>input_sequence_65236
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-----------------------------TCTCTCG----ACTGTTCATCTTAAACGTCAGGCAGAGATGATGGCGTCTT
TCTGGCCGCTGTGCGCTCTTGTCGTACTGCTCGCCGCAGTCGGCTCCGTCTCCATCGCATCCGCCTCCGTGGCCGACGCA
GGTAGCTCGTCTCTCAATTCTTCGCTGCTCGCATCGGCGGCTCCTCCGCCAACCGCCGTCCTTCCCCGCAAGGTGCTCCG
CCCTGCAGGTAATTCGCATCCATGTTTCATGCAAAGAAAAAGCATCCGTCTTCTTCTTACCAGTTTCAGTTAT-----GC
TCAGCCTTGTCTCTTTTCTCTGCAATGCAGGCGTGGGCGCAGACGTGCCGCACCGCGTGAGCCTCGGCTGCGCCGGCGCG
GACGACATCGCCATCGAGCAGGGCCCGGGGACGACGCTGCCCAGCGGGGTCCCGTCCTACACGGTGGACATAATCAACCG
CTGCTCCGGCGCAGGCCGCGAAGCGTGCGCCATCTCTGGCATCCGCGTGCGCTGCGGCTGGTTCAGCTCCGTCACCCTCG
TCGACCCCAGCAAGTTCCGCCGGGTGGCGCCCGACGACTGCCTCGTCAACGACGGCAAGCCGCTCTTGGCTGACGACACC
ATCTCCTTCGAGTACGCCAACTCGTTCCAATACAAGCTCTCCGTCGCCAAGGCCACCTGCGTCCACCCCGCCGCCGACAC
CTCCGACTAGCCGTATCGTATGCACGGGCCTAGCTAGCTAGCACTTTC---TTTCGACACTTATTGTAGTATGCACAAGT
TAGTACTTAGTAC------TACTACTATGGACGGACAATATCATCGGACAAAAATATAAGGTGTTTGCATGATTTTATAA
CTATTATAAACACCATCGACATATATCAAAG-TTTTTGATGTGCATTGCATTGTCTCTGATGTATACTGTGCTTGTAATT
AAGTACCTATTCGGCA----------------------------------------------------------------
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>chr2B_1_TraesCS2B01G096400
TTAAACATG-TTATGTATGAAATTTGATTTGAAAAATATGTAGAATATGAATATACAATTATTTTAACATGTACAGTATT
TTTAAATATTATTTT-AGAAGATATTAAAGTCAAACAAATAA-TTTTCTAAATTATCCATATCTTTTAAACCGTAACTCC
GATTTTAAGATGTTATATATGCAATTTGATTAGAAAA-TGTGTCAAATCTGAATATTATGTTAATTTTACCCGTTGATTG
TTTTTT-AAATATTATTTGA-AAGCAAACTTATAATCTATTGCGCACGATCCGTTTTTCTTTCGTACCCGCGGC------
GATTGCACATAAACACCCA-CTATAACCATATAGGAAAAATAAAATATCGATAATTACACATGCATACCTCTGAAAA-CG
TCGCAGGAGAAAACAACAGATTATT-ATGGTGAGG-GTGAGAGAAAGCGAGA------GAGGGAGAGGGAGAGGGAGGAG
AGAGGGAGAGAGCGACGCCTTAGGATTAACCACATTCAAATATGTTTTGGTTTTTGTGAACACTGAGTCCACCGCCGACG
AGGGTGAGAAGGAGGATAAGCCGCAACACAAATATGATGCCTCGCTAAAATAAAGGAGATTGACCTA-TTTGTGATCTTG
AGTGATGATTGTTGGGTTAAGAGTGTGTGTTGTGTTTTTTCTACCGTTGCAACGCACGGGCTCTTTTTCTAGTGAAAAA-
TAAAAAAAAAGGAAAAACTGACAGAACAAAACAAAAAACGATGGAACACGAAAACAAGAAAAAC--TCATCCTGAAAAAC
CGAGGGAACCTCCCAAAACGGGTGCCGGTGCTGGGATATATGTTTCGGAACGGCCCAGTTCGCTATGGAAGGAGTCGAGC
ATGTC-----------------------------------------AACGAGCACCTGCCTAACTACGATCAGTTC--TT
TCCATGTAAAAATCAAGATTACTGCCTTTTTTTACTAGCTGATTAGTTTCCAAGTTGAGCAGACGACCCACCTATATAAG
ACGGATTATTCTGACGAGGATTTCATACTTCTCTCG----ACTGTTCATCTTAAACGTCAGGCAGAGATGATGGCGTCTT
