>input_sequence_65278
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--ATGGAAGCCTCGCGGTTCGGCTTCGGCCGCGACATGGCGGCGGCGTTCAAGTTCGACCCCACCGACGCCGACATCGTC
GCCTCCTACCTCCTCCCCCGCGCGGTCGGCCTCGACGAGCCCCACGGCCACGGGCGCGCCGTCATCGACGACGACCCCAT
GAGCCTCCCGCCGTGGGACCTCATGGAGAAGCACAACCACGGGACAAGCCACCAGGCCTTCTTCTTCGGGCCTCCCAGGA
ACGGGGGCCCCGTCAAGCGCGTCGTGCCCGGCAAGGGCGGCGGCACGTGGCAAGGGCAGAATGGCAGCGTCGGGACCGTC
ACCCTGTTCTGCGATG------GCGATGGCGATGGCGCCCGCGCGGGAGAGGTGGACATCAGCTACAGGAGGTACGACCT
CACCTACAAGCGCGCGGGCGACAAGGCCCCCAGCGGCTGGGTCATGAGCGAGTACCAGATCACCTCGCCGCCGCTCTTGA
GCACGGTGCTCACCCGCATCGGATTGACCGTCGCCGCCAGGGAGCAGAGGAAGCGACAGCCGGCCGACCCGGAGGTGCGT
AAGGATCGGCGCGTCCTGCGTGCGTGCGTTGGGGGAAC------TTGGGGGCGAATTCGTCACTGATTTAGTGATTTGGG
GATCCGTTAACTGAATGTGTTAT---------------TTCTTCTTCAGCCGTTTGCTCAGCACGGCCCTGACAAGGTGC
TGGCCGTCGCAGCCGCTGCCGCCGCCGCCGCCGAACATCAACGGGTTTCACCACCGCCAGTGCAGTCGGGCCCTGACGCG
CAAGCCGACGATGGTGCTCTCTACCATGGCGGTACTAGCGTCACCGGCGTGGGGGAGAACGGTGGGCACTACACTGTTCC
GCTTCTGCTCAACGGCCAAGAGTACTACAAGGACAAGAGCCGCGTCAAACGCAAACGGCCGCGATATGGGGCATGA----
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>chr5A_1_TraesCS5A01G099000
TGAGCATCCATCTTCCAACACACAATGAGTGAGCATGTTCAAAATGAGCTACCATAATTGAACCAATTAATGAGCCATCA
AAATGAGCTACCGCAAGTGCACGTACCCCGTCGTTTTCGCATTTGAAGAACACCCATCCGGGGTGCTTCGACGTGCCCGA
AGTGAGCCGCAGCACTTTCCGCGTGCAGTCGTCGCACTCTATGAGCGGCATCGGCAAGCCACAAAGACGATGCGCGAGCG
CCGACCCCGGTGGACGGCCGGACGAATCCATGCACGCAAACCTTCGGTGGCGGCGAGCGGACGAAGCAGTACCTGCATGC
GGCGATGCGCCCTTGCCTGGGCTGCGGGAGAGGCTCCCCGACCACTCCAACACTTGGGGCAGCAACCGGCGGCCGG--AA
AA-GC-------------------------CAAATCCGGCGGCCCGCCGACGCAGGGGG-AAGGG-A--GGGGAGGCCTC
GTGCGCGTGGTGGCCTTCCGGCGTGCTCCTGCCGGCTGCTTTCGCCGGAATCTTGGGCGGCGGCCGG-CGGCGGCGCGA-
AGGGGAGAGGAGAGGTGGTTGATGGAAGAAAGCGCGGGATGAAATGT-CCCCCACCAACCGTTTCCGCTTATATGCAGGG
CACCGCAGCCGCGAGGCAGAA-ACTCGCGTTTTCTCGGATTGGGCTCGGGATTTTGCCGCGCCTCCTAAATTTTTTTACG
AGTCGGGACGTGATGCGGAATCTGATCGGGCTGGTTTTTCCGCCCCGACCCGCATTTTGACGGTTATTTTACGGGTCA-G
GCGGGATGCGGGGTCTGCTAGAGTTGCTCTAATAACCCGAAGAGTTGGAATGGCATGGCAAAGCTCAAATGAGCGACTTC
TTGGCTCCCAAGTAATCTGGG--CTCAAGTAGTAGTCGAGTCGGCGATTCGATCGGCTCATATTAGCTGTGCGCCTTTGC
CAAATCACACCGGCACGGGTT-GGGAACCAAGGAACCGTTCGTTTGCGTTTGCGGAGCGGGGCAGAGCAG--TGCGGAGG
GCATGGAAGCCTCGCGGTTCGGCTTCGGCCGCGACATGGCGGCGGCGTTCAAGTTCGACCCCACCGACGCCGACATCGTC
GCCTCCTACCTCCTCCCCCGCGCGGTCGGCCTCGACGAGCCCCACGGCCACGGGCGCGCCGTCATCGACGACGACCCCAT
GAGCCTCCCGCCGTGGGACCTCATGGAGAAGCACAACCACGGGACAAGCCACCAGGCCTTCTTCTTCGGGCCTCCCAGGA
ACGGGGGCCCCGTCAAGCGCGTCGTGCCCGGCAAGGGCGGCGGCACGTGGCAAGGGCAGAATGGCAGCGTCGGGACCGTC
ACCCTGTTCTGCGATG------GCGATGGCGATGGCGCCCGCGCGGGAGAGGTGGACATCAGCTACAGGAGGTACGACCT
CACCTACAAGCGCGCGGGCGACAAGGCCCCCAGCGGCTGGGTCATGAGCGAGTACCAGATCACCTCGCCGCCGCTCTTGA
GCACGGTGCTCACCCGCATCGGATTGACCGTCGCCGCCAGGGAGCAGAGGAAGCGACAGCCGGCCGACCCGGAGGTGCGT
AAGGATCGGCGCGTCCTGCGTGCGTGCGTTGGGGGAAC------TTGGGGGCGAATTCGTCACTGATTTAGTGATTTGGG
GATCCGTTAACTGAATGTGTTAT---------------TTCTTCTTCAGCCGTTTGCTCAGCACGGCCCTGACAAGGTGC
TGGCCGTCGCAGCCGCTGCCGCCGCCGCCGCCGAACATCAACGGGTTTCACCACCGCCAGTGCAGTCGGGCCCTGACGCG
CAAGCCGACGATGGTGCTCTCTACCATGGCGGTACTAGCGTCACCGGCGTGGGGGAGAACGGTGGGCACTACACTGTTCC
GCTTCTGCTCAACGGCCAAGAGTACTACAAGGACAAGAGCCGCGTCAAACGCAAACGGCCGCGATATGGGGCATGAGCCA
TCCTGATCGAACCTGAATCCAGTCGGGAGACGCCCGCCCGTACATTTGGATCACGGAATAGCATGTATGTCATCCGTTTC
TAAC-TTGTTTCTGTGGATCCTTGGTTCTTGACGTTCCTGGGTTTTTAATCGGGAAGGATACATGGCCTGATTTTGAGAC
ACGATGTCGATCATGTTGGGTCCTGGTTCATGTTGATGGATTGCTTTTTGAGACCGTCCTGGGGTCATGTTGGGTCATGG
GACGTGGTTTGGTGTTCTTCTTTTGGGATTA---ATTAATAGCACACTGGG---GTACACCTGATTAATTAG--------
-----------------ACGGTCTACACAGAGGCTAATGAACATTGTTGGTTTTCTTGATTGGAAGCTGCTGACGCTGTT
GGGACTTGTGATATAGGCACTTGGACGTACCTGATTGTATACCTTGCCCTGAGGATGTAACCAAGCTGGCCAGCCTCATT
AACAAATCTTATGTTG-TGCCTGTGTGATTGTTTGTCATGGACCGATTATCATTTTCCTTGTGCCTCATTCGGTTTGGAG
GAAACCAAAATATAAGAATTAGGAGTGGTATAAGAATTTGATAGTCATCCTAAGAAATTGTCTTGCCTCGTTCCTACGCA
TAAAATAAGTTTGAAGTAGATGTGTATATTCCTCCAAAAATATAGGAAATGAATAGTGTTCCTACAAAATTCCCGTACGC
GTTCCCTACAAACCGAATGCATCTATAGAAAAATTTCCTACGGAATCCTTGTTCCTATGTTTTTCCCATAGAAATCCTCC
AAACCAAATGAGGCCTTAAAATATTCTAGTAACAAGTATCATGAGCAAGATTTTCTAAGAGGCAACATAAATTATTTTAA
GAGTTGATGGTTGTTCATGATGCAGAAGAGAGGTCCGAAGCTACATTGCTTGAGTTTTTGTGTTCTGAAGACAATTTAGT
ACATGGGGAGGAGCGTTCGTAGTCGCGTCCTAAGGATATAGCCATGTTGGCAACCCTTGTTAACAAATC
>chr7B_1
TGAGCATCCATCGTCCTACACAAAA-GATTGAGCAATCTCGAAGTGAGCTACCGTACTTGAACTAAAGAATGATCTATG-
GAACGAGCTACCGCAAGTGCACATATCCCGTCGTTTGCGTATTTGTAGAATACCCATCCGGAGTACTTCGGTGTGCCCGA
AGTGAGCCGCAGCACTTGGCGCGGGCGGTCGTCGCACTGTATGAGCGGCATCGGCAGGCCACAAAGACGCTGCGCGAGCA
CCGAGCCCGGTGGACGGCTGGACGAGTCCATGCCCGCAAACCTTTGGCGGCGGCGGGCGGACGAACCCGCGCCTGCATGC
GGCGATGCGCACTTGCCTGGACTGTGGGAGAGGCTCCCCGACCACTCCATCGCCTGGGGCAGCAACCGGCGGCCGGAAAA
AA-GC-------------------------CAAATCCGGCGGCCCGCCGACGCAGGGGGGAAGGG-A--AGGGAGGCCTC
GTGCGCGTGGAGGCCTTCCGGCATGCTCCTGCCGGCTGCTGTCACCGGAATCTTGGGCAACGGCCGG-CGGCGGCGCGA-
GGGGG-GAGGAGGGGTGGTTGGTGGGAGAAAGCGCGGGATGAAATGTCCTCCCACCAACCGCTTCCACTTATGTGCAAGG
CACTGCAGCCGCGGGGGGTGGGACCCGCTTTTTCCCGGGTTGGCGTCGGGATTTTGCCGCGCCCCACAAAAAATTTTGTG
GGCCGGGGCGGGATGCAGGGTCTGATCGGGCTGCTTTTTCGGCCCCGACCCGCATTTTGGCGGTTATTTTGCGGACCGGG
GCGGGATGCGGGGTCTGCTAGAGTTGCTCTTAT-----------------------------------------------
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>chr1D_1
TGAGCATCCTTCGTCCTACACAAAA-GAATGAGCAAGCTCGAAGTGAGCCACCGCAATTTAGCTAAAGAATGAACTGTG-
AAACGAGCTACCGCAAGTGCACGTTCCCGGTCGTTTTCGCATTTGAAGAACACCCATCCGGGGTGCTTCGGCATGCTCGA
AGTGAGCCGCAGCACTTTCAGCGTGTAGTCGTCGCACTCTATGAGCGGCATCGGCAAGCCACAAAGACGCTGCACGAGCG
CCGAGCCCGGTGGACGGCTGGACGAGTA----------------------CGGCGGGCGGACGAACTCGCACCTGCATGC
GGCGATGCGCCCTTGCCTGGGCTGCGGGAGAGGCTCCCCGACCACTCCATCGCTTGGGGCAGCAACCGGTGGCCG--AAA
AAAGCCAAATCCGGCAATGCCGCAGATCTGCAAATTCGGCGGCCCGCCGACACAGGGGGGAGGGGGGAGGGGGAGGCCTC
GTGCGCGTGGCGGCCTTCCGGCGTGCTCCTGCCGGCTGCGGTCGCCGGAATCTTGGGCGGCGGCCGG-CGGCGGCGCGAG
AGGGGAGAGGAGAGGTGGTTGGTGGGAGAAAGCGCGGGATGAAATGTCCCCCCACCAACCGTTTCCGCTTATATGCAGGG
CACCGCAGCCGCGAGGGGGAA-ACCCGCGTTTTTCCAGGTTGGGCTCGGGATTTTGCCGCGCCTCCTAAAAATTTTTGCT
GGCCGAGGCGGGATGCGGGGTCTGATCGGGCGGGTTTTTCCGCCCCGACCCGCATTTTGACGGTTATTTTACGGGTCGGG
ACGGGATGCGGGGTCTGCTAGAGTTGCTCTAACAA---------------------------------------------
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>chr6A_1
TGAGCATCCATCGTCCTACACAAAA-GAATGAGCAATCTCGAAGTGAGCTACCGCAATTGAACTAAAGAATGAGCTATG-
AAACGAGCTACCGCAAGTGCACGTACCCCGTCATTTTTGCATTTGTAGAACACCCATCCGGGGTGCTTCGGCGTGCCCGA
AGTGAGCCGCAGCACTTTCCGCGGGCAGTCGTCGCACTCTATGAGCGGCATCGGCAAGCCACAAAGACGTTGCGCGAGTG
CCGAGCCCGGTGGACGGCCGGACGAGTCCTTACCCGCAAACCTTCGGCAGCGGCGGGCAGACGAACCCGTGCCTGCATGC
GGCGATGCGCCCTTGCCTGGGCTGCGGGAGAGGCTCCCCGACCACTTCATCGCCTGGGGCAGCAACCGGCGGCCG--AAA
AA-GC-------------------------CAAATCCGACAGCCCGCCGATGCAGGGG-GAAGGG-A--GGGGAGGCCTC
ATGCGCGTGGCGGCCTTCCGGCGTGCTCCTACCGGCTGCTGTCGCCGGAATCTTGGGCGGCGGCCGG-CGGCGGCACGA-
GGGGGAGAGGAGAGGTGGTTGGTGGGAGAAAGCGCGGGATGAAATGTCT-------------------------------
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---CCGTACCAACCGCTTCCGC----------------------------------------------------------
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>chr3B_1
TGAGCATCCATCTTCCTACACACAT-GAATGAGCATGTTCGAAATGAGGTACCGCAAGCT----------------ATCA
