>input_sequence_65238
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------ATGGAGTCCGACCCCGACCGCGGCGTCTCCCTCCTCTCCCCCGCCCCAAACCCTAGCCACCAACCCTGCCTCCG
GGCGGCCAAGTCCACGGCCTTCAAGCGCGAGGAGCGCC------------------------------------------
--------------------------------------------------------------------------------
----------------------------------GCAAGCACAAGGAGCAGAAGCGGGAGCGCAAGCGACAGGAGAA---
---------CCTCGCCCTAGCGCTCGCGCAGTGGGAGCCCCTCGGCGCCCCACCCCGCCCGGCCGCCACCTCCACTCCTG
GCCCGCCACCCGACGACAAACCCTGGCCGTGTGACCCGCCCTCTCCCGCGGACGCCGCGCCCTCCGCGGCCTGGGGCTGG
GGCCCTCCGGCGGAACCCTCCGCCGACAGGGGCTGGGGCCTCCCAGCGGAACCGCCAGCGCAGCCCCCGG------CAAG
GTGCCCCCAGGCCGACGCGGTGAGGGCGTGCCGCGCATTATTTGGAGAGCACGCCGATAACGACGACGACGGGGAGGAGG
---GGGAGGAAGAGGAAGGGGATGTGGCCCGGTTCTTCGACGAGCTTCTGGAGAAAGACGCGGGCCTGAGGGGGTTCTAC
CAGGCGGAGC--GGGAGACGGGGCGGTTCCTGTGCCTGGTGTGCGAGGGGGTCGGCGCCAGGGCGGGGAAGCGGTTCCCC
GGCTGCGCGGCGCTGGTGCAGCACGCCGGCTCGGTCGCCCGGACCAAGAGGAGGCTCGCCCACCGCGCCTTCGCCGACGC
CCTCGGCCGCCTGCTCGGCTGGGGCGCCGGCCGGACCACCCCTGTTCCGGTAAACATGTTACCTGGTTCCTGTCAAAATG
TTGCTTAGTCTGTACCATGTCTAATTGTCTATCACATTGCTGAATTTTTTGTTGCAATTGTACGAAATGCAGGCTGATTG
TGACAACGTTGGCGCTATTGATCAAGCTGAGCACTTGGATGCTTCTGAATGTGCAGAAATGGAGGTGGCCTAA-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>chr3B_1_TraesCS3B01G330300
ACTCTGAGCTTCAGATGTGCTCTAAAAAACAGCCTATATATTTGGTGTATAATCTCAGTTCTCAAC-----TAAGACATA
GGATTCTCATAACGAAGTGGTAATCCACATCTGCACTCTTGTTTTGTGTTGACTTGTTACATTCTGTTTATCGAAGTGGT
TGAC---------------------------TTGGTGCATCATGTCTCTCCGTTATTTTACGTCTCTCCGTTATTTTACG
GGGAAGTATTGGTACTGAACTTATTATTATTGAACGAGTGATTCAACTAGGACACTGCTGATGCTGTTATGTTGGTTGAG
AC-TAAGATATTTTCTTATGGCTATTAAGCATCCAAAGACCTAGCTGCTCTTGATTCGAACACGCTTAGAGAGCAGATAG
ATATTCCGC-----------------------------------------------------------------------
--------------------------------AAATCGACCTGTATGTGTT-CAAAAAGGAAAGACTGATTTGTTCAGAT
A--------------------------------CTATATGTATTCCGTATTTGCACTGCAAAAATGGACCTGTATGTGTT
AAAAAAGGGAGACTGATTTTGTTAATCATATTTTGTATGTTCATAAAGTTCATGTACTCTATGTGCAAAGGCTGGCACGG
CGGTTTCCTTTCAGGAAGGAGATGGACAAATCAAAACTTCTCTGAAATCAGATATTTACGATTTTACGATCCAAACTAAG
CTCTCCGATTCTATGATTTTGTCACTAGAATCTACATACGTTTCTATTATTCTGATAGTTAAGATTAGATTTTTACGATA
TGCGATCTTATCATCAGAGCTTTGATCCGATTCTGATTCTAACAGTTAAAATTTTATGATTCAGACCTGTGATC------
---TGATTCAGAATCACGATTT------------------ATGACGTGCTCCTCTGTTTTGGGTACAC-----ACTCCAC
GG-CTTCATCCGGCAAAGCCACAGCCACCCAACCCAGCTGCATCACATGGTGTAGGATTTTCGGCTCGAACAGCGTGCAG
ACACCATCGGGCTACCGGTTCGTTCATTCATCCCGCA-CGCACCTACACGCTGACGCAGCTCTCGGGCGCCGCCGCCA--
