>input_sequence_65276
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-------ATGGCCGCGGCGACGGCGTGGGTGCGCTCGCTCAGCTGCAAGTACTCTACGGCCGTCGCCGACGACGCGTACA
GCCCGCTGCTGCCCCCGCCCAAGAAGCACCCGCCGACGCCGACGGCCAAGGGTGCTGCCTCCGTCGCGTTGCTGCCGCCG
GAGAGGGGCCGGGAGAGCCGGAGGTCCAGGTCCATGTCCAGCGAGCGGGACCGGCCT------GCTGCTGCTACTGCTAG
GAAGACGAGGAAGAAGGAGGCG------GACGCCACGTCCGAGCACGCGAGGAAGGAGACGCCCAGGGTGCA------GC
GGCTCGCGGCGTCGCTGGAGCGGCCGGGCTCGGCGCTCCTGGAGATGACGGAGCTGCCGGAGGGCCACCCGTCGCGGCGC
GTGGTGGAGCTCATCTTCGCGTCGGGCTGGGCGCGCG---CCGACGGAGCCGCGGAGGTGGAGACGCTGTTCCGGGTGCA
CGGCACGGCGCGCGCGGCGGCGCGCTTCGAGGCCGCGCGCGCCGCCGCCCGGGCGCGGGGCGAGGCCGCGGGCGACGGGC
GCTGCGCCGCCGACGGCAACGAGGTGATGCGGTTCCAGTGCCGCCCCGCGGCGGAGGCCGGGGGCGGCAGCGAGGTGATC
TGCGCGGCCGTGGCCACGTGCCACAAAGCCGGCGCGGCCAGGGCCGTGCGCACGTTCGCCGGCAGCGGCGCGGCGGACGC
CGGCATAACA---GGAGGCCGCGAGGGCCGCAGGGGCATGCTGGTGTGCCGCGTCATCGCCGGCCGCGTCCGTCGCGCCT
CCGCCGACGAGCGCCCCGGCGAGTACGACTCTGTTGACGCGGGGGACGGCGAGCTGGTGGTGCTGGACCGGCGCGCCGTG
CTCCCCTGCTTCCTCGTGGTGTACAGGGTCAAGCCTCCCCCGGAGCTCTCCACCTCCTCCAGCGGCCGCTCCCGCTGA--
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>chr4D_1_TraesCS4D01G361200
GGTAGGGTAGTCCGAAACAGCTGTGGCATGATAGTCGACATGCGTCTGATTGCCTCGGAGGGATTATCATCGATTTATAC
TATGTCGACTTACTACACGTGGAGGAGCATCTTCGTACTCACCCCTCGAAAATGTTGTGGTTCGTTAACAAGTAGAAAGG
GAGTGCTCTACCTCTCGTCGGTGTTGTCGTAGGTCCGCCTCGTCTCTGATGGCCTTAGGGTCCCAGTTGTCCTCGGTCCT
TGCCGCGGGAGGGTTCGTACTCCGCTTTTTAGGCTTTTTTTAGGTTGATTTAGGGTTGTGTCCTGCTCAGTCTCTATCCC
GGCGACTTTCTGACTGTCTAGTAGAACAAGTTTTGCCCGACTCCAATGTGAGAGGGGCGATAACGGCAGCATGCCTTCGA
CTCGCTTCAGTGCGTGTAGTCGTCGCTAGGTGGCTTGCGAACCTGGATGTAATTTCTTTATTTCTGTTGTTCCTTGTCCC
ATTACAGATTAAGAATAGAGCAAAAAAATGGAAAGAGAGTTGATCCAACGCAACAAATAGAATTGATCCACTACAAAAAA
AGGT---CTATTTAAGCAAAAAAATAT-GCAAATTCATCACCTTGTGATTAGGCCTTTAATTTGCGGATCATGAAAGCAT
ACA------CACACCAGACCCAAAAGGAGGATCGATCTCCAGATGCTAAG---------------------------GAA
AA---AACTGAGAAAGGCTGCGCTACTTTCCACACCATCTACGCCCCTCCCTGCCGTCCGGACCCGCCTGCGTCGGCGGC
CCACGTGTCGGTGGGGCGGGAGAACCATTCTCT-GGTGTAGCCGGTGGTCGCCGGAGTGGTGGCGAATAAATCTGATGGC
CATAATAACGCCCAGAGATGCAGAGCTGAGGTGAGTTGACACCCACCGCCCGCTCCCCGCCAACAACCTCCAGCCAGTCG
CCGCCCCCCG--CCCTCGTGCTCTGCTTTTTATACGGCGCGCCGCCGTGCTGGGGTC----CCGTCTTGCACAGTACCTC
GCCGGCAATGGCCGCGGCGACGGCGTGGGTGCGCTCGCTCAGCTGCAAGTACTCTACGGCCGTCGCCGACGACGCGTACA
GCCCGCTGCTGCCCCCGCCCAAGAAGCACCCGCCGACGCCGACGGCCAAGGGTGCTGCCTCCGTCGCGTTGCTGCCGCCG
GAGAGGGGCCGGGAGAGCCGGAGGTCCAGGTCCATGTCCAGCGAGCGGGACCGGCCT------GCTGCTGCTACTGCTAG
GAAGACGAGGAAGAAGGAGGCG------GACGCCACGTCCGAGCACGCGAGGAAGGAGACGCCCAGGGTGCA------GC
