>input_sequence_65260
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----------------------------ATGCTCGTGTATAACT---CAATATATACCTCGTGTGTTCTCCTCCGGAGTC
TTAAAACCGGGGCACCAAAA-CACAAGCTACGTACGTGCAAAGTTCAGTCAGACTTTGAGTTGACAGACACCACACCAGC
AATGGCCGGAGCAGTAGACGATCTGAAGCTGCTGGGCACGTGGTACAGCCCGTACGTCCTGCGAGTGCGCCTTGCTCTCA
GCATCAAGGGCATCAGTTACGAGTATGGGGAGGAGGACCTCCGGCACAAGAGCGAGCTGCTCCTCCGGTCAAACCCCGTC
CACAACAAGGTCCCCGTGCTGATCCACGGCGGCAAGCCCGTCTGCGAATCGCTGGTCATCCTACAGTACATCGACGAGGC
CTTCGGCGGTGCCGGCCCCGCCCTCCTCCCGGCCGACCCCTACGAGCGCGCCGTCGCCCGGTTCTGGGCCGCCTTCATCG
AGGACACGGTAT-----------TGATCGTTCGACCCGTCTTGTGTTTGTGTGCTTTGAGATTGTGGACGATCGTCTGAC
CGGCGCGGTTTGGTTTTGTGCGTGAGCAGCTCGTGAAAGCGATGAACCAGGCGTCATGGAGCAAGACGGAGGGGGAGAAA
GCGGAGGGGAACAAACAGGCGACTGCTGCGTTGAGGACCCTGGAGGCGGCCCTGAGGGATATCTCCAAGGGGAAGCCCTT
CTTTGGAGGCGACAGCGCCGGGTATGTGGACATCGTGCTCGGCGGCCTCCTCGCAGGGGTGCGCGCCATGGAGGCGATGC
TGGGCGTCAAGGCCTTCGACCCAGTCACGATGCCGCTCCTGGCCGCATGGGCGGACCACTTCGGCGCTCTGGACGCGGTG
GTTGCCGTGATGCCGGACGTGAGCAAGCTTGTGGAGCTCTTCATCACGATGCACGCTCATATTGCGGCCGAGGCCGCCAC
AGCAAACTAA----------------------------------------------------------------------
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----------------------------------------------------------------
>chr1D_1_TraesCS1D01G189700
GGTTGGCCTCATCCTTGGTGCTCGTGTGCACCCATGTGCTTGCCCTTGCTTGTGTCCGTCCATATCTATGACCCCTCTTC
GGTTGGCTGGGTGGAGGTAGATCTTGTGGCGTTGGGTAGATGGCCTCGTGGTTTGGTGAAGTTGTGTACTCATGCAAGTG
GTTGGCTCAATACTTGCAGCGATGCTACATCAACGAACTCCTACAGGCGTTTTACAGGGTGAATTTGAGTTGTCAAAGTG
TTATTGGACAAAGCGAGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTAAGCCCGTCGATGTAGCATTTTTGCAAG
GCTTGTGGCTGATCCGTCTCTATGATGTTTGTGTTGCAGTTGTAGTACCATAAGATTGGCAATACTCAACTTTTCTCCCA
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------TA------------------------------
-----------------------------------------------------TTGTTTTTGTTTTTGTTTTTTGGGTGA
ACGCCCCATCCCATT-----------------------------------------------------------------
--------------------------------------------------------------------------------
---TATTGTTTTCAAGACGCACCATTGGCTAGG-CCACTTTCCAATAACAAGTTTCATGTGACGTAGCATGGTAAAGTTT
GGCAAGATTCTCTTAGTCTTGGCG---------------------AAGTCCAAACTTACTCAACTTTGGCATACTATGGC
GTGGCTAGCTTTGCACCATACAGACACAT-------AGGAACGATTTTTGCGTGCAAGCTGGCAAACAGAAAAATGAATG
TGTGGCTGAAGTTTGTTTGCGGGGCCTCCCTCATACCTGTCCATGCCAAAGAAA-GTAAGCGCGCGGGACATATGTTCAG
ACTTGATTACTTGACCAAGACAGAAAAGTAAGTCGGAAAAGTAGACGGTTTTGAAGAATCAACCAAACAACTAGTCCTTG
GCACCGTTCTAGCAGAAGAGTCTCTGCTATGCTCGTGTATAACT---CAATATATACCTCGTGTGTTCTCCTCCGGAGTC
TTAAAACCGGGGCACCAAAA-CACAAGCTACGTACGTGCAAAGTTCAGTCAGACTTTGAGTTGACAGACACCACACCAGC
AATGGCCGGAGCAGTAGACGATCTGAAGCTGCTGGGCACGTGGTACAGCCCGTACGTCCTGCGAGTGCGCCTTGCTCTCA
GCATCAAGGGCATCAGTTACGAGTATGGGGAGGAGGACCTCCGGCACAAGAGCGAGCTGCTCCTCCGGTCAAACCCCGTC
CACAACAAGGTCCCCGTGCTGATCCACGGCGGCAAGCCCGTCTGCGAATCGCTGGTCATCCTACAGTACATCGACGAGGC
CTTCGGCGGTGCCGGCCCCGCCCTCCTCCCGGCCGACCCCTACGAGCGCGCCGTCGCCCGGTTCTGGGCCGCCTTCATCG
AGGACACGGTAT-----------TGATCGTTCGACCCGTCTTGTGTTTGTGTGCTTTGAGATTGTGGACGATCGTCTGAC
CGGCGCGGTTTGGTTTTGTGCGTGAGCAGCTCGTGAAAGCGATGAACCAGGCGTCATGGAGCAAGACGGAGGGGGAGAAA
GCGGAGGGGAACAAACAGGCGACTGCTGCGTTGAGGACCCTGGAGGCGGCCCTGAGGGATATCTCCAAGGGGAAGCCCTT
CTTTGGAGGCGACAGCGCCGGGTATGTGGACATCGTGCTCGGCGGCCTCCTCGCAGGGGTGCGCGCCATGGAGGCGATGC
TGGGCGTCAAGGCCTTCGACCCAGTCACGATGCCGCTCCTGGCCGCATGGGCGGACCACTTCGGCGCTCTGGACGCGGTG
GTTGCCGTGATGCCGGACGTGAGCAAGCTTGTGGAGCTCTTCATCACGATGCACGCTCATATTGCGGCCGAGGCCGCCAC
AGCAAACTAATTAGAAAAGATTACCATTATTATTACTATTTTGTGGAAAAATGTTACCATTATTTATTGGACCCGGATAA
CCAAAAATAATTTGATAAAGCGAAGATGGGTAGGCAGCTCTCAATGTTGTTTTCGCCATCA-GATGAAACTATACAACAC
CTCATTCTCGATTGTCCGTTAGCCAAACTTCTACGGTGTACGATACATATAGCCTTCAACATTAATCCTTTAATTAGTAT
TAACACGTTATTTGGGACATGACTAAATGAAGTGGAGTCAAATATTGCGGAACATATTCGGATATGGATATGCGCACTAT
TTGGGGCTATATGGAACTGCAGAAATGATATAATCTTTAACGGAAAAAACTTTATCAACTTTTTGCAGGTTATCTATAGA
GTCACTGCTTGGATCCGTATGTGGTCGTTACTCACTCATGCAGATTTCACGGAGCTTTCGGTTACTGCGTGCAACCGTTG
GAAGACGGTAGCACGGATTATCTTGAAACGATTTGGATGACGAGCTAATAACAGGCTAGGTGTTTAGTCATTGTAGTATG
TTTTTT--TTTCCGCCAGCTGTGGCATCTTTTTATC----TTTATTATTCTTG-------TGCTCCTTTTGTGAGCCAGT
ACTGGACCTTAGACTTTGTTTACGTACTTTTGGTTAATAAATTGCATGCAGGCATCATTTTGATGCAAAGGCCGGGGGCT
TTCCTCCTTTTCTAAAAAAAATAAAAATTATTGGACCTAGATATGCATCAGAAGTTAGATTTTTAGGCAGTTCGTAGGAT
GTTATCCCTATCTCCGCCAAATCGCCGGTAAGTGGAAACGAAACTGCTCCACAGACGATGTTTCTGCCCGACCTATGCAC
GACCTGAAAATCCAGCGGCCGGTACCCTGCTTATCATGCGCATGTTCGGTTGGATTTATGTGTCGTGTGTGCATCGTCTG
AATTGTGTCGTCCGCATAGCACTGCTGAAGTGGAAACCCAGGCATAAGTGCAAGCACGATCTCA
>chr1B_1
GGTTGGCTTCATCGTCGGTGCTCGTGTGCATCCTTCTGCTGCCCTTGGTTTGTGTCCGTCCATATATATGACCCCTCTTC
GC-TGGCTAGGTGGAGGTAGATCGTGTGGCGTTGGGCGGATGGCCTCATCGTTTGGTGAAGTTGTGTACTCATGCAAGTG
GTTTGGCT------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------CAAG
GCTTTTGGT--ATCGGTCCCTGTGATGTTTGTGTTGCAGTCGTAGTACCACAAGATTGGTAATACTCAACTCGTCTCCCA
TGAATAAGCTAGCGTCGTCCTCAGAAAAACCAAGCGGCGGCGACTTTTTGAAGATGGAATAAGATTCTCTCCGTCAAGTC
TCTGTCTCAATGGTGTTTCTAGCATTGTTGAAGGGTGTATGGAGGTTTGTCTCCGGCGGAATTCA---------GTTGGC
TTTTGTCTTCGGTGGATCCACATGGATCCTGTCTTCGTTCAACCGTGTTGATGTGTCTATAGGTTGGATCCTTCTGATTT
ACGCTTCTCTTCACAA-TGACGGTCGTTGTTCTGGCGCGCTGGTCGTCCGGTCTTATGGTGCCTTAGCACGACGACTTCA
CGACTGTTTACTACAACAAAGTTTGCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGAAGGCGGCGCGTCTTTGGC
TCGCTCTAGTGCTTGTAGTCATTGCTAGATGGTCTACGAGACTGAATGTACTCCCTCCGTCCCATAATGTAAGACGTTTT
TTGACACTACAATAGTGTCAAAAAGCGTCTTATATTTGGGGTGGAGGGAGTATTTTTTACTTCTGGTGTTCTTTATACTA
CCTTGACAATCGATGAATATATCATAAGTTTTTCTCGCAAAAATAAATAAATAATAAGCTAGCATCAATAGCCAAATT--
----------------------------AAAATTATGCCTTACATTTTCGTAAATTTTAGTGAAATTGCCTAAGTAGGGT
GGGTATTGTTTTCAAGACGCATCTTTGGCTAGGCCCACTTTCCAATAACAAGTTTCATGTGAAGTAGCATGGTAAAGTTT
GGCAAAATTCTCTTAGTCTTGGCAAAGTGTAGTAAATCTTA---TAAGTCTAAACTTAGTCAACTTTGGCATACTATGGC
GTGGCTAGCCTTGCACCATACAGGCCTACTAAGTGGAGGAACGATTTTTGTGTGCAAGCTGACAAACAGG-AAATGAATG
TGTGACTGAAGTTTGTCAGCGGGGTCTCCCTCATACCTATCCATGCCAAA---------GCGCGCGGGACATATGTTCAG
ACTTGATTACTTGACCAAGTCAAAAAAGTAAGTCGGAAAAATAGACGGTTC-GAAGAATCAACCAAACAACTAGTCCTTC
GCACCGTTCTATCGGAAGAATCTCTGCTATG-----------CT---CTATATATGCCTCGCGTGTTCTCCTCCGGAGTC
TTAAAACTGAGGCACCAAAAACACAATCTC----CGTGCAAAGT----TCAGACCTTGAGTTGACAGACACCACACCAGC
AATGGCCGGAGCAGTAGACGATCTGAAGCTGCTGGGCGCGTGGTACAGCCCGTACGTCCTGCGAGTGCGCCTTGCCCTCA
GCATCAAGGGCATCAGCTACGAGTACGCAGAGGAGGACCTCCAGCACAAGAGCGAGCTGCTCCTCCGGTCAAACCCCGTC
CATAACAAGGTCCCCGTGCTGATCCACGGCGGCAACCCCGTCTGCGAGTCGCTGGTCATCCTACAGTACATCGACGAGGC
TTTCGGCGGAGCCGGCCCCGCCCTCCTCCCGGCCGACCCCTACGAGCGCGCCGTCGCCCGGTTCTGGGCCGCCTTCATCG
AGGACACGGTCTTGTGCTTCACATGATCGTTCGACCCGTCGCGTGTTTGTGTGCTTTGAGATTGCGGGCAATTGTCTGAC
CGGCGCGGTTTCGTTTTGCGCGTGAGCAGCTCGTGAAAGCGATGAACCAGGCGTCATGGAGCAAGACGGAGGGGGAGAAA
GTGGAGGGGAACAAACAGGCGACTGCTGCCTTGAACACCCTGGAGGCGGCCCTGAGGGATATCTCCAAGGGGAAG-----
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>chr1A_490
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---------TGATCTGTCCCTATGATGCTTGTGTTGTAGTCTGAGTACCACAAGATTGGCAATACTCAACTTTTCTCCCA
TGAATAAGCTAGCATCGTTCTTAGAGACAG---GCGGGGGCAACTTTTTGAACATGAAGTAAGTTTCTCCCCGCCTAGTC
TCTGTCCCGCTGATGTTTCTAGTATTGTTGGAGGACATGTGAAGGTTTGTCTTCGACGTATCTTGTTGTGATTGGTTGGC
GTTTGTCGTCGGTGGACCCATGTGGATCCGGTCTTTGTTCGTCCGTGTTCATGTGTCTACAGGTTGGATTCTTCTAATAT
ATGCTTCTCTTCATCGGTGACGATTGTTGTTCTGTTGCGCGGGTTGCATGTTCCTATGGGGTCTTAGCATGACAACTTTC
TGACTGTCTACTACAACAAAGTTTGTCCGACTCCGATGAGGGAGGGGC--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------GAAGATGGCGGCACACCTTGGAC
TTGCTCTAGTGCTTGTAGTCATCGCTAGGTGGTCTATAAACCTGGATGTA------------------------------
-----------------------------------------------------TTTTTACTTCTATTGTTCTTTCT-CTA
CCTTGACAGTTGATGAGTAGATAAAAAATATTCTATGAATAAATTAATAAATAATAAGCTAGCATCAATAGCCAAATTGA
AATTACGCCTCACCTTTTTTTTGACGGTAAAATTATGCCACACATTTTTGTAAAA-TTAGTGAATTTCCCTAAGTCGGGT
GGGTATTGTTTTCAAGACGCATCATTGGCTAGGCCCACTTTCCCATAACAAGTTTCATGTGACGTAGCATGGTAAAGTTT
GGCAAGATTCTCTTAGTCTGGTCAAAGTGCAGTAAATCTTGTACTAAGTCCAAACTTAGTCAACTTTGGCATACTATGGC
GTGGCCAGCATTGCACCATACAGGCCTA---AGTGGAGGAACGATTTTTGTGTGCAAGGGGACAAACA------TGAATG
TGTGGCTGATGTTTGCCAGCGGGGCCTCCCTCATACCTGTCCATGCCAAAGAATTGTAAGCGCGGGGGACATATGTTCAG
ACCTGATTACTTGACCAAGTCAGAAAAGTAAGCCGGAAAACTAGACTGTTC-GAAGAATCAACCAACCAACTAGTCCTTC
GCACTGTTCTACCGGAAAAATCTCTGTTGTGCTCTATCTCTATATAACTATATATGCCTCGCGTGTCCTCCTCCGGAGTC
TTAAAACAGAGGCACCAAAA-CACAATCTACGTATGTGCAAAGTTCAGTCAGACCTTGAGTTGACAGACACCACACCAAC
AATGGCCAAAGCAGCAAACGATCTGAAGCTACTGGGCATGTGGGCGAGCCCGTACGTCCTGCTGGTGCGCCTTGCTCTCA
GATCCAAGGGCATCAGCTATGAGTACGCAGAGGAGGACCTCCGGCACAAGAGCGAGCTGCTCCTCCAGTCAAACCCCGTC
CACAACAAAGTCCCCGTGCTGATCCACGGCGGCAAGCCCGTCTGCGAGTC------------------------------
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>chr1A_638
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------------------------------------ACTTTCCAATAACAAGTTTCATGTGACGTAGCATGGTAAAGTTT
GGCAAGATCCTCTTAGTCTGGTCAAAGTGCAGTAAATCTTGTACTAAGTCCAAACTTAGTCAACTTTGGCATACTATGGC
GTGGCCAGCCTTGCACCATACAGGCCTA---AGTGGAGGAACGATTTTTGTGTGCAAGCGGACAAACA------TGAATG
TGTGGCTGATGTTTGCCAGCGGGGCCTCCCTTATACCTGTCCATGTCAAAGAATTGTAAGCGCGCGGGACATATATTCAG
ACCTGATTACTTGACCAAGTCAGAAAAGTAAGCCGGAAAACTAGACTGTTC-GAAGAATCAACCAACCAACTAGTCCTTC
GCACCGTTCTACCGGAAGAATCTCTGCTGCGCTCTATCTCTATATGACTATATATGCCTCGCGTGTTCTCCTCCGGAGTC
TTAAAACAGAGGCACCAAAA-TACAATCTACGTACGTGCAAAGTTCAGTGAAACCTTGAGTTGACAGACACCACACCAAC
AATGGCCGGAGCAGCAAACGATCTGAAGCTACTGGGCATGTGGGCGAGCCCGTACGTCCTGCGGGTGCGCCTTGCTCTCA
GCATCAAGAGCATCAGCTACGAGTACGCAGAGGAGGACCTCCGGCACAAGAGCGAGCTGCTCCTGCGGTCAAACCCCGTC
CACAACAAGGTCCCCGTGCTGATCCACGCCGGCAAGCCCGTCTGCGAGTCGCTGGTCATCCTACAGTACATCGACGACGC
TTTCGGCGGTGCCGGCCCCGCCCTCCTCCCGGCCGATCCCCACGAGCGCGCCGTCGCCCGGTTCTGGGCCGCCTTCATCG
AGGACACGGTAT-----------TGATCGTTCGACCCGTC--GTGTTCGTGTGCTTTCAGATTGTGGGCAATTGTCTCAC
CGGCGCGGTTTGGTTTTGTGCGTGAGCAGCTCGTGAAGGCGATGAACCAGGCGTCATGGAGCAAGACGGAGGCGGAGAAG
GTGGAGGGGAACAAACGGGCGACTGCTGCGTTGAACACCCTGGAGGCGGCCCTGAGGGATGTCTCCAAGGGGAAGCCCTT
CTTCGGGGGCGACAGCACCGGGTATGTGGACATCGTGCTCGGCGGCCTCCTCGCGGGGGTGCGCGCCATGGAGGCGATGC
CGGGCGTCAAGGCCTTCGACCCCGTCACGATGCCGCTCCTGGCCGCGTGGGCGGACCACTTCGGCGCGCTGGACGCGGTG
GCGGCCGTGATGCCGGACGTGAGCAAGCTCGTGGAGCTCTTCATCACGATGCACGCTGCTGTTGCGGCAAACTAATTAG-
-----------TAGAAAAGATTACCATTATTATTATTATTTTTGTGAAA-------------------------------
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>chr1A_638
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------------------------------------ACTTTTCAATAACAAGTTTCATGTGACGTAGCATGGTAAAGTTT
GGCAGGATTCTCTTAGTCTGGTCAAAGTGCAGTAAATCTTGTACTAAGTCCAAACTTAGTCAACTTTGGCATACTATGGC
GTGGCCAGCCTTGCACCATACAGGCCTA---AGTGGAGGAACGATTCTTGTGTGTAAGCGGACACACA------TGAATG
TGTGGCTGATGTTTGCCAGCGAGGCCTCCCTCATACCTGTCCATGCCAAAGAATTGTAAGCGCGGGGGACATATGTTCAG
ACCTGATTACTTGACCAAGTCAGAAAAGTAAGCCGGAAAACTAGACTGTTC-GAAGAATCAACCAACCAACTAGTCCTTC
GCACCGTTCTACCGGAAGAATCTCTGCTGTGCTCTATCTCTATATGACTATATATGCCTCGCGTGTTCTCCTCCGGAGTC
TTAAAACAGAGGCACCAAAA-CACAATCTACGTATGTGCAAAGTTCAGTCAGACCTTGAGTTGACAGACACCACACCAAC
AATGGCCGGAGCAGCAAACGATCTGAAGCTACTGGGCATGTGGGCGAGCCCGTATGTCCTGCGGGTGCGCCTTGCTCTCA
GCATCAAGGGCATCAGCTACGAGTACACAGAGGAGGACCTCCGGCACAAGAGCGAGCTGCTCCTCCGGTCAAACCCCGTC
CACAACAAGGTCCCCGTGCTGATCCACGACGGCAAGCCCGTCTCCGAGTC------------------------------
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>chr1A_638
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------------------------------------ACTTTTCAATAACAAGTTTCATGTGACGTAGCATGGTAAAGTTT
GGCAAGATTCTCTTAGTCTGGTCAAAGTGCAGTAAATCTTGTACAAAGTCCAAACTTAGTCAACTTTGGCATACTATGGC
GTGGCCAGCATTGCACCATACAGGCCTA---AGTGGAGGAACGATTTTTGTGTGCAAGCGGACAAACA------TGAATG
TGTGGCTGATGTTTGCCAGCGGGGCCTCCCTCATACCTGTCCATGCCAAAGAATTGTAACCGCACGGGACATATGTTCAG
ACCTAATTACTTGAACAAGTCAGAAAAGTAAGCCGGAAAACTAGACTGTTC-GAAGAATCATCCAACCAACTAGTCCTTC
GCACCGTTCTATCGGAAGAATCTCTGTTGTGCTCTATCTCTATATGACTATATATGCCTCGCGTGTTCTCCTCCGGAGTC
TTAAAACAGAGGCACCAAAA-CACAATCTACGTATGTGCAAAGTTCAGTCGGACCTTGAGTTGACAGACACCACACCAAC
AATGGCCGGAGCAGCATACGATCTGAAGCTACTGGGCATGTCGGCGAGCCCGTATGTCCTGCGGGTGCACCTTGCTCTCA
GCATCAAGGGCATTAGCTATGAGTACGCAGAGGAGGACCTCCGGCACAAGAGCGAGTTGCTCCTCCGTTCAAACCCCGTC
CACAACAAGGTCCCCATGCTGATCCACGACGGCAAGCCCGTCTGTGAGTC------------------------------
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>chr5A_1995
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-----------------------------------------------------------------------------TAA
CCAAGGATAACTTGCTAAAGCAAAGATGGGTGGGTAGCTCTCGATGTTGTTTTTGCGACCATGATGAAAATATACAACAC
CTC-TTCTCGATTGTCCGCTAACCAAACTGCTTTGGCGTACGATTCATATAGCCTTCAACGTTAATCCTCCCACTAGCAT
CAACACGTTATTTGGGATGTGGCTAAATTGCGTGGAATCCAATATTGCGAGACATATTCAAATAGGAATATGTGCACTAT
TTTGGGCTATATGGAACTGCAGAAATGATATGATCTT-AACGGGAAATTTTTTACCAACTTTTTGCAGGTTATCTACAAA
GCCACAGCTTGGATCCGTACGTGGTCGTTACTCATTCCTGCGGACTCCAGGGAGCTTTTGGTTACTGGGTGCAACCGGTG
GGAGATGGTACCACGGGCTATCTTCAACCGATTTGGATGGCGAGTTAATAATAGGCTAGGTGTTTAGTCATCGTAGCCTT
---TTT--TT--TGCCGGATGTGGCATCTTTTACTT----TACATTTTTTACTTCGTGCAGGCTCCTTTTGTGAGCCAGT
ACTGGACCTCAGACTTTGTCTTCGTACTTTCGTTAAATAAAATGGCTGCATGCATCGTTTTGACGCACAGGTCGGGAGCT
TTCCTCCTTTTCAAAAAAAA------------------------------------------------------------
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>chrUn_1995
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-----------------------------------------------------------------------------TAA
CCAAGGATAACTTGCTAAAGCGAAGATGGGTGGGTAGCTCTCGATGTTGTTTTTGCGACCATGATGAAAATATACAACAC
CTCTTTCTCGATTGTCCATTAACCAAACTGCTTTGACATACGATTCATATAGCCTTCAACGTTAATCCTCCCACTAGCAT
CAACACGTTATTTGGGATGTGGCTAAATTGTGTGGAATCCAATATTGCGAGACATATTCAAATAGGAATATGTGCACTAT
TTTGGGCTATATGGAACTGCAGAAATGATATGATCGTTAACGGGAAATTTTTTACCAACTTTTTGCAGGTTATCTACAAA
GCCACTGCTTGGATCCGTACGTAGTCGTTACTCATTCCTGCGGACTCCAGGGAGCTTTTGGTTACTGGGTGCAACCGGTG
GGAGATGGTACCACGCGCTATCTTCAACCGATTTGGATGGCGAGCTAATAATAGGCTAGGTGTTTAGTCATCGTAGCCTA
---TTT--TTTTCGCCGGATGTGGCATCTTTTACTT----TACATTTTTTACTTCGTTCAGGCTCTTTTTGTGAGCCAGT
ACTGGACCTCAGACTTTGTCTTCGTACTTTCGTTAAATAAAATGGCTGCATGCATCGTTCTGACGCACAGGTCGGGGGCT
TTCCTCCTTTTCAAAAAAAAA-----------------------------------------------------------
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>chr6A_1995
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-----------------------------------------------------------------------------TAA
CCAAGGACAACTTGTTAAAGCAAATATGGGTGGGTAGCTCTCGATGTTGTTTTTGCGACCATGATGAAAATATACAACAC
CTCTTTCTCAATTGTCCGTTAGCCAAACTGCTTTGGCGGACGATTCATATAGACTTCAACATTACTCCTCTCACTAGCAT
CAACACGTTATTTGGGACGTGGCTAAATGGTGTGGAATCAAATATTGCGGGACATGTTCGGATTGGGATATGCACACTAC
TGTGGGCTATATGGAACTGCAGAAATGATATGATCTTGAACC-GAATTTTTTTACCAACTTTTTGCAGGTTATCTACAGA
GCCACTGCTTGGATCCGTATGTGCTCGTTACTCACTTCTGCGAACTCCAAGGGGCTTTTGGTTACTGGGTGCAACTCGAG