TCTGGCCGCTGTGCGCTCTTGTCGTACTGCTCGCCGCAGTCGGCTCCGTCTCCATCGCATCCGCCTCCGTGGCCGACGCA
GGTAGCTCGTCTCTCAATTCTTCGCTGCTCGCATCGGCGGCTCCTCCGCCAACCGCCGTCCTTCCCCGCAAGGTGCTCCG
CCCTGCAGGTAATTCGCATCCATGTTTCATGCAAAGAAAAAGCATCCGTCTTCTTCTTACCAGTTTCAGTTAT-----GC
TCAGCCTTGTCTCTTTTCTCTGCAATGCAGGCGTGGGCGCAGACGTGCCGCACCGCGTGAGCCTCGGCTGCGCCGGCGCG
GACGACATCGCCATCGAGCAGGGCCCGGGGACGACGCTGCCCAGCGGGGTCCCGTCCTACACGGTGGACATAATCAACCG
CTGCTCCGGCGCAGGCCGCGAAGCGTGCGCCATCTCTGGCATCCGCGTGCGCTGCGGCTGGTTCAGCTCCGTCACCCTCG
TCGACCCCAGCAAGTTCCGCCGGGTGGCGCCCGACGACTGCCTCGTCAACGACGGCAAGCCGCTCTTGGCTGACGACACC
ATCTCCTTCGAGTACGCCAACTCGTTCCAATACAAGCTCTCCGTCGCCAAGGCCACCTGCGTCCACCCCGCCGCCGACAC
CTCCGACTAGCCGTATCGTATGCACGGGCCTAGCTAGCTAGCACTTTC---TTTCGACACTTATTGTAGTATGCACAAGT
TAGTACTTAGTAC------TACTACTATGGACGGACAATATCATCGGACAAAAATATAAGGTGTTTGCATGATTTTATAA
CTATTATAAACACCATCGACATATATCAAAG-TTTTTGATGTGCATTGCATTGTCTCTGATGTATACTGTGCTTGTAATT
AAGTACCTATTCGGCAATCCACCAGCACCGAAAAATACGAGGATCTACGGAGCATCTGTTTCTCCGCTCAGTTATTTTCA
ATTGCAGCTCCACTTGCTATGGGAGCATAGTCGTGGAGCAAAGAGACCTCCGAACAGGCCTCAAGTCTCGGATCAACGAG
AGAAGGGGAACTTGGGGAACTTTTGAGAGGTTGCCTAACTTTGACTCGAGCTAATCGTCATACTTCTAGTGTTTCCCTAC
TAACATAAGACTAAGTCTGAGCTCCAATCCAAAGGCAATTGAACATAATAAT-GAAAACATCAATGTGCCACATTATTCG
TCATGTGCACACGACCTTCCCATGCATAATGTCATGTGCAGGGTTATGTACCACTTTCTAATGTGCACCCGCTTTTCACC
AACACCGATGACAACAACATTTATGTTTAC-CTTTATATCAATTTTACACGTGTTAGCACACTTTATGATACCCCTGTTA
TTTTGAATCATTTTTTTCTGTAT-GGACATCGGGTTTTTAATTTTGTGAATTTCAAGTGTTGTTAACAAATTAAATAATT
ATTTTTTGGGGACATCGATCATCA---AAAGAAAAAATTGGGGGACATCAGCTCTATGATACGAGCGCTCTCATACTGCT
AATAATGGAGGCCCTTGCCATAGAAGATGGTGCCTGACTCGCATTTGCCATCTGAATCGGGTTGGAGGGTGACGCCCTAG
AAATTAAGTTCATGTGCCGAGATATGCTAACGTGCCAAATGGGTTAGTAGCACCTGGAGGAGGTGCCTCATGAAGCGTAA
TTTTGACTATGTAAACATGGCAACTTAGTAGCAAATAAGGAAATAGTTGTGTACCATATTTGTTTTTCTTTCTAACTGAG
ACTTCCATATAAAATATGCATGTCCAAAGTACAATGTGCGTATGGCATACACGTTCTCATCTTATACGTTGACATATATG
TATTTTATTTTCGTTTGCACATGGCATAATTTTTACAAGAATTCTTTTCACGCAACTTAACA
>chr2B_1
TTAAACATG-TTATGTATGAAATTTGATTAGAAAAATATGTAGAATATGAATATACAATTACTTTAACATGTTCAGTATT
TTTAAATATTATTTT-AGAAGATATTAAAGTCAAACAAATAA-TTTTCTAAATTATTCATATCTTTTAAACCGTAACTCC
GATTTTAACATGTTATATATGCAATTTGATTAGAAAA-TGTGTCAAATCTGAATATTATGTTAATTTTACCTGTTGATTA
TTTTTT-AAATATTATTTGA-AAGCAAACTTATAATCTATTGCGCACGATCCGTTTTTCTTTCGTACCCGCGGC------
GATTGCACATAAACACCCA-CTATAACCATATAGGAAAAAGAAAATATCGATAACTACACATGCATACCTCTGAAAA-CA