-GGGCAATGGAGTCCGACCCCGACCGCGGCGTCTCCCTCCTCTCCCCCGCCCCAAACCCTAGCCACCAACCCTGCCTCCG
GGCGGCCAAGTCCACGGCCTTCAAGCGCGAGGAGCGCC------------------------------------------
--------------------------------------------------------------------------------
----------------------------------GCAAGCACAAGGAGCAGAAGCGGGAGCGCAAGCGACAGGAGAA---
---------CCTCGCCCTAGCGCTCGCGCAGTGGGAGCCCCTCGGCGCCCCACCCCGCCCGGCCGCCACCTCCACTCCTG
GCCCGCCACCCGACGACAAACCCTGGCCGTGTGACCCGCCCTCTCCCGCGGACGCCGCGCCCTCCGCGGCCTGGGGCTGG
GGCCCTCCGGCGGAACCCTCCGCCGACAGGGGCTGGGGCCTCCCAGCGGAACCGCCAGCGCAGCCCCCGG------CAAG
GTGCCCCCAGGCCGACGCGGTGAGGGCGTGCCGCGCATTATTTGGAGAGCACGCCGATAACGACGACGACGGGGAGGAGG
---GGGAGGAAGAGGAAGGGGATGTGGCCCGGTTCTTCGACGAGCTTCTGGAGAAAGACGCGGGCCTGAGGGGGTTCTAC
CAGGCGGAGC--GGGAGACGGGGCGGTTCCTGTGCCTGGTGTGCGAGGGGGTCGGCGCCAGGGCGGGGAAGCGGTTCCCC
GGCTGCGCGGCGCTGGTGCAGCACGCCGGCTCGGTCGCCCGGACCAAGAGGAGGCTCGCCCACCGCGCCTTCGCCGACGC
CCTCGGCCGCCTGCTCGGCTGGGGCGCCGGCCGGACCACCCCTGTTCCGGTAAACATGTTACCTGGTTCCTGTCAAAATG
TTGCTTAGTCTGTACCATGTCTAATTGTCTATCACATTGCTGAATTTTTTGTTGCAATTGTACGAAATGCAGGCTGATTG
TGACAACGTTGGCGCTATTGATCAAGCTGAGCACTTGGATGCTTCTGAATGTGCAGAAATGGAGGTGGCCTAATTTAGCT
CATCGTGCTAACTTAGAGATTCTTTCTT-GGTCAGAAAGCTTGGAAATACATGGGATTTGGTTTGGTGTATTGATAACCT
GGATGCTCATTGTCAACATCTGCGTGTAATCTAGTTCGATGCTCTGGTAACCTTGATGCTTGTTTTTAACATCTCAAGCT
GGATCTAAAAGTTTCTGATTTGCAGTGC-ATCGTATTTCAGTTGTTGATTCCTGGTGTGTATTGATCTTGAGTTTGAAGG
AAACGAAAGTAAATCTCTATG------------------CTAACTGCTGAGAAGTA----TATGGAGTAGTTTCTTTTGT
GAA--------GGAGGCCATTGTCTCCTTGTCCTGAAAACGAATTCACAAATCATAACTGCTGTCCGCAAGTATGAATAT
TCCAAACACA----------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------ATCTACAATGATGTGATGACACGGCTTAAGATAGTACACATAAAGTAAACATACCACC
ACCTGATAAAGAAAACTTTAAGATTCATATCAGTGTCTTGTTAGAATTGATTTTTCATTTGTTGATTTTATCTTTTTCAA
ATGACGATAGATACTCCCTCTGTAACCTTTTGTAAGACGGCTTTTAGTAAAAAAAAAAACGTCTTATAAAGAAGTTACAG
AGCGATCACAGTACTGTCACCCTGAACACCCCATAGCTACCAGTCAGGTGCCGCTGGAGTAATTAGCTGGAAGTTTTTCA
CTGAAGCAGCCATAACCCGGCCATGGATATTCAAGCACCAGCACCTCAAATGCTCGTGCCATTGTGCCAACTTATTATCT
AGAGCCA-------------------------------------------------------------------------
-------------------------------------------------------------------------ACGAGCT
CGGGATGCTGAGTTTCTCTGCCTCCTATGATCTATTGAGCCAACATGATCATCATTGGTATTATCATTATCACTATCACT
AGGCATATGCTTATCATCAGATTGTGTCTCAGCATCAGAAATAGAAACATCATCATGATTCTCAATACTTTTTTCTATAA
TAGGTTCATCAGGAGTATGCAAAGTTTTATTCATACTCTTT---TTCTTCTTCTTAAGTGACCTAG
>chr3A_1