GAAGATGGTAACATGGGCTATCTTCAACCGATTTGGATGTCGAGCTAATAATAGACTAGTTGTTTAGTCATTGTAGCATG
---TTT--TTTTCGCCGGATGTGGCATCTTATAATT----TTCCTTTTTG-CTTCATTTAGGCTCCTTTTGTGAGCCAGC
ACTGGATCTCAAACTTTGTGTTCATACTTTCATTAAATAAAATGGCCGCATGCGTCATGCT-ATGCAGAGGTCGGGGGCT
TTCCTTCTTTTCCAAAAGAAAA----------------------------------------------------------
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>chr3D_2000
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--AAAGATAATTTGGTAAAACAAATATGGGTAGGTAGCTCCAGATGTTGTTTTTGTGACCAGGATGAAACTATACAACAC
CTCTTTTTCGAGTGCCCGTTGGCAAAATTACTATGGCGCACAATACATATAGCTTTCAACATTAGCCCTCTAACTTGCAT
TAACACGTTATTTGGGACATGTCTAGATGGAGTGTATCCAAATATGACGAGACATATTCGGATAAGGATATGTGCACTTC
TTTGGGCTATATGGAACAACAGAAATGATATAATCTTTAACTGAAAAAAATTAATCAACATTTTGCAGGTTATCTACAGA
GCTACTGCTTGGATCCGTATGTGGTCGTTACTCACTCATGCGGACTCCAGGGGGATTTTGGTTACTGGGTGCCACCGTCG
GAAGACGCTAGCACGGGTTATCTTCAACCGATTTGAATGGCGAGTTAATAATAGGCTAGGTATATAGGCATCATAGGCTG
--TTGCTATATTCGTCGGTCGTGGCATCTTTTATTT----TCCTTTTTGTGAA--------GCTCCGTTTGTGAGCCAGA
TTTGAACCCCAGACTTTGTTCCGCACA--TTATTTAATAATATGGCTGCATGCATAATTCTGATGTAGGGGCCGGAGGTT
ATCCTCCTTTTCCAAAAAAAA-----------------------------------------------------------
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>chr3A_2004
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------ATAACTTGGTAAAGCAAAGATGGGTTGGTAGCTCCCGATGCTGTTTTTGTGACCATGATGAGACGATTCAACAC
CTCTTTCTAGATTGTCCGTTAGCCAAACTTCTTCGGCGTACTCTTCATATAGCCTTCAACGTGAATCCTTCTATTAGCAT
CAATACGTTATTTGGGATGTGGCTACATAGAGTGGAT-TAAATATTGCGGGACATATTCAGATAGGGATATGTGCACTAG
TTTGGGCTATATGGAACTGCAGAAATGATATGATCTTTAACCGGAAAAAATTTAACAACTTTTTGCAGGTTATCTTCAGA
ACCACTGCTTGGATTTGTACGTGGTCGTTACTCACTCATGCACACTCCAGGGAGCTTTTGGTTACTAGGTGCAACCGGTG
GGAGACGGTAGCACGGGTTATCTTCAACCGATTTGGATGGCCAGCTAATAATAGGATAGGTGTTTATTCATCGTGGCCTG
--TTTT--TTTTCACCGGTTGTGGCATCTTTTTATAATTTTTTGTTATTTCCG-------GGCTCTGATTGTGAGCCAGT
ACTGGATCTGAATTCTTGTTTTCGTACTTTAATTCAATAAATAGGTTGCATGCATCACTCTGATGCAGAGGCCGGGGGCT
ATCCTCCTTTTCAAAGAA--------------------------------------------------------------
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>chr7B_2010
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------------TGGTAAAGCGAAGATGGGTCAGTAGGTACCGA---TGTTTTTTTTACCATGACGAAACGATTCAACAC
CTCTTTCTAGATTGTCCGTTAGCCAAACTTCTTTGGTGTACTCTTTATATAGTCTTCAACGTGAATCCTCCTATTAGCAT
CAACGCGTTATTTGGGATGTGGCTACATGGAGTGGATCTAAATATTGCGGGACATATTCAAATAGGGATATGTGCACTAT
TTTGGGCTATATGGAACTGCAGAAATGATATAATCTTTAACGGGAAAAAATTTAGCAACTTTTTGCAGGTTATCTACAGA
ACCACTGCTTGGATCCGTACGTGGTCGTTACTCACTCATGCGGACTCCAGGAAGATTTTGGTTACTAGGTGTAATCGGTG
GGAAACGATTGCACGGGTTATCTTCAACCGATTTGGATGGTGAGCTAATAATAGGCTAGATGGTTAGTCATCGTAGCCTA
---TAT--TTTTTGCCGGTTGTGGCATCCTTTTTTACC-TTTTGTTATTTCTG-------GGCTCAATTTCTGAGCCGGT
ACGAGACCTGAGACCTTGTTTCTGTACTTTGTTTTAATAAATTGGCTGTATGCATCACTCTGATGCAAAGGCC-GGGGAT
ATCCTCCTTTTCAAAAAAAAATA---------------------------------------------------------