TCGCAGGAGAAAACAACAGATTATT-ATGGTGAGG-GTGAGAGAAAGCGAGA------GAGAGAGAGGGAGAGGGAGGAG
AGAGGGAGAGAGCGACGCCTTAGGATTAACCACATTCAAATATGTTTTGGTTTTTGTGAACACTGAGTCCACCGCCGGCG
AGGGTGAGAAGGAGGATAAGCCGCAACACAAATATGATGCCTCGCTAAAATAAAGGAGATTGACCTA-TTTGTGATCTTG
AGTGATGATTGTTGGGTTAAGAGTGTGTGTTGTGTTTTTTCTACCGTTGCAACGCACGGGCTCTTTTTCTAGTGAAAAAT
TAAAAAAAAAGGAAAAACTGACAGAACAAAACAAAAAACGATGAAACACGAAAACAAGAAAAAC--TCATCCTGAAAAAC
CGAGGGAACCTCCCAAAACGGGTGCCGGTGCTGGGATATATGTTTCGGAACGGCCCAGTTCGCTATGGAAGGAGTCGAGC
ATGTC-----------------------------------------AACGAGCACCTGCCTAACTACGATCAGTTC--TT
TCCATGTAAAAATCAAGATTACTGCCTTTTTTTACTAGCTGATTAGTTTCCAAGTTGAGCAGACGACCCGCCTATATAAG
ACGGATTATTCTGACGAGGATTTCATACTTCTCTCG----ACTGTTCATCTTAAACGTCAGGCAGAGATGATGGCGTCTT
TCTGGCCGCTGTGCGCTCTTGTCGTACTGCTCGCCGCAGTCGGCTCCGTCTCCATCGCATCCGCCTCCGTGGCCGACGCA
GGTAGCTCGTCTCTCAATTCTTCGCTGCTCGCATCGGCGGCTCCTCCGCCAACCGCCGTCCTTCCCCGCAAGGTGCTCCG
CCCTGCAGGTAATTCGCATCCATGTTTCATGCAAAGAAAAAGCATCCGTCTTCTTCTTACCAGTTTCAGTTAT-----GC
TCAGTCTTGTCTCTTTTCTCTGCAATGCAGGCGTGGGCGCAGACGTGCCGCACCGCGTGAGCCTCGGCTGCGCCGGCGCG
GACGACATCGCCATCGAGCAGGGCCCGGGGACGACGCTGCCCAGCGGGGTCCCGTCCTACACGGTGGACATAATCAACCG
CTGCTCCGGCGCAGGACGCGAAGCGTGCGCCATCTCTGGCATCCGCGTGCGCTGCGGCTGGTTCAGCTCCGTCACCCTCG
TCGACCCCAGCAAGTTCCGCCGGGTGGCGCCCGACGACTGCCTCGTCAACGACGGCAAGCCGCTCTTGGCTGACGACACC
ATCTCCTTCGAGTACGCCAACTCGTTCCAATACAAGCTCTCCGTCGCCAAGGCCACCTGCGTCCACCCCGCCGCCGACAC
CTCCGACTAGCCGTATCGTATGCACGGGCCTAGCTAGCTAGCACTTTC---TTTCGACACTTATTGTAGTATGCACAAGT
TAGTACTTAGTAC------TACTACTATGGACGGACAATATCATCGGACAAAAATATAAGGTGTTTGCATGATTTTATAA
CTATTATAAACACCATCGACATATATCAAAG-TTTTTGATGTGCATTGCATTGTCTCTGATGTATACTGTGCTTGTAATT
AAGTACCTATTCGGCAATCCACCAGCACCAAAAAATACGAGGATCTACGGAGCATCTGTTTCTCCGCTCAGTTATTTTCA
ATTGCAGCTCCACTTGCTCTGGGAGCATAGTCGTGGAGCAAAGAGACCTCCGAACAGGCCCCAAGTCTCGGATCAACGAG
AGAAGGGGAACTTGGGGAACTTTTGAGAGGTTGCTTAACTTTGACTCGAGCTAATCATCATACTTCTAGTGTTTCCCTAC
TAACATAAGACTAAGTCTGAGCTCCAATCCAAAGGCAATTGAACATAATAAATGAAAATATCAATGTGCCACATTATTCG
TCATGTGCACACGACCTTCCCATGCATACTGTCATGTGCAGGGTTATGTACCACTTTCTAATGTGCACCCGCTTTTCACC
AACACCGATGACAACAACATTTATGTTTAC-CTTTATATCAATTTTACACGTGTTAGCACACTTTATGATACCCCTGTTA
TTTTGAATCATTTTTTTTCTGTAGGGACATCGGGTTTTTAATTTTGTGAATTTCAAGTGTTGTTAACAAATTAAATAATT
ATTTTTTGGGGACATCGATCATCAAAAAAAAAAAAAATTGGGGGACATCAGCTCTATGATACGAGCGCTCTCATACTGCT
AATAATGGAGGCCCTTGCCATACAAGATGGTGCCTGACTCGCATTTGCCATCTGAATCGGGTTGGAGGGTGACGCCCTAG
AAATTAAGTTCATGTGCCGAGATATGCTAACGTGