>input_sequence_65263
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--------------------------------------------------------------AAA-GAACGAAACGGGGG
AAGAAAAACAGTACACGAGCACGATGGCCACGGCACGAGCACTCCGTCTCTTCGCCTCAGGCTCGCCAGCGACCCGGCGC
GGCCTGCCCGGCGCGCACGGCCGCGCGCTGTCCGCATTGTCATCGCAAGCCAGCGGCGCGGGCGATCCCGCGGTCCACTC
CGGCGACCATCCGAGCGACGACTACGCCGAGGGGCCCCCAAAGTTCTCCGGCGCGGAGGAGGCCATCGAGGGCAAAGGCC
AAGACAAGCATCCGCCG---TCGTCCGCGACGACGCGGCCGACGGAGGGGTATGCCAAGGAGCATCGCGTCCCGCCGTTC
ACCCCCTCGGGGAAGCTCGGGTCGCAGGAGCTGGCGGACCCGGCGGCCGGGTCCACGTTCACGCAGAAGCGCCGCTGGTC
CTCCAATTCCAAGCCAGCCGGCAGCGACCCGCTCGGCGACGCGACGCCCGGGGACGAGGAGGCCGCGGCGCGGAAGGTGC
GGGAGGAGGACCGGGAGTACTACCGCACGCACAAGCCGTCGGCGCTGGCCGAGGTGGAGTTCGCGGACACGAGGAAGCCG
GTGACGCGCGCCACGGACGGCGGCGCCGAGGACCGGCTCGAGCAGGACGTGCCGGGGACCATGGTAGAGGACACCGCGGA
CGCGTCGCTGGCCCGCGCCGAGGCCATGTTCCGCGAGGCGGCCTCGCGCGGCAACCCCGCGTGGCCGCACTCCCGCGCGC
TCGCCGCCATGCTGGCCCGGCAAGGCGGGGAGGGCGGCGATGGCGCCGGGGACGCCGCGCCCTGGGGAAGCTAAGCTGAT
TCGTGTCTCGCTCGCGTGACCGT---------------CACTGACACTACTTTTAAGGATAGTAGT-GGAGTGT-AAAAT
AGGTCGCCACGTTCGTGTAAAATAGAAGCCTGATA--------GTGCCACTGAATAAA----------------------
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>chr2A_1_TraesCS2A01G109100
AATCACGACTAAAAATATATGTAAACAATTTTTTCAAAAAAAAGCTTAAAATTCTTACACATGTAGATACAAATGTATAC
CACTTTTTCTCCGGATAGGGATGTATACTACATCGACGACATCTGGAAAACAGAACGTGTGTTGGGTTCATAGGTTGTGG
ATGGCAGGTATGGTTTCCTTGTTCGGCGTCTTCAACAGCAATGGCTTCACTTTTGATGAGCCACCTTGAAGGTCCAGAAA
ACTGCATATCATCGATGGAGCCGCGTCGAGCTCGAGTGAGGAGGTGATTCATCATTCTTTTCTTCGGTGGCTGCTGTGGT
GGTGCCGGAGGCAGGTGACGAACGTTGGTGTCAAGCTCAGAAATGTTCTAGTATTTTTTTCAGTTGTGTCATTTCCGTCC
TTACGTGACTTGTACTTTGTTCTTTATGATATGAATGAAACACGTATTACCATAAAAAAGTTTCATGATAAAATATATTT
TAATATGAGCTATAAAAAGATCATGAATTTCCAGCACATTATAGGCTCGAATCTACTATAGGACTCCATGATTTTTGTTG
TGTATCTCGCATAAAACGCATTTCATTATGGAAATTTACATAAACTGAATATAAAT------------------------
--------------------------------------------------CTCTGTGCATATGTGTAC------------
----TTTTTTCATAATTTTTGAAACTTAAGGGTTTGTTTTCTATTTTGCAAAATTTAGGGCTCCATATA-GCCCAGGAGC
CCAAAATCCTCGCCCCCTCAAAAAGGTAAACTGTGCAAATTCCAAAGGGTCTCACTTTACGGGCCCAACTGACCCAAGGC
CCAAACCGTTCAGTGCATTCTAGACAACCAGGGGAGTTCCTCGGTCGGTCTCTGGTCGACTCGTCTCTTCCACCTCATTC
TCGATCCTCCCAAACTCGCCACGTGTCGAGCCGTCTCCCTCCCACCTCGTCCTCCC-GCTCCGGCAACTCTCTCGACGCT
CCCAG-CGCGAGCATCCTGCTAT-----AAGAATCGCCGCCGCAC----AGGCGCCATGACCAAA-GAACGAAACGGGGG
AAGAAAAACAGTACACGAGCACGATGGCCACGGCACGAGCACTCCGTCTCTTCGCCTCAGGCTCGCCAGCGACCCGGCGC
GGCCTGCCCGGCGCGCACGGCCGCGCGCTGTCCGCATTGTCATCGCAAGCCAGCGGCGCGGGCGATCCCGCGGTCCACTC
CGGCGACCATCCGAGCGACGACTACGCCGAGGGGCCCCCAAAGTTCTCCGGCGCGGAGGAGGCCATCGAGGGCAAAGGCC
AAGACAAGCATCCGCCG---TCGTCCGCGACGACGCGGCCGACGGAGGGGTATGCCAAGGAGCATCGCGTCCCGCCGTTC