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>chr5B_2097
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--------------------AGCCAAGCTTGTATGGCGTACGATACATATAGACTTCAACATTAATCCTTCAATTAG---
TAACACGTTATTTGGGACATGGCTAAATGGAGCGGATTCAAATATTGCAGGACATATTCGGATAGGGATATGTGCACTGT
TTTGGGCTATATGAAACTGCAAAGGTGATATGATCTTTAATGGAAAAAACTTTATCAAC-TTTTGCAGGTTATCCACATA
GCCACTGCTTGGATCCGTACGTGGTCGTTACTCACTCATGCGGACTCTAGGGGGCTTTTGGTTACTGGGTGCAACCATTG
GAAGACGGTAGCACGGATTATCTCCAACCAATTTAAATGGCGAACTAATAATAGGCTAGGTGTTTAGTCATCTTAAC---
-TTGTT--TTTTCGCTGGCTGTGGCATCTTTTTATC----TTTACTGTTCTTG-------TGCTCCTTTTGTGAGCCAGT
ACTGGCCCTTAGACTCCGTTTGCATACTTTTGGTTAATAAATTGGCTGCATGCATCATTATG------------------
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>chr5B_2097
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--------------------AGCCAAACTTGTATGGCGTACGATACATATAGACTTCAACATTAATCCTTCAATTAG---
TAACACGTTATTTGGGACATGGCTAAATGGAGCGGATTCAAATATTGCAGGACATATTCGGATAGGGATATGTGCATTGT
TTTGGGCTATATGAAACTGCAAAGGTGATATGATCTTTAATGGAAAAAACTTTATCAAC-TTTTGCAGGTTATCCACATA
GCCACTGCTTGGATCCGTACGTGGTCGTTACTCACTCATGCGGACTCTAGGGGGCTTTTGGTTACTGGGTGCAACCATTG
GGAGACGGTAGCACGGGTTATCTCCAACCAATTTAAATGGCGAACTAATAATAGGCTAGGTGTTTAGTCATCTTAAC---
-TTGTT--TTTTCGCCGGCTGTGGCATCTTTTTATC----TTTACTGTTCTTG-------TGCTCCTTTTGTGAGCCAGT
ACTGGCCCTTAGACTCCGTTTGCATACTTTTGGTTAATAAATTGGCTGCATGCATCATTATG------------------
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>chr5B_2097
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--------------------AGCCAAACTTGTATGGCGTACGATACATATAGACTTCAACATTAATCCTTCAATTAG---
TAACACGTTATTTGGGACATGGCTAAATGGAGCGGATTCAAATATTGCAGGACATATTCGGATAGGGATATGTGCACTGT
TTTGGGCTATATGAAACTGCAAAGGTGATATGATCTTTAATAGAAAAAACTTTATCAAC-TTTTGCAGGTTATCCACATA
GCCACTGCTTGGATCCGTACGTGGTCGTTACTCACTCATGCGGACTCTAGGGGGCTTTTGGTTACTGGGTGCAACCATTG
GGAGACGGTAGCACGGGTTATCTCCAACCAATTTAAATGGCGAACTAATAATAGGCTAGGTGTTTAGTCATCTTAAC---
-TTGTT--TTTTCGCCGGCTGTGGCATCTTTTTATC----TTTACTGTTCTTG-------TGCTCCTTTTGTGAGCCAGT
ACTGGCCCTTAGACTCCGTTTGCATACTTTTGGTTAATAAATTGGCTGCATGCATCATTATG------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------
>SNPs
-------S-----S-S--------------S--S-S----SS--S-S-S----------------S--------------
-SS-----S--------------S------------SS---------S-S------------------------------
---S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----
----S---S-----S---S---------------------S---------S-----------------------------
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-------------------------------------------------------S--SS-SS-S-----S---SSSSS-
S-SSSS--SS-S--S-----------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------S----------------------------------------------------------
-----------------------S----------------------------------S---------------------
---------S-------------S-SS-S---------------------S----------S-------SS---------