AAATAAGCTACCGCAAGTGCACGTACCCCGTCGTTTTTGCATTTGAAGAACACCCATCCGGGGTGCTTCGGCGTGCCCGA
AGTTAGCCGCATCACTGTCTGCGTGCAGTCGTCGCACTGTATGAGCGGCATCGGCGAGCCACAGAGACGCTGCGCGAGCG
CCGAGCCCGATGGATGGTCGGATGAATCCATGCGCGCAAACCGTCGGCGGCGGCGGGAGGACGAAG-CGTACCTGCATGC
GGCAATGCGCCCTTGCC-GGCCTGCGGGAGATGCTCCCCGACCATTCCATCGCTTGGCGCAGCCATCGGCGGCCG--GAA
AACGC-------------------------CAAATCCGGTGGCCCGCCGACGCAGTGG-GAGGGGGA--GGGGAGGCCTC
GTGCGTGTGGCGGCCTTTCGGCGTGCTCCCGCCGGCTGCTTTCGCCGGAATCTTGGGCGACGGCCCGACGGCTGTGCGAG
AGGGAGAGGGGA--------------------------------------------------------------------
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>chr5B_796
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--------------------------------TAGCCTGAAGAGTTGGAATCGCATTGCAAAGCTTAAACGAGCGACTTC
TTGCCCCCCAAGTAATCTGGGCTCTCAAGTAGTGTTCGAGTCGGCGATTCGATCGGCTCATATTAGCTGTGCCCCTTTGC
CAAATCACACCGGCACGGGCACGGGAACCAAGGGACCATTCGTTTGCGTTTGCGGAGCAGAGCAGTGCGGACTGCGGAGG
GCATGGAAGCCTCGCGGTTCGGCTTCGGCCGCGACATGGCGGCGGCGTTCAAGTTCGACCCCACCGACGCCGACATCGTC
GCCTCCTACCTCCTCCCCCGCGCGGTCGGCCTCGACAAGCCCCACGGCCACGGGCGCGCCGTCATCGACGACGACCCCAT
GAGCCTCCCGCCGTGGGACCTCATGGAGAAGCACAACCACGGGACCAGCGACCAGGCCTTCTTCTTCGGGCCTCCCAGGA
ACGGGGGCCGCGTCAAGCGCGTCGT------CAAGGGCGGCGGCATGTGGCAAGGGCAGAATGGCAGGGTCGGGACCGTC
ACCCTGTTCTGCGATG------GCGCC------------------GGCGAGGTGGACATCAGCTACAGGAGGTACGACCT
CACCTACAAGCGCGCGGGGAACAAGGACCCCAGCGGCTGGGTCATGAGCGAGTACCAGATCACCTCGCCTCCGCTCTTGA
GCACGGTGCTCACCCGCATCGGATTGACCGTCGCCGCCGGGGAGCAGAGGAAGCGACAGCCGGCCGACCAGGAGGTGCGT
AAGGATCGACGCGT--TGCGTGCGTGCGTTGGGGGAAC------TTGGGGCCGAATTCGTCCCTGATTTAGTGATTTGGG
GATCCGTTAACTGAAGGTGTTGGTTCTTCTCCTTCTTCTTCTTCTCCAGGCGTTTGCTCAGCAGGGCCCTGACAAGGTGC
TGGCCGTCGCAGCCGCTGCCGCCG---CCGCCGAACATCAACGGGTGTCACCACCGCCATTGAAGTCAGGCCCTGACGCG
CAAGCTGACGATGGTGCTCTCTACCATGACGATACTAGCGTCACCGGCGTGGAGGAGAACGGTGGGCACTACACTGTTCC
GCTTCTGCTCAACGGCCAAGAGTACTACAAGGACAAGAGCCGCGTCAAACGCAAACGGCGGCGATATGGGGCATGAGCCA
TCCTGATCGAACCTGAATCCAATCGGGAGAAGCCCGCCCGTACATTTGGATCACGGAATAGCATGTATGTCATCCGTTTC
TAACATTGTTTTTGTGGATCCTTGGTTCTTGACATTCCTGGGTTTTTAATCGGGAAGGATATATGGCCTGATTTTCAGAC
ACGATATCGATCATGTTGGGTCCTGGGTCATGTCGATGGATTGCTTTTTGAGACCGTCCC-GGGTCATGTTGGGTCGTGG
GACGTGGTTTGGTGTTCTTCTCTTTTTTGGGATTATTAATAGCACATTAGG---TTACACCTGA----------------
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>chr5D_823