ACTGTGAGCTTCAGATGTGCTCTACAAAACAGCCTATAAGTTTGGTGTATGATCTAAGTTCTCAAGTACAGTAAGACATA
GGATTCTCATAACGAAGTGGTAATCCACATATGCACTCTTGTTTTGCGTTGACTTGGTACATTCTGTTTATCGAAGTGGT
TATCCACTCAATCTTTCTTGTTTGATTTTATTTGGTGCATTAT------------------GTCTCTCCGTTATTTTACG
GGGAAGTATTGGCACTGAACTGATTATTATTGAACGAGTGATTCAACAAGGACACTGCCGATGC----------------
--------TATTTTCTTGTGGCTATTAAGCATCAAAAGCCTTTGCTGCTCTTGATTCAAATGCGCGTAGAGAGCAGATAT
ATACTACCTCCGTAAACTAATATAAGAGCGTTTAGAATACTAAAGTAGTAATCTAAACACTCTTATATTAGTTTACAGAG
GAAGTACTATGTATTCTGAGCTGGTACTGCAAAAATGGACCTGTATGTGTT-AAAAAAGGAAAGACTGATTTATTCAGAT
ACTATGGCTCCGCGGAGGACTGCCGAACAGGCGCTATATATATTCCTTATTTGCACTGCAAAAATGGACCCGTATGTGTT
CAAAAAGGGGGACTGATTTTGTTAATCATATTTTGTATGTTTATAAAGTTCATGTACTCTATGTGCAACAGCGGGCACGG
CGGTTTCCTTTCAGGAAGGAGATGGACAAATCAAAACTTCTCTGAAATCGGGTTTTATGGTTTTAA-GATCCAAACTAAC
CTCTCTGCTTCTATGATCTAGTCACTAGAA----------TTTCTATGACTCTGATAGTTAAGACTAGATTTTTACGATT
TGCGATCTTATCATCAGAGCTTTGATCCGATTTTGATTCTAATAGTTAAGATTCTACGATTTGCGATCTTATCATCAGAG
CTTTGATCCAGAATCACA------------GTGATACAGCATGACGTGCTCCTCTGTTTTGGGTACACCACACACTCCAC
GGCCTTCATCCGGCAGAGCCACAGCCACCCAACCCAGCTGACACCATCAAAATCGC------------------------
---------GGTTACGGGTCTGTTCATTCATCCCGCACCCCACCTACACGCAGACGCAGCTCTCGGCCGCCGCCGCCACC
AGGGCAATGGAGCCCGAGCCCGACCGCGGCGTCTCCCTCCTCTCCCCCGCCCCAAGCCCTAGCCACCAACCCAGCCTCCG
GGCGGCCAAGTCCACGGCCTTCAAGCGCGAGGAGCGCC------------------------------------------
--------------------------------------------------------------------------------
----------------------------------GCAAGCACAAGGAGCAGAAGCGGGAGCGCAAGCGGCAGGAGAA---
---------CCTCGCCCTCGCGCTCGCGCAGTGGGAGCCCCTCGGCGCCCCACCCCGCCCGGCCGCCACCCCCACTCCCG
GCGAGCCACTCGACGACAAGCCCTGGCCGTGTGACCCGCCATCTCCCGCGGACGCCGCGCCCTCCGCCGCCTGGGGCTGG
GGCCCTCCGGCGGAGCCCTCCGCCGACAGGGGCTGGGGCCTTCCAGCGGAACCGCCGGCGCAGCCGCCGGTCGCGGCAAG
GTGCCCCCAGGCCGACGCGGTGAGGGCGTGCCGCGCGTTGTTTGAAGAGCACGCCGATAACGACGACGACGGCGACGAGG
AGGGGGAGGAAGAGGAAGGCGATGTGGCCCGGTTCTTCGACGAGCTGCTGGAGAAAGACGCGGACCTTAGGGGGTTCTAC
CAGGTGGAGC--GGGAGACGGGGCGGTTCCTGTGCCTGGTGTGCGAGGGGGTCGGCGCCAGGGCGGGGAAGCGGTTCCCC
GGCTGCGCCGCCCTGGTGCAGCACGCCGGCTCGGTCGCCCGGACCAAGAGGAGGCTCGCTCACCGCGCCTTCGCCGACGC
CCTCGGCCGCCTGCTCGGCTGGGGCGCGGGCCGGACCACCCCTGTTCCGGTAAACATGTTACCTGGTTCCTGTCAAAATG
TTGCTTAGTAC-TACCATGTCTAATTGTCTATCACATTGCTGAATTTTCTGTTGCAATCGTACGAAATGCAGGCTGATTG
CGACAACGATGGCGCTATTGATCAAGCTGAGCACTTGGATTCTTCTGAATGTGCAGAAATGGAGGTGGCCTAATTTATCT
CATCGTGCTAACTTAGAGATTCTTTCTT-GGTCAGAAAGCTTGGAAATACATGTGATTTGGTTTGATGTATCGATAACCT
GGATGCTCATTGTCAACATCTGTGCGTAAT--------ATGCTCTGGTAACCTTGATGCTTGTGTTTAACATCTCAAGCC
