATCACTACTTTAGTGATTTATAAACGTTCTTATATTTTTTTACAGAGGAAGTAATTTACATTGATCTGCGAG
ATCATAATTCCCCAATCATAGATGATCTACTTATGGTCCTCATTAATACATCGGCTAGACCAAAGAGGGATGTCGTTTAC
CGAACTGCGAAGCACCAAACTGAGGGATTCGTCTCGGAGACACCTAGTTCCCTGTTCGTGTCAGTGTTCATAGCATACGA
GATAAGTTCTAGCTCGCCAAGATAATAGTTACCAAAGGATATGTATGGTGATGCTTTATTTTAGCTCCCCAAATTCAATA
GATTTGGTTGCGGTGAATAAGTTTTTGCAAAATGCCGTTTTAAATTATTAAGCTGTTGGTAATTTGCAAGTATCAATTCC
TTTATTCGCTCTTGATCTTACATTACCTTACCCTCTACAGCTCTACTCATTTGATTGCAAAATGGTTTACTTCTTGCCTC
TTTTCTTCCAAATGTGTAGAGATGTCTCGGAGTAGCTGTTCAGTCAGGCCACTGTGTCGATGTGCCTGGTCATCCGCAGA
CACTCTGCGGCGCACTTCGGTGCCACAACTTCCACTGGATGCCCAAGTACACCATCTACCTTCATGATCGTCAATTTGGC
ATGGAGGACTATGTGGCCGAGGTGCTGATCCGTGCAAGAGAAGCGGACAACGACAACGGCCCCTACTGTTTCCTGGGTCA
CGGCACAAACAAGGAGCTGGCCATCCAACAAGCTGCTCATGTTGCCATGGCACGTCTTCGCCATGACCTTCCTGAAATGG
CAGAAGGGCCATTAAAGTTTATGCCGGCCCTTTCTTCCAGTGGCGAGGTTTTCTACCCCAACAACTTCAGCCCGAAGGAC
AGTCCCTCTACCATGGCCATGGTCCAGGCGATGCACTCTAAGGATCGGGAATATCATGCATACCTGTACGAGTTATGCGA
GGCTCGTCGCGCCATCAAAGCTGTCAAGACCTTGGCGTCTCTGTATGGCCTTCACTCCCCGGACGTGGGGCATGAGGACC
TCCTCAATGGTGCTGGAGTTGCCTCAACTTCCAGATTTCGCATTCCTTCCATTGACAGAGAAGTGCCAGATGTCGCGCGC
CTAGCTGGCCAGCATCGGGGTGTCCCTGTTCAACAATGCCACCATGGATGCCATACAATTCCAGATCACTGGGGGCCATC
CCATGGCTACTAGCGGAGTATGCTCTACTAAGTAGTACTC---GTAGATGCGGACTCACAGATATATCTTAGCTTGTGAG
CTGCGAACCTATATGAGTATGAAGTAATCCGGGGTACTGTAGTGAGTTTGCTTAAGTAGATAGGGCTGGTGCTAGTGGGT
TTTCGTCCCGTAGTCTGGCTTCCAGAATGCGGCTGGACAGTGGGTTTCCCCCTAGTGCTTCGAACTCGTTTATCATTTTT
-CACTTTTTATTA-TACTTTTTCTACTGGACATATCTTGTCTCTGTTGTAATGGAAAAATGGGGTAACCCATTCGAAAAA
TAAAGTCTGGGGTATGAGAATCTGTATAAATATGATATGAATAGGCTG------------GTGATCTGAACCTATGTGAA
TCTCTATTTTTAGAGTGGAGTTGATGTTTGTAGGTCATCAATTTTGATATCGTCCCCCTCCTCACCCCGCTGGTTTGGAA
TAATCTAAACTTTCTTTGGAAACCATGTTCTACATTAACTCAATTAATACTTATCAAAAACATGTCATGCATTAACTCAG
TATATATAAATAAAATCTATAAAAACATCAACCGAATCAACACTTTCTTTCTTTGCCTTCCACTACCCAAATCAAATCAA
ATCTTATCAACTAAATCAAAACTAAACTTT-TCTTGCCTTCCTTACCCATACTAAACAAATCATATATTATCAAAATCTA
TAATATAGTTATCTTATCAAAATCTATAACATGGTTGATATAAGGTATATTTGGATGAGCAGTGCTAGGCACACGACAGA
TTTGTGCACGATTCACACACGACAAGTACCTATACCATTGGATTGCCTCATTTCTTTGATCTGTGTGGCTTTTAATCACG
TCGTGCACAAATCGTCCATCCACAGATCGTGTGTGCTGCAGTTTCGTATT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
>chr2B_80
-------------------------------------------------------------------------------T
CTCTTTTCTTATCTCGCATGTGGATTCAGTTTGGATTCTGGATCTGGACAGGATCGACGAAAGAACGCCCGTCCTCTGCT
GACAGTCCGGTAGCCCGCTGGCGCCGCTCCGCCATTCTTCTGAAATGGTGAGCCCATGTTCCATCTGATTCTTTCAGTTT
GATCTTTCGTCGGGCCTAGCTCCATCCTCGCCGGAGCCGTGACACCCGCTGCCGCTGGAACTCGTCGCCGGCGCTGCTCC
GGCTATCGCTCTGCTCAGCGCCATCCCTGCACGACGCGACCGCGGAGGGCGAAGTACTGTGAGCAGAGGCCGAGCAATGA
TCACTTCCCTGAGTCTCTGACCAGGTCGTCAGTCGTCACGCAATCCAGAATAGCATTGGCGACGAGCTAGTAAACCTAAT
TTAGTCTGAAAATAAACTACTGTAGCAATTAGCATACTACTCCTATCTGCTAGTGGTATGAGTTTATTCCTACTTAAGCT
TTTCTCTGTAGCTGCCCGTAATTAAGTCGGTAAATTATTTACTTTATTAACTGTATCACTTTTTTTTA-GAACTGAGGCA
CTTGCCCGGCCTTTGAATGAGGCTCTTAC-AAAGTTCAGTATTGTCTAAACTAGTACTCCCTCCGGAAAGACATATAAGA