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-----------------------------------------------------------AAAGCTTAAATGAGTGACTTC
TTGGCTCCCAAGTAATCTGGGCTCTCAAGTAGTGGTCGAGTCGGCGATTCGATCGGCTCATATTAGCTGTGCGCCTTTGC
CAAATCACACCGGCACGGGCACGGGAACCAAGGAACCATT------CGTTTGCGGAGCAGAGCAGAGCGG--TGCGGAGG
GCATGGAAGCCTCGCGGTTCGGCTTCGGCCGCGACATGGCGGCGGCGTTCAAGTTCGACCCCACCGACGCCGACATCGTC
GCCTCCTACCTCCTCCCCCGCGCGGTCGGCCTCGACGAGCCCCACGGCCGCGAGCACGCCGTGATCGACGACGACCCCAT
GAGCATCCCGCCGTGGGACCTCATGGAGAAGCACAACCACGGGACCAGCGACCAGGCCTTCTTCTTCGGGCCTCCCAGGA
ACGGGGGCCGCGTCACGCGCGTCGTGCCCGGCAAGGGCGGCGGCACGTGGCAAGGCCAGAATGGCAGGGTCGGGACCGTC
ACCCTGTTCTGCGATGGCGCCCGCGCC------------------GGCGAGGTGGACATTAGCTACAGGAGGTACGACCT
CACCTACAAGCGCGCGGGCGACAAGGCCCCCAGCGGCTGGGTCATGAGCGAGTACCAGATCACCTCGCCGCCGCTCTTGA
GCACGGTGCTCACCCGCATCGGATTGATCGTCGCCGCCAGGGAGCAGAGGAAGCGACAGCCGGCCGACCCGGAGGTGAGT
AAGGATCGACGCGT--TGCGTGCGTGCGTGCGTTGGGCGAACTTTTGGGGGCGAATTCGTCCCTGATTTAGTGATTTGGG
GATCCGTTAACTGAAGGTGTTGG---------TTCTTCTTCTTCTCCAGGCGTTTGCTCAGCAGGGCCCTCACAAGGTGC
TGGCCGTCGCAGCCGCAGCCACCG---CTGCCGAACATCAACGGGTTTCACCAGCGCCAGTGCAGCCAGGCCCTGACCCG
CAAGCCGACGATGGTGCTCTCTACCATGGCGATACTAGCGTCACCGGCGTGGGGGAGAACGGCGGGCACTACACGGTTCC
GCTTCTGCTCAACGGCCAAGAGTACTACAAGGACAAGAGCCGCGTCAAACGCAAACGGCGGCGATATGGGGCATGACCCA
TCCTGATCGAACCTGAATCCAATCGGGAGACGCCCGCCCGTACATTTGGATCACGGAATAGCATGTATGTCATCCGTTTC
TAACATTGTTTCTGTGGATCCTTGGTTCTCGACATTCCTGGTTTATTAATCGGGAAGGATATATGGCCTGAATTTGAGAC
ACGATATCGATCATGTTGGGTCCTGGGTCATGTTGATGGATTGCTTTTTGAGACCGTC--------ATGTTGGGTTATGG
GACGTGGTTTGGCGTTCTTCTTTTGGGATTA------AATAGCACACTAGCCTATTACACCTGATTAATTAGCTACCTCT
GCATATGTGCGTAGTCGACGGTCTACACAGAGGCTAATGAACATTGTTGGTTTTCTTGATTGGAAGCCGCTGACGCTGTT
GGGACTTGTGATATAGGCACTTGGACGTACCTGATTGTATATCCTGCCCTGAGGGTGCGAA------------CCTCATT
AACAAATCTCATGTTGGTGCTTGTGCGATTGGTTGTC-------------------------------------------
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>SNPs
----------------S--------S--S-----------S------------S---------S--SS-------S----
----------------------------------------------------------------------S---------
---------------------------------------------------------------------S----------
----S----------------------------S-------------S-------S-----------S------------
-------------------------------------------------S-S----------------------------
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----------S---------------------------------------------------------------------