GGATCTAAAAGTTTCTGATTTGCAATGC-ATTGTATTTCAGTTGTTGATTCCTGGTGTGTATTGATCTTGAGTTTGAAGG
AAA-------------------------------CGAGTCTAACTACTGAGAATTACTTATATGCAGTAGTATTTTTCTG
AACCTATGGTTGGAGGCCATTGTCTCCTTATCCTGAAAACAAATTCAGAAATCACAACAGCTGTCCG-AAGTATGAATAT
TCCAAACACATATCTACCTTATTTCAT-----------------------------------------------------
--------------------------------------------------------------------------------
-------AGTACATACAGGGCAATCTACAATGATGTGGTGACACAGCTTAAGAT-----------AGTAAACATACCACC
TCCTGATAAAGAAAACTTTAAGATTCATATCAGTGTCTTGTTAGAATTGATTTTTCTTTTGTTGATTTTATCTTTTTCAA
ATGGCCATATATACTCCCTCTGGAACCTTTTATAACAGGGCTTTTAGTC----AAAAAACGTCTTATAAAGAAGTTATAG
AGGG----------------------------------------------------------------------------
--------------------------------------------------------------------------------
------A-------------------------------------------------------------------------
-------------------------------------------------------------------------ACGAGCT
CGGGATGCTGAGTTTCTCTGCCTCCTGTGATCTATTGAGCCAACATGAACATCATTGGTATTGTCATTATCATTATCACT
ACGCATATGTTCATCATCAAATTGTGTCTCAGCATACGGAATAGAAATATCATTATGATTCTCAATAGTTTTTTCTGTAA
CAGGTTCATCAGAAGTATGCAAAGTTTTATTCCTACTCTTTTTTTTCTTCTTGTTAAGTGAACTAG
>chr3D_1
ACTGTGAGCTTCAGATGTGCTCTAAAAAACAGCCTATATATTTGGTGCATGATCTCAGTTCTCAAC-----TAAGACATA
GGATTCTCATAACGAAGTGGTAATCCACGTCTGCACTCTTGTTTTGTGTTGACTTGTTACATTCTGTTTATCGAAGTGGT
TGAC---------------------------TTGGTGCATTAT------------------GTCTCTCCGTTATTTTACG
GGGAAGTATTGGTACTGAACTTATTATTATTGAACGAGTGATTCAACTAGGACACTGCTGATGCTGTTATTTTGGTTGAG
ACTTAAGATATTTTCTTGTGGCTATTAAGCATCCAAAGCTTTTGCTGCTCTTGATTCGAACACGCTTAGAGAGCAGATAG
ATA-----------------------------------------------------------------------------
-------------TTCCGAACTGGTACTGCAAAAATGGACCTGTATGTGTTAAAAAAAGGAAAGACTGGTTTGTTCAGAT
ACTAT--------------------------------ATGTATTCCGTATTTGCACTGCAAAAATGGACCTGTATGTGTT
AAAAAAGGGAGACTGATTTTGTTAATCATATTCTGTATGTTCATAAAGTTCATGTACTCTATGTGCAACAGCTGGCACGG
CGGTTTCCTTTCAGGAAGGAGATGGACAAATCAAAACTTCTCTGAAATCGGATATTTACGAATTTACGATCCAAACTAAG
CTCTGCGACTCTATGATTTTGTCACTAGAATCTACATACGTTTCTATGATTCTGATAGTTAAGATTAGATTTTTAGGATT
TGCAATCTTATCATCAGAGCTTTGATCCGATTCTGATTCTAATAGTTAAGATTTTATGATTCAGACCTTTGATC------
---TGATTCAGAATCACGATTTATGACTACGTGATACAGCATGACGTGCTCCTCTGTTTTGGGTACAC-----ACTCCAC
GGCCTTCATCCGGCAGAGCCACAGTCACCCAAC------------------------------------ACAGCGAGCAG
GCACCGTCAGGCTACCGGTTCGTTCATTCATCCCGCA-CCCACCTACACGCAGACGCAGCTCTCGGCCGCCGCCGCCGCC
AGGGCAATGGAGCCCGAGCCCGACCGCGGCGTCTCCCTCCTCTCCCCCGCCCCAAACCCTAGCCACAAACCCTGCCTCCG
GGCGGCCAAGTCCATGGCCTTCAAGCGCGAGGAGCGCC------------------------------------------
--------------------------------------------------------------------------------
----------------------------------GCAAGCACAAGGAGCAGAAGCGGGAGCGCAAGCGACAGGAGAA---
---------CCTCGCCCTCGCGCTCGCACAGTGGGAGCCCCTCGGCGCCCCACCCCGCCCGGCCGCCACCTCCACTCCCG
GCGAGCCACCCGATGACAAGCCCTGGCCGTGTGACCCGCCATCTCCCGCGGACGCCGCGCCCTCCGCCGCCTGGGGCTGG
GGCCCTCCGGCGGAACC------------------------------------GCCGGCGCAGCCGCCGGTCGCGGCAAG
GTGCCCCCAGGCCGACGCGGTGAGGGCGTGCCGCGCGTTGTTTGAAGAGCACGCCGATGACGACGACGACGGCGA---GG
AGGGGGAGGAAGAGGAAGGCGATGTGGCCCGGTTCTTCGACGAGCTTCTGGAGAAAGACGCGGGCCTGAGGGGGTTCTAC
GAGGCGGAGC--GGGAGACGGGGCGGTTCCTGTGCCTGGTGTGCGAGGGGGTCGGCGCCAGGGCGGGGAAGCGGTTCCCC
GGCTGCGCCGCGCTGGTGCAGCACGCCGGCTCGGTCGCCCGCACCAAGAGGAGGCTCGCGCACCGCGCCTTCGCCGACGC
CCTCGGCCGCCTGCTCGGCTGGGGCGCCGGTCGGACCACCCCTGTTCCGGTAAACATGTTACCTGGTTCCTGTCAAAATG
TTGCTTAGTAC----CATGTCTA-------ATCACATTGCTGAATTTTTTGTTGCAATCGTACGAAATGCAGGCCGATTG
CGACAACGATGGCGCTACTGATCAAGCTGAGCACTTGGATGCTTCTGAATGTGCAGAAATGGAGGTGGCCTAATTTAGCT
CATCGTGCTAACTTAGAGATTCTTTCTTTGGTCAGAAAACTTGGAAATACATGTGATTTGGTTTGATGTATCGATAACCT
GGATGCTCGTTGTCAACATCTGCGTGTAATCTAGT-------TCTGGTAACCTTGATGCTTGTTTTTAACATCTCAAGCT
GGATCTAGAAGTTTCTGATTTGCAGTGTAATCGTATTTCAGTTGTTGATTCCTGGTGTGTATTGATCTTGAGTTTGAAGG
AAACGAAAGTAAATCTCAATGAGTGGAAACACCTCGAGTCTAACTGCTGAGAAGTACTATATGGAGA-AGTAATTTTCTG
AACCTATGGTTGGAGGCCATTGCCTCCTTATCCTGAAAACAAATTCACAAATCACAACTGCTGTCCG-AAGTATGAATAT
TCCAAACACATGTTTAACTTATTTCATACTCTCTCCGTCTTAAAATTCTTGTCTTACATTTGTTTATTGTCTTACATTTG
TCTAAATACGGATGTATCAAGTCACGTTTTAGTATTAGATACATCCGTAGCTAGACAAATCTAAGACAAGAATTTTGAGA
CGGAGGGAGTACATGCAGAGCAATCTACAATGATGTGATGACACAGCTTAAGAT-----------AGTAAACATACCACC
ACCTA-------------TAAGATTCATATCAGTGTCTTGTTAGAATTGATTT--CTTTTGTTGATTTTATCTTTTTGAA
ATGACCATAGATGCTCCCT-----ACCTTTTATGAGACGGCTTTTAGT-----AAAAAACGTCTTATAAAGAAGTTACAG
AGGG----------------------------------------------------------------------------
--------------------------------------------------------------------------------
------ATCACAGTACTGTCATCTTGAACACCCCATAGCTACCAGTGCCGCTGGAGTAATTAGTTGGAAGTTTTTCATTG
AAGCAGCCATAGATATTCAAGCACCAGCACCTCAAATGCTCGTGCCATCGTGCCAACTTATTATCTAGAGCCAACGAGCT
CGGTATGGTGAGTTTCTCTGCCTCTTGTGATCTATTGAGCCAACATGATCATCATTGGTATTATCATTAT----------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>chr3B_940