ACCCCCTCGGGGAAGCTCGGGTCGCAGGAGCTGGCGGACCCGGCGGCCGGGTCCACGTTCACGCAGAAGCGCCGCTGGTC
CTCCAATTCCAAGCCAGCCGGCAGCGACCCGCTCGGCGACGCGACGCCCGGGGACGAGGAGGCCGCGGCGCGGAAGGTGC
GGGAGGAGGACCGGGAGTACTACCGCACGCACAAGCCGTCGGCGCTGGCCGAGGTGGAGTTCGCGGACACGAGGAAGCCG
GTGACGCGCGCCACGGACGGCGGCGCCGAGGACCGGCTCGAGCAGGACGTGCCGGGGACCATGGTAGAGGACACCGCGGA
CGCGTCGCTGGCCCGCGCCGAGGCCATGTTCCGCGAGGCGGCCTCGCGCGGCAACCCCGCGTGGCCGCACTCCCGCGCGC
TCGCCGCCATGCTGGCCCGGCAAGGCGGGGAGGGCGGCGATGGCGCCGGGGACGCCGCGCCCTGGGGAAGCTAAGCTGAT
TCGTGTCTCGCTCGCGTGACCGT---------------CACTGACACTACTTTTAAGGATAGTAGT-GGAGTGT-AAAAT
AGGTCGCCACGTTCGTGTAAAATAGAAGCCTGATA--------GTGCCACTGAATAAAGGGTGCCAGCGAATGTAAATAT
GTTGGCTTGATGTTAATTTCTCTTTGCAACTGCAAATTTGTATACGCTCCGGGTCATGGCCCATCGCCCATCTCGACTCG
TAGTTCACAACTGCGCCTTTGTTCTATGCTATTTCATCGCCATGGTGGTACATAATTAACCTGCTGTAAAAAAAACATCG
ACCTAAGGTCAGCTTCAGCTTTCAGGGTGGTTTGCTGCCTTCACTCTTCTGAACCAACTTGAAAAGATTTGCTGCCTTCA
CTCTTCTGAACCAACTTGAAAAGAAAAGGGTATGGCT-CTAGAGTTCAAACGTTCGCCTGGAGAACTCTTAGAAAAG---
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CAGAGTGAAGTGGATGAGCAACA---ACAGTGCGGGAGCAGCTGAACC--CACAAGACACATGGTCTTCTCCAAACACTT
CGCATATGAGCAGCAGGAATAGAAGTGAAATCACCG-TTACAAGAAGAAGCTCTTGCTCTACAAACAGCCGCTCAGATCG
GTACAACTCTGACAGACAATGAAATCACATTCTACGTTGACAATCAAGTCTTGGCTCAAGCTGCAGCTTCCGGGAACGTA
CACAACAGCCCTGGACATTGGCAGATCGGGCAGTCTGGCTACA-------------------------------------
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-------------------------------------------------TTTCAAGTTCAGGTTTATCATATCAACAGAT
AATGGAGCTCACAACTGTGAGTCTACAGCAGATCTTGCTCCTGCAAGTCTGCATCCAGATATGACTTGTAGCCGTTATAG
TTTCCATTCAGAGGATCTATGCCCAATGCTTTTAAAGCTAGGTAATCTACAGATGAACGACTGTAAAATTACTCATGCAC
ATTCCTCTCAATGTTCTTTTCTTATCATCATTCCTCTCAATGTTAATGATACACTTTGTCCAAAAAAAACATAGCAACCG
TAGCGAGTACAATGAGACACAAACTAACCATATACTCCCTCCGTCCGAAAACGGAGGGAGTACTTGCATTTTGCTAAAAC
GACCAAATGTACGTGTCATATCTGTGCTGTGCTG
>chr2D_453
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----------------------------------------------------TAATAAAGTTTCATGTTAAAATATATTT
TGATATGATCTATAAAAAGATCATGAATTTCTTGCACATTATAGGCTCAAATCCACGATAGGAGTCCATGATTTTTGTTG
TGTATCTCG-----AACGCATTTCATTATGGAAATTTACATAAATGAAATATATAGCCTCTGGTCAAATTTACACAACAA
AAATCATGGAGTCCTATCGTGGATTTGAGCCTATAATGTGCTACACATCCCTCTGTACATATGTATGTTTTTTCAGTTTT
CAATTTTTTTCGTAATTTTCAAACTTAAAAGGTTCGTTTT-TATTTTGCAAAATTTAGGGCTCCATATAAGCCCAGGAGC
CCAAAATCG----------------------------------AAAGGGTCTCACTTTACGGGCCCAACTGACCCAAAGT
CCAAACCGTTCAGTGCATTCTAGACCAGCAGGAGAGTTCCTCGGTCGGTCTCTAGCCGACTCGTGTCTTCCACCTCATTC
TCGATCCTCACGAACTCGCCACGTGTCGAACTGTCACCCACCCACCTCGTCCTCC-TGCTCCGGCAACTCTCTCGACGCT
CCCAG-CGCGAGCATCCTGCTAT-----AAGAACCACCGCCGCAG----AGCCGCCATGACCAACGGAACGAAACGGGGG
AAGAAAAACAGTACACGAGCACGATGGCCACAGCACGAGCGCTCCGTCTCTTCGCCTCGAGCTCGCCAGCGACCCGGCGC
AGCCTGCTAGGCGCGCACGGCCGCGCGCTGTCCGC---GTCGTCTCAAGCCAGCGGCGCGGGCGATCCCGCCGTGCACTC
TGGCGACCCGCCGAGCGACGACTACGCCGAGGGGCCCCCGAAGTTCTCCGGCGCGGAGGAAGCCACCTCGGGC---GGCC
ACGACAAGCACCCGTCA---TCGGCGAAGGCGACGCGTCCGACGGAGGCGTCCGCGAAGGAGCGG---GTCCCGCCGTTC
ACCCCCTCGGGGAAGCTCGGGTCGCAGGAGCTGGCGGACCCGGCGGCAGGGTCCACGTTCACGCAGAGGCGCCGGTGGTC
CTCCAA------GCCCGCCGGCAGCGACCCGCTCGGCGACGCGACGCCCGGGGACGAGGAGGCGGCGGCGAGGAAGGTGC
GGGAGGAGGACCGGGAGTACTACCGGATGCACAAGCCGTCGCCGCTGGCCGAGGTGGAGTTCGCGGATACGAGGAAGCCG
GTGACGCGCGCCACGGACGGCGGCGCCGAGGACCGGCTCGAGCAGGACGTGCCGGGGACCATGGTGGAGGACACCGCGGA
CGCGTCGCTGGCCCGGGCCGAGGCCATGTTCCGCGAGGCGGCTTCGCGCGGCAACCCCGCGTGGCCGCACTCCCGCGCGC
TCGCCGCCATGCTGGCCCGGCAAGGCGGAGAGGGGGCCGATGGCGCCGGCGGCGCCGCGCCCTGGGGAAGCTAAGCTGGT
TCGTGTCTGGCTCGCGTGACCGTGGCGCGCGCGCGCGGCACTGACGCTCCTG-TAAGGATAGGAGTGGAGTGTAGAATAT
AGGTCGCTACAATCGTGTAAAATAGAAGC-----A--------GTACCACTGAATAAAGTTTGCCAGAGAATGTAAATAT
GCTGGCTTGATGTTAATTTCTTTTTGCAACTGCAAG--TGTGTACATTCCGGGTCATGGCTCATCGCCTATCTCGAC---
TAGTTCACAGCTGCGCCTTGCTTTCTGCTACTTCGCA--CCATGGTGGTACAAAACTAACCTATGT---AAAACCCATCG
ACCTAAGGTCAGCTTCAGCCTTCAGAGTAGTTTGCTGCCTTCACTCTTCTGAACCAA-----------------------
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>chr2B_825
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-----------------------------------GTTCCTGGGTCCGTCTCGAGTCGACTCGTGTCTTCCACGTCATTC
TCGATGCGCTCGAACTCACCACGTGTCGAACCGTCGCCCACCCCCGTCCTCCTGCATGCTCCGGCAACTCTCTCGACGCC
ACCAGACGCGACCATCCTGCACCTTATAAAGAACCACCGCCGCACGTACAGACGCCACGACCAACGGAACGGGGAGGACA
AGA------AGCACATGAGCACGATGGCCACCGCACGAGCACTCCGTCTCTTCGCCTCGACCTCGCCAGCGACCCGACGC
GGCCTGCTTGGCGCGCACGGCCGCGCGCTGTCCGC---GTCGTCGCAAGCCAGCGGCGCGGGAGATCCCGCCGTCCACTA
CGGCGACCCTCCGAGCGACGACTACGCCGAGAGGCCCCCGAAGTTCTCCGGCGCGGAGGAAGCCACCTCGGGC---GGCC
ACGACAAGCACCCGCCGTCGTCGGCGAAGACGACGCGGCCGACGGAGGCGTCCGCCAAGGAGCAACGCGTCCCGCCGTTC
ACGCCCTCGGGGAAGCTCGGGTCGCAGGAGCTGGCCGACCCGGCGGCCGGGTCGACGTTCACGCAGAAGCGCCGGTGGTC
CG------CCAAGCCCGCCGGCAGCGACCCGCTCGGCGACGCGACGCCCGGGGACGAGGAGGCCGCGGCGAGGAAGGTGC
GGGAGGAGGACCGGGAGTACTACCGGACGCACAAGCCGTCGCCGCTGGCCGAGGTGGAGTTCGCGGACACGAGGAAGCCC
GTGACGCGCGCCACGGACGGCGGCGCCGAGGACCGGCTCGAGCACGACGTGCCGGGGACCATGGTGGAGGACACCGCGGA
CGCGTCGCTGGCCCGCGCCGAGGCCATGTTCCGGGAGGCGGCCTCGCGCGGCAACCCCGCGTGGCCGCACTCCCGCGCGC
TCGCCGCCATGCTGGCCCGGCAAGGCGGGGAGGGCGGCGATGGCGCCCGGGACGCCGCGCCATGGGGAAGCTAAGCCGAT
TCGTTTCTGGCGCGCGA-----------GCGCGCGCGTCACTGACGCTCCTG-TAAGGATAGGAGCGGGAGTGT-AAAAT
AGGTCGCCACGATCGTGTAAAATACAGAAGGCTGATAGAAGCGGTGCCTCTGAATAAAGCGTGCCAGCGAATGTAAATAT
GTT-GCTTGATGTCAATTTCATTTTGCAACTGCAAG--TGTGTAAATTCCGGGTCATGGCCCGTCGTCCATCTCGAC---
CAGTTCACATCTGCGCCTTGATCTC--------------------------------------TGT---AAAACCCATCG
ACCTAAGGTCAGCTTCAGCTTTCAGGGTGGTTTGCTGCCTCAACTCTTCTGAACCAA-----------------------
-------------ATTTGGCAAGAAAAAGGTATGGTTCCTAGAGTTCAAACGTTCGGCTGGAGAATTCTTCGAAAAGCAC
TCCCAACAGGCATGAGGGCAGGTACATACTCCTCTGTGCAGTTTCACTTGCCCTTGTTCTAAAGATGCTTTGTTCTTTTA
CCCCTGGTACATTAAAACAGAATATCTTGCTCAAAAGCCAAGAACAGATTTCAAAAGCAGATTCCACTTCACGACAAAAA
CAGAGTGAAGTGGATGAAACAACAACACAGTGCAGGAGCAGCTGAACCCACACAAGATACATGGTCTTCTCCAAACACTT
CACGTATCAGCAGCAGGAATAGTAGTGGAATTCACCATTACAAAAAGAAGCTCTTGCTCTACAAACGGCCGCTCAGAT--
--------------GACAGGGAAATCACATTCTATGTTGACAATCAAGTCTA-GCTCAAGCTGCAGCTTGCAGGAACATT
TCTTTTTAAACAGAGGCAAAATACACGACATGTGCGATACAATGTTCCCCAGTTTCTTAGCACCCGCAATGACCCAAAGC
TAATTACTCTCGTGATATAATGTTCTCTAGTTTCTTAGCACCCGCAATGACTCAAAACTTTGCCTCACCTAAGTGTTTCT
CCCGTTCCAAATGGTTTAGAAACGAGCATAATTACTCTCGTGATATAATGTTCCCTAGTTTCTTAGCACCCGCAATAACC
CAAAACTTTACCTCACCTAAGTGTTTCTCTCGTTCCAAATGGTTTAGAAACGAGCATGGGCCGAAGAGCGAATGTTTTTC
TCGTTTCAAACGGTTCAAGAAACGAGCATGGTAAGAGCGGTTTTTCTCGTTTCAAACGGTTCAAGAAACGAGCATGGTAA
GGGAGGCCATCACTCGCTTATTGAGATTTTGCATGCCCAGTTCTCTTATCTCACTGGTCCTTGACGGACTCCTCTAAGTG
GCAATTGGAGGTGTCCATGTGTGCAAGACCCAGTTTCTTAATAATCAACCTTCAAAGCCTAATAGTGTAATGGCACTTCA
AGAAAAGGTGAGCACCCATTTTTTGCTCTTTTTTGCAAAGTTGGCATAGGCGGCAATTGAGCCAACCACGTTTCTCCAAC
TTATCAAAGATTCAAATACGATCTTATAAAGCCAACCAAGAGAAGAATTTTACTTTTGGTGGCGTAAAACCTTTCAAACC
ATGAAATCCATCGAGGAAAGAGTCAACCCAAGGAATTGAGCCTTGTAAGCGGTAGTTGCCGAGTAAAGTCCATCATTTGA
GTGCTTCCAAACGATGTCATCCGCGATTTGTTCATCAAGATGAAAGTCGTTCACGAGTATCCAAAGGGTTAAGAATTGCC
AGACATGGGTACCAGTGATGACCGTGCCAAGTTTGATCTTTAGAATCCAAGCATTCCCTTTTAGGGCCTCGCACACTTTT
CAATTCGTTCTCCTCGAGGCATCAAATATTAGCGCGGCAATGTCCTTAGGTTTGCACCCAACCAACCAAGGTGAGTCCCA
AAATGGCGTTTTGGCGCCATTCCCCACAGTGATCATGGTGGAGGCATAGAAGAAATTAAGGTAATCCGCGGTGCATGGGT
TACCAAGCCCCACCCATAGCTTGTTTGGCTCCTTCCACTCATATCATGGCTATCTTAACCGCAAGGCATGTGCAAATTTT
TCAGTGTTGAGCATCCCGAGACCGCCGTATTCACAAGGATGACACACTATTTGCCAGTTCACCTTGCACTTAGCCCCGGT
CATCTTATCCGAGCCCGATCTAGCTACATTCTTCCAAGTCACCAACGATTTTCAAGTTCAGGTTTATCATATCAACATGA
ACTTT---------------GTCTACAGAGGATCTTGCTCTCACAAGTCTGCATCCAGATACTCCATTCA----------
---------AGAGGATCTAAGTCCAGTGCTTTTAAAGCTAGGTAATCTACAGATGAACGATTGTAAAATTACTCATGCGC
ATTGCTCTCAATGTT-----------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-----------S------------
-S------S----------------------SS---------------S----S--S------S----------------
---------SSSSS------------------------------SSS------S-S------------------------
--------------------------------------------------------S-------S-SS------------
-----------S-------SS--SS-S--S----S-----S---------------------------------------
--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------S-S
-------------------------S-S----S--------------------S----------S---------------
---------S-S-----------------S-----S---S---------------S------------------------
---------------------------------S-S---------------S------------S---------------
-------------------------------S--------------------------SS--------------------
-------SS--------------------------SSS---S-----------------------------S--------
--------S------------------------------S--------------------S----S-SS----SSS----
-S--------S------------S-SSS--------------------S--SS-----------S---------------
--------------------------------------------------------------------------S-----
------SS-------S------------------------------------------------------S---------
-------------------------S---------------S--------------------------------------
-----------------------------------------------------------------S--------------
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--------S------------------------------------S--S--SS---------S-----------------
-----------S-----------------SSSSS-------------------------S--------------------
---------------------S-------------SSS---S---SS------------------------------SSS
---------S---------SS--SSSSSSSS--SSSSSS-------------S--S------SSSSSSS----SS-----
---------------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS-S---SS-------S-------S--------------------S--------S----S---------
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-----------------SSS-SS----------S-----------------------S----------------------
-S-S---S--------------S----S---SSS-S-------S----------------------S-----------SS
SSSSSSSSSSSSSS----SS--------------S----------------SS----------------S-S-----S-S
SSSSSSSSSS-S-SSSSSSSSS-S-SSSSSSSSS-SSSSS-SS-------------------------------------
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-----------------------------------------------------------------------------SSS
-S-SSSSSSSSSSSSSSSSS--------SS----------SSS------------------SSS-S-SS-SSSSSSSSSS
SSSSSSSSS----------S-S---S----------------------------------S-----------------S-
---S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_288
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----------------------------AGCTCGAGTGAGGAGGTGAT--------------------------------
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>reverse_2170
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---------ACTGCGCCTTTGTTCTATGC---------------------------------------------------
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