---------------------S---S------------------------------------------------------
----------------SS------S---------S---S-------------------------------SS-----S--
S-S----S--S-------SS---------------------------------------------------------S--
-------------------------------------S-------------S----S--------S--------------
---------------------------------S----------------------------------------------
-------------------SS----------------S--------------------S-S-------S-----------
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---------------------------------------------S---S------------------------------
---------S---------------------------------------------------------S------------
-------------------------SSSSSSSSSSSSSSSSSSSS--S--------------------------------
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--------S-----SS---------------------------------------------S------------------
---------------S-----SS----------------------S---S-------------S----------------
------------------------SSS----------------------------------------S------------
-------------------------------S------------------------------------------------
-----------------------------------------------------------S--------------------
---------------------S----------------------------------------------------------
---------------------------------S---------------------------S------------------
-----S--------------------S--------------------------------SS-------------------
------------------------------------------------S-----S-------------------------
-------------------------------------------------------------------S------------
-----------------------------------------S-S----------S--SS-SSSSSSSSSSSSS-------
---------S----------S----S-----S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_866
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----------------------------------------------GGAATGGCATGGCAAAGCTC--------------
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>reverse_2543
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--------------------------------------------------------------GCCTCATTCGGTTTGGAG
GA------------------------------------------------------------------------------
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