GGCTCGCGGCGTCGCTGGAGCGGCCGGGCTCGGCGCTCCTGGAGATGACGGAGCTGCCGGAGGGCCACCCGTCGCGGCGC
GTGGTGGAGCTCATCTTCGCGTCGGGCTGGGCGCGCG---CCGACGGAGCCGCGGAGGTGGAGACGCTGTTCCGGGTGCA
CGGCACGGCGCGCGCGGCGGCGCGCTTCGAGGCCGCGCGCGCCGCCGCCCGGGCGCGGGGCGAGGCCGCGGGCGACGGGC
GCTGCGCCGCCGACGGCAACGAGGTGATGCGGTTCCAGTGCCGCCCCGCGGCGGAGGCCGGGGGCGGCAGCGAGGTGATC
TGCGCGGCCGTGGCCACGTGCCACAAAGCCGGCGCGGCCAGGGCCGTGCGCACGTTCGCCGGCAGCGGCGCGGCGGACGC
CGGCATAACA---GGAGGCCGCGAGGGCCGCAGGGGCATGCTGGTGTGCCGCGTCATCGCCGGCCGCGTCCGTCGCGCCT
CCGCCGACGAGCGCCCCGGCGAGTACGACTCTGTTGACGCGGGGGACGGCGAGCTGGTGGTGCTGGACCGGCGCGCCGTG
CTCCCCTGCTTCCTCGTGGTGTACAGGGTCAAGCCTCCCCCGGAGCTCTCCACCTCCTCCAGCGGCCGCTCCCGCTGACC
CGACCGACGCCGGCCATGAACGGATCCCGGCGCCGATCAGCACCGCTCCACCCGCTAATCCGCTAACTGCTAGCTAGGCT
TGGATCG--ATCGACCTTCCTCCCCCCATTCCTCCATGACC----GATCGATGCAAGGTGTGCATGTGAGACTGTAAAAA
A-CGGCCATTGTTTCCCA-CCCCCACGATTGTTGACCGAAATTGTACCATACATCAATCAAACAAATGCA----GCTGCT
GCTACTTGAGCTCAGTGCAGCTCGTCTCTTACTTTCAGTGCCGTGC--CCCAACTGCACAC----CCATCCATTGTTTTT
ACCACTATTGACCGAAATC--------AAACCGTACAACAGATGCAGCTCAACCAATCCGT-------------------
CCATTGTTTCCCGTGCACGTACGCACCGCACGGCACAGCACAGCACGAACGACCGCAAGCCGTTCCGTTCCGTTCGGGCG
TCGCCATCAGTCAGTCAAAATCAGCGCCC--------------------ATTCAGCACAGAAATTCAGCAGATTCAGCAC
AGAAATT-------------TGCTGTCGTCGTAGGTACTGTAGTACGGCTA-----------CCAATCAACGAAGGTGAC
GCACGCCGCTTGTCACCGCGCGCTCGTCTTCTTCCTCGGCGC-CTTTCCGCCGGATTTCGGATTTGGCAACACTCGCGGC
CGGCGCCAGAGGAACCGACAACCCAATTCCGTTGCGGCAGGCAAGAGTCCAGACTATCTTGTCACATCGGCTTGTCCGCG
TCTGCTTGGCACCGCGCTTCCTCTTG-------GGATCAATGGCAGCGGCTTGGAGCTGGAATTCAAGGGATGATGTTCT
GAATCAAGGGATGATGAACAGTAAAAAATATATGTACGCAC--T----------GCGATGTCATCAATGTTGGGAGGACC
TGTGGTTGGTTCACTGACAGCACACACACAT-GGGATGGGGCGGGAGCGCCATGTGTTGTGT----AGGACTGCGGCTGC
GATTGCAAGTGTGTGTGTGTGTGTGTTCATATGGCCCTGCGTCTTGGTCTGCGACCAAAAATATCACACCAG
>chr5A_517
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------------------------------------GAGTTGATCCAAGACAACAAATAAAACTGATCCACCACAAAAAA
TAAGGGTCTATTTAACCAAAAAT-TAG-GCCAATTCATCACCTTGTGATGA----TTTAATTTGCGGATCATGAAAGCGC
ATAGTACACCACACCAGACCCAAAAGGAGGATCGATCTCCAGATGCTGGCAAAAGGCTCCACATTTCCTTTTCAGAAGAA
AATAGAACTGAGAAAGGCTGCGTTACACTCCACACCATCTACACCCCTCCCTGCCGTCCGGACCCGCCTGCGTCGGCGGC
CCACGCGTCGGTGTGGTGGAGAGAGCTACTTTTAGGTGTAGGTGGCGGTCGCCGGAGTGGTGGCGACTAAATCTGATGGA
CATAATAACGCCCAGAGATGCAGAGCTGAGGTGAGTTGACACCCACCGCCCGCTCCCCGGCAACAAACTCC----AGTCG
CCGCCCCCTCCTCCCTCGTGCTCTGCTTTTTATACGGCGCGCCGCCGTGCTGGGCTTCCGTCCATCTTGCACAGTACCTC
GCCGGCAATGGCCGCGGCGACGGCGTGGGTGCGCTCCCTCAGCTGCAAGTACTCTACCGCCGTCGCCGACGACGCGTACA