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------GTTCGTTCATCGTGCA-CCCACCCACACGCTTACGCAGATCTCGGGCGCCGCCGCCA--
-GGGCAATGGTGTCTGAGCCCGACCCCGACGTCTCCCTCCTGCCCCCCGCTCCGAGCCATAGCCACAAACCCTGCCTCCG
GGCAGTCAAGTCCACGGCCTTCAAGCGCGAGGAGCGCCACAAGCGCAAGGAGCAGAAGCGGGAGTTCAAGCGGCAGCGCA
AGGAGCAGAAGCGGGAGCGCAAGGAGCAGCGCAAGGAGCAGAAGCGGGAGCGCCGCAAGCGCAAGGAGGAGAAACGGGAG
CGCCGCAAGCGCAAGGAGGAGAAGCGGGAGCGCCGCAAGCACAAGGAGGAGAAGCGCGAGCGCAAGCGGCAGCGCAAGCG
GGAGGACAGCCTCGCCCTAGCGCTCGCCCAGTGGGAGCCCCTCGGTGCCCCAGCTGGCCCGGCTGCCGCCTCCGCCCCCG
GCGCGCCACCCGAAGACAGGCCCGGGCCGCGTGACCCGTCCTCGCCCGCGGGCGCCGCGCCCTCCGCCTCCTGGATCTGG
GGCCCTCCAGCGGAACCCTCGGCCGACAGGTC------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------CTAG
GGGGCGGAGCGAGGGAGACGGGGCGGTTCCTGTGCCTGGTGTGCGAGGGGATCGTCGCCAAGGCGGGCATGCGGTTCCCC
GGCAGCGCGGCGCTGGTGCAGCACGCCGGCTCGGTCGCCCGGACCAAGAGGTGGCTCA-------------CGCCGACGC
CCTTGTCTGCCTGCTCGG----------------ACAACGCCCTTTCCGGTAAACTTGTTACCTGGTTTCTATCAAAATG
TTGCTTA----GTACCATGTCTAATTGTCTATCACAT-GCTGAATGATTTGTTGCAATCGTAAGAAATGCAGGTAGATTG
TGACAACGATGGCGCTTGTGATCAAGCTGAGCACTTGGATGATTCTGCAAGTGCAGAAATGAAGGT-GCCTAATTTTGCT
CATCGTGCTAAGTTAGAGATTCTTTCTT-GGTCAGAAAGCTGAGAAATACATGTGATCTAGTTTGATGTATCGATAACCT
GGATGCTCATTGTCAACGTCTGCGTGTAATCTAGTTGGATGCTCTGGTATCGTTGATGCTTGTTTTTAACATCTAAAGCT
GTATCTAAAAGTTTCTGATTTGCAGTGC-ATCGTATTTCAATTGTTGATTCCTGATGTTTATTGATCTTGAGTTTGAAGG
AAATGAAAGTAAATATCTATG-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>chr3A_1521
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------GCCCGAGGGGATTCTAC
GAGGCGGAGCGAGGGAGACGGGGTGGTTCCTGTGCCTGGTGTGCGAGGGGATCGGCGCCAAGGCGGGCATGCGGTTCCCG
GGCT-------GCTGGTGCAGCACGCCGGCTCGGTCGCCCGGGCCAAGAGGCGGCTCACGC----------CGCCGCCGC
CCTGGGCTGCCTGCTCGG----------------ACAACGCCCTTTCCGGTAAACTTGTTACC--------------ATG
TTGCTTA----GTATCATGTCTAATTGTCTATCACATTGCTGAATATTTTGTTGCAATCGTAAGAAATGCAGGTAGATTG
TGACAACGATGGCGCTTGTGATCAAGCTGAGCACTTGGATGATTCTGAAAGTGCAGAAATGGAGGTGGCCTAATTTTGTT
CTTCGTGCTAAGTTAGAGATTCTTTCTT-GGTCAGAAAGCTTAGAAATACATGCGATCTGGTTTGATGTATGGATAACCT
GGATGGTCATTGTCAACGCCTGCGTCTAATCTAGTTCGATGCTCTGGTATTGTTGATGCTTGTTTTTAACATCTAAAGCT
GTAT-TAAAAGTT-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>SNPs
---S----------------------------------------------S-----------------------------
--------------------------------------------------------------------------------
----------------------------------------S--SSSSSSSSSSSSSSSSSS-------------------
----------------------------------------------------------------------S---------