GCGTTTAGATCACTACTTTAGTGTTTTATAAACGCTCTTATATTTCTTTACAGAGGGAGTACTTTACATCGATCTGCGAG
ATCATAATTCCCCAATCGTAGATGATCTACTTATGGTCCTCATTAGTACATCGGCTAGACCAAAGAGGGATGCCGTTTAC
CGTACTGCGAAGCACCAAACTGGGGGATTCGTCTCGGAGACACCTAGTTCCCTGTTCGTGTCAGTGTTCATAGCATACGA
GATAAGTTCTAGCTGGCCAAGATCATAGTTACCAAAGGATATGTATGGTGATGCTTTATTTTAGCTCCCCAAATTCAATA
GATTTGGTTGCGGTGAATAAGATTTTGCAAAATGCCGTTTTAAATTATTAAGCTTTTGGTAATTTGCAAGTATCAATTCC
TTTATTCGCTGTTGATCTTACATTACCTTACCCTCTACAGCTCTACTCATTTGATTGCAAAATGGTTTACTTCATGCCTC
TTTTCTTTCAAATGTGTAGAGATGTCTCGGAGTAGCTGTTCAGTCAGGCCACTGTGTCGATGTGCCTGGTCATCCGCTGA
CACTCTGCCGCGCACTTCAGTACCACAACTTCCACTGGATGCCCAAGTACACCATCTACCTTCATGATCGTCAATTTGGC
ATGGAGGACTATGTGGCCGAGGTGCTGATCCATGCAAGAGAAGCGGACAACGACAACGGCCCCTACTGTTTCCTGGGTCA
CGGCACAAACAAGGAGATGGCCATCCAACAAGCTGCTCATGTTGCCATGGCACGTCTTCGCCATGACCTTCCTGAAATGG
CAGAAGGGCCATTAAAGTTTATGCCGGCCCTTTCTTCCAGTGGCGAGGTTTTCTACCCCAACAACTTCAGCCCGAAGGAC
AGTTCCTCTACCGTGGCCATGGTCCAGGCGATGCACTCTAAGGATCGGGAATATCATGCATACCTGTACGAGTTATGTGA
GGCTCGTCGCGCCCTCAAAGCTGTCAAGACCTTGGCGTCTCTGTATGGCCTTCACTCCCCGGACGTGGGGCATGAGGACC
TCCTCGATGGTGCTGGAGTTGCCTCAACTTCGAGATTTCGCATTCCTTCCATTGACAGAGAAGTGCCAGATGTCTCGAGC
CTAGCGGGCCAGCATCGGGGTGTCCCTGTTCAACCATGCAACCAGGGATATCCTAGATCTCCAGATCACTGGGGGCCATC
TCATGGCTACTAGCAGAGTATGCTCTACTAAGGAGTAGGAGTAGTAGATGTGGACTCACAGATATATCTTAGCTTGTGAG
CTGCGAACCTATATGAGTATGAAGTAATCCGGGGTACTGTAGTGAGTTTGCTTAAGTAGATAGGGCTGGTGCAAGGGGGT
TTTCGTCCCATAGTCTGGCTTCCAGAATGCGGCTGGACAGTGGA--TCCCCCTAGTGCTTCGAACTCGTTTATCATTTTT
TCACTTTTTATTAGTACTTTTTCTACTGGACATATCTTGTCTCTGTTGTAATGGAAAAATGGACTAACCCGTTCGAAAAA
TAAAATCTGGGGTATGAGAATCTGTATAAATATGATGT-AATAGGCTGGTGATCTAGGGTGTGATCTGAACCTATGTGAA
TCTCTATTTTTCGAGTGGAGTTGATGTTTGTACGTCATCAATTTTGATATCGTCCCCCTCCTCACCCCGCTGGTTTGGAA
TAATCCAAACTTTCTTTGGAAAC---------------------------------------------------------
--------------------------------------------------------------------------------
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>chr2B_2337
--------------------------------------------------------------------------------
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------------------GAAACCATGTTCTATAGTAACTCAATTCATACTTATCAAATACGTGTCATGCATTAACTCAG
TAAAAATAAATAAAATCGATCAAAACCTCAACCGAATCTATACTTTCTTTCTTTGCCTTACACTACCCAAATAAAATAAA
ATCTTATCAACTAAATCAAAACTAAACTTA-TCTTTCCTTCCTTACCCATACTAAACAAATCATATATTATCAAAATCTA
TAATATAGTTATCTTATCAAAATCTATAACATGGTCGATATAAGGTATATTTGGATGATCGGTGCTAGGCACACGACAGA
TTTGTGCACGATTCACACAGGACAAGTACCTAGACCATTGTATTGCCTCATATCTTTGATCTGTGTGGAATCTAATCACG
TCGTGCAAAATT-GTCTATCCACAGATCGTGTGTGCTGCAGTTTCGTATTTCGACAGGTCTGATATTGAACTAGTAGAAT
ATGCATGCTCCATTGCAACGCACAACCAATTAGCTAGCTTTATTACTATTGACGAAGAGTTCATTCCATCGCCTTCACTT
CCCATCAGTTTTTGTTTCTCCCATGTTGTCCTCCCCTTTGGTTTTTTGG-
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSS-------S-------------------------------S--SS----S---S-
--------------------------------------------------------------------------------
-----------------------S-------------------------------S------------------------
--------------------------------------------------------------------S-----------