GCCCGCTCCTGCCCCCGCCCAAGAAGCACCCGCCGACGCCGACGGTCAAGGGTGCTGCCTCCGTCGCGTTGCTGCCGCCG
GAGAGGGGCAGGGAGAGTCGGCGGTCTAGGTCCATGTCCAGCGAGCGGGACCGGCCTCCTACCGCTACTGCTACTGCTAG
GAAGATGAAGAAGAAGGA---G------GACGCCACGTCCGAGCTCGCGAGGAAGGAGAAGCCGAGGCT---------GC
CGCTCGCGGCGTCGCTGGAGCGGCCGAGCTCGGCTCTCCTGGAGATGACGGAGCTGCCCGAGGGCCACCCGTCGCGGCGC
GTGGTCGAGCTCATCTTCGCGTCGGGCTGGGCGCGCA---CCGACGGAGCCGCGGAGGTGGAGGTGCTCTTCCGGGTGCA
CAGCACGGCGCGCGCGGTGGCGCGCTTCGAGTGCGCTCGCGCCGCCGCCCGGGCGCGCGGCGAGGCCGCGGGCGACGCGC
GGTGCGCCGCCGACGGCAACGAGATGATGCGGTTCCAGTGCCGCCCCGCCGCGGAGGCCGGGGGCGGCAGCGAGGTGATC
TGCGCGACCGTCGCTACGTGCCACCAGGCCGGCGCGGCCAGGGCCGTGCGCACGTTCGCCGGCAGCGGCGCGGCGGACGC
GGGCGCCGGGGGCGGAAGCCACGAGGGCCGCAGGGGCATGCTGGTGTGCCGCGTCATCGCCGGCCGCGTCCGTCGCGGCT
CCACCGACGAGCACCCCGGCGAGTACGACTCGGCGGACCCGGGGGACGGCGAGCTGGTGGTGCTGGACCGGCGCGCCGTG
CTCCCGTGCTTCCTCGTGGTGTACAGGGTCAAGCCTCCTCCGGAGCTGCACAGCTC------------CTCCAGCTGATC
CGACGCCCTTGCCATGGATTCACTGTCGTGTTAATCACCATCACCG-CCACTCACTAATCCGCTAACTGCTAGCTAGGCT
CGGATCGATATCGATCTTCCTTCCCCCAGTCCTCCATGACCGATAGATCGATGCAATGTGTGCATGTGAGACTGTAAAAA
A-CT-CCATTGTTTTCCACCCCCCACGATTGTTGACCGAAATTGTACCATACATCAAAG-----------AAATGCAGCC
ACTACTTGAGTTCAGATCGTCTCATCATACTTTCG-------GTGC--CCCAACTGCACAC----CCATCCATTGTTTTT
TACCACCGTACA------------------------AACAAATGCAGTTCATCTCTTACTTTCAGAG----CCCAATCCG
CCATTGTTTTCCGTGCA---------CGCACGACACAGCACAGCACGACCGACCGCACACCGTTCCGTTCCGTTGCGCCG
TCGCCATCGGTCCGTCAATCAGCGCCCATTCAGCACTGAAATCCAGCAGATTCAGCACAGAAATTCAGCAGATTCAGCAC
AGGAATTCGG-TGAGAGATCCGCTGTCGTCGTAGGTACTGTACTACGACTATACTACAGTAATCAATCTACGAAGGTGAC
GCACGCCGCTTGTCACCACGCGCTCGTCTTCTTCCTCCGGCTGCTTTCCGCCGGATTTCGGATTTGGCAACACTCGCGGG
CAGGGCCAGAGGAACGGACAACGGAATTCCGTTGCGGCAGGCAAGAGTCCAGGCTATCTTGTTGGGTCGTCTTGTCCGCA
CCCGCTTGTCACTAAGCTTCCTCTTGGCTCTTCGGATCAATGGCTTCAGAATTTCTACTCTACTCTACTGGATGTGTTCT
GGATCAAGC---GATGAACAGTAAAAAAAAGGCTCATATCATATGCACGCAATAGCGATGTCATCAATGTTGGAAGGGCC
TGCGGTTGGCTCACTGGCAGCACGCACACATGGGGATGGGACGGGGGCGCCATGTGTTGTGTGGGTAGGACTGCAGCTGA
AATTGCA-----------------------------------------------------------------
>chr4B_560
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-AAGAGTCTATTTAAGCAAAAAAAAAAGGCAAATTCTTCACCTTGTGATGA----TTTAATTTGCGGATCATGAAAGCAT
ATATGA-------------CCCAAAGGAGGATCGATCTCCACATGCTGGCAAAAGGCTCCACG-TTTCTTTTCAGAAGAA
AA---AACTGAGAACTATTCGG-----------ACCCCCTACGTGGCTTCCTGCCGTCGGGACCCACCTGCGTCGGCGGC
CCACGTGTCGGTGGCACGGGAGAACCATTTTCT-GGTGTAGCCGGTGGTCGCCGGAGTGGGGGCGAATAAATCTGATGGC
CATAATAACGCCCAGAGATGCAGAGCTGAGGTGAGTTGACACCCACCGCCCGCTCCCCGGCAACAAACTCC---------