-----------------S--------------------S-S-S-------------------------------------
---S-S-SS-----------------------------------------------------------------------
------------------------------------S---------------S---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------SS----------
-------------------------------------------------S------------------------------
-----------------------------------------------S-------------------------------S
------------------------------------------S------S------------------S-----------
--------------------------------------------------------------------------------
---------------S------------------------SSS-SSSSSSSS-S-SSSSSSSSSSSSSS------S----
S----S--S------------------------------S----------------------------------------
-----------------S--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------S-
--S----------------S-----------------------------------------------S------------
-----------------------------------------S--------------S--------S--------------
------------------------------------S--S----S---------------------------S--S----
-------------------S------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------S--------------------
--------------------------------------------------------------------------------
---------SS-----------------------------------------------S---------------------
--------S-----------------------------------------------------------------------
-----------------------------------------------------S-----------S-----S--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------S------S-S---SSS
S-S--------------------------S----------S-------------S------------S------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------S---------SSSSSSSSSSS---------------
--------------------------------------------------------S-----------------------
-----S----------------S--------S----------------SSSSS---------------------------
--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------S---------------------------------------------S-------
-S-------S-S-------S---------------SS-S--------S-----S-------------S--------S---
S-----------S-------------------S-------------------S--------S----
>forward_1089
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------CAACCCAGCTGCATCACATG-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>reverse_3230
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------TTCAAGCACCAGCACCTCAA-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