--------------------------------S---------S-------------------------------------
------------------------------------------------------------------------------S-
-------------------S------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------S---------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------S---------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------SS---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
--------------------------------------------------------------------------------
--------------S------------------------------------------S----------------------
--------------------------------------------------------------------S-----------
---S----------------------------------S-----------------------S-----------------
----------------S---------------------------------------------------------------
-S----------------------------S-------------------------------------------------
-----------------------------------------------------------------------------S--
--------------------------------------------------------------------------------
--------------------------------------------S--------------------------S--------
-------S--------------S-S---------------------------S-SS------S-----------------
-------SS----S-----------S-----------------S-----S
>forward_216
--------------------------------------------------------------------------------
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-----------------------------------TCTTCTGAAATGGTGAGCCCC------------------------
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>reverse_1259
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----------------------------------------------------------CATGTGCCTGGTCATCCGC---
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>forward_479
--------------------------------------------------------------------------------
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----------------------------------------------------------GCGACGAGCTAGTAAACCTAG-
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>reverse_1653
--------------------------------------------------------------------------------
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----------------------------------------------------GTCATGCATACCTGTACGAGT-------
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--------------------------------------------------
>forward_1259
--------------------------------------------------------------------------------
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----------------------------------------CAGTCAGGCCACTGTGTCC---------------------
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>reverse_2936
--------------------------------------------------------------------------------
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-------------------------------------------------------GGAGTTCGTTCCATCGCCTT-----
--------------------------------------------------