-------------CCTCGTGCCCTGCTTTTTATACGGCGCGCCGCCGTGCTGGGGC----TCCGTCTTGCACAGTACGTC
GCCGGCAATGGCGGCGGCGACGGCGTGGGTGCGCTCGCTCAGCTGCAAGTACTCCACCGCCGTCGCCGACGACGCGTACA
GCCCGCTGCTGCCCCCGCCCAAGAAGCACCCGCCGGCGCCGACGGTCAAGGGTGCTGCCTCCGTCGCGTTGCGGCCGCCG
GAGAGGGGCCGGGAGAGCCGGAGGTCCAGGTCCATGTCCTGCGAGCGGGACCGGCCT------GCTGCTGCTACTGCTAG
GAAGACCAAGAAGAAGAA---GGAGGCGGACGCCACGTCCGAGCTCGCGAGGAAGGAGAAGCCCAGGCAGCGGCAGGCGC
AGCTCGCGGCGTCGCTGGAGCGGCCTAGCTCGGCGCTCCTGGAGATGACGGAGCTGCCGGAGGGCCACCCGTCGCGGCGC
GTGGTGGAGCTCATCTTCGCGTCGGGGTGGGCGCGCGCGGCCGACGGAGCCGCGGAGGTGGATGCGCTGTTCCGGGTGCA
CGGCACGGCGCGCGCGGCGGCGCGCTTCGAAGCCGCGCGCGCCGCGGCCCGGGCGCGGGGCGAGGCCGCGGGCGAGGCGC
GCTGCGCCGCCGACGGCAACGAGGTGATGCGGTTCCAGTGCCGCCCCGCCGCGGAGGCCGGGGGCGGCAGCGAGGTGATC
TGCGCCGCCGTGGCCACGTGCCACAAAGCCGGCGCGGCCAGGGCCGTGCGCACGTTCTCCGGCAGCGGCGCGGCGGACGC
GGGCGCCGGGGGAGAAGGCCGCGAGGGCCGCAGGGGCATGCTGGTGTGCCGCGTCATCGCCGGCCGCGTCCGTCGCGCCT
CCGCCGACGAGCACCCCGGCGAGTACGACTCGGTGGAGGCGGAGGATGGCGAGCTGGTGGTGCTGGACCGGCGCGCCGTG
CTCCCCTGCTTCCTCGTGGTGTACACGGTCAAGCCTCCCCCGGAGCTCTCCACCTCCTCCAGCGGCCGCTCCCGCTGACC
CGACCGACGCCGGCCATGCACGGATCCCTGCGCCGATCACCACCACTCCACTCGCTAATCCGCTAACTGTTAGCTAGATA
GGCTTGG--ATCGATGTTCCTTCCCCCATT---------------GATCGACGCAAGGTGTGCATGCGAGACTGTAAAAA
AACT-CGATTGTTTTTCA-CCCCCACGATTGTTGACCGAAATTGTACCATACTAGTACTACGTACATCAAAAATGCAGCT
ACTTGTTGAGTTCACTAC--CTCGTCTCTTACTCTGAGAGTTTCAGTGCCCAACTGCACGTCCGTCCATCCATTGTTTTT
ACCACTGCTGCTACGATTGTTGACCGAAACCCGTACAACAAATGCAGTTCATCTCTTGCTTTCAATCAGACCCCAATCCG
CCATTGCTTTCCGCGCA---------CGCACGACACAGCACGAGTGC-ACGACCGCAAGCCGTTCCGTTCCGTTCTGGCG
TCGCCATCAGTCAGTCAATCAGCGCCCACTCAGCACAGCAATTCAGTAGATTCAGCACAGAAATCCAGCAGATTCAGCAC
AGGAATTCGGTTGAGAGATTTGCTGTCGTCGTAGGTAGTGTAGTAG-----TAGTACGACTACCAATCTACGGAGCTGAC
GCACGCCGCTTGTCACCGCGCGCTCGTCTTCTTCCTCGGCGA-----------GATTTCGGATTTGGCAACGCCCGCGGC
CGGTGCCAGAGGAACCGACAACCGAATTCCGTTGCGGCAG------------ACTATCTTGTCACATCGGCTTGTCCGCG
TCTGCTTGGCACAACGCTTCCTCTTG-------GGATCAATGGCAGCAGCCTGGAGCTGGCAATTCAGCTCCACCCTTAT
CCGAACCAA----ATGAACAGTAAAAACAATACTACTCCCATGT----------GTGATGTCGGCAATGTGGCAAGGGCT
TGTGGTTGGTTCACTGACAGCGCACACA----------------------------------------------------
------------------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------SS---------S--S--------S--------
SSSS----------------------S----------------------S-SSSS-------------------------
-S---------------------------------------------SSS------------------------------
----------------------S---SS----------------------------------------------------
-----------------------------S--------------------------------------------------