----------------SS-----------------------------------S--------------------------
-------------------S--------------------S---------SS---------------------------S
-----------S-S-----S--------------SSSSSSS-------S------S-----S------------------
-------S-S----------------S---------------------------S-------------------------
--------------------------------------------------------------------------------
----------------S--------S-SS---------------------------------------------------
-----------------------------------------------S--------------------------------
S-------------------------------------------------------------------------------
----------------------------------------SS-------------------------S-S--S-------
--------------------------------------------------------------------------------
-S--------------------------------SS--------------------------------------------
---S--S---------S-------------------------------------S-------------------------
S---------------------S-----------------------S--------------------S------------
-SS--------------------------S---------------------------SS-S-------SS-SSSSSSSSS
SSSSSSSSSSS------------------------S------SSS----SSSSSSSSSSSSSSSSSSSSSSSSSSSS---
-----S--------S-------------------S-------S----------S--S-S---------------------
---S-------------------------------------------------------------------------S--
---------------------S-------S------S-------------S-------------S---------------
--S-------------------------------------------------------------------------S---
-S------------------------------------------S-S--S--------S--------S------------
------------------------S--S-----------S-----------S------------------------S---
S----------S----S---------------------------------------------------------------
---------------------S----------------------SS----S-----------------------------
------------S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_182
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--TGGCTCAATACTTGCAGCGA----------------------------------------------------------
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>reverse_2873
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------------------------------------------------------------------------GCCGCCAC
AGCAAACTAATT--------------------------------------------------------------------
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>forward_210
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------------------------------CAACGAACTCCTACAGGCGT------------------------------
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>reverse_3044
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---ATTCTCGATTGTCCGTTAGCCA-------------------------------------------------------
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----------------------------------------------------------------