-----------------------------------------------------------S------S----SSSS-----
--------SS----------------------------------------------S-----------------------
---------------------------------------------------------S----------------------
---------------------------------------------S----------------------------------
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--------S---------SSS-----------------------S--------------S-------S---S--------
S-------------------------S-----------------------------------------------------
---------------------------------------------------------------S----------------
-----------------------------------------------------------------------------S--
-------------------------------------------------S------------------------------
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S---SSSSSS----------------------------------------------------------------------
------------S------------------S--S---------------------------------------------
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------------------S---------S----------S----S------S----------------------------
S-------------S------S----------------------------------------------------------
---SS---------S------------------------------------------SS-SSS-S--SS-------S---
S---------S-----S-SS-------------S-S--S-SS--------------------------------------
------SS--SSSSS-S-S----------S----------S------S---S-SSS-S-S--------------------
---------S-------SSSSSSSSS------S------------------------------------------S----
------------------SSSSS--S-S----------------------------------------------------
--S--------------------------------------------S--------------------S-----------
-----------------------------------------S--------------------------------------
---S-------------------S--------------------------------------------------------
------------SS---------------------------------S--S---------S-S--S--S-SSSS------
-S------SSSS----------------S---SSS-SS-SS--------------------------------S---S--
----------------------------------------S----S----------------------------S----S
S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_53
---------------------------------GTCGACATGCGTCTGATTGC---------------------------
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>reverse_2081
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TGGATCGATCGACCTTCCTC------------------------------------------------------------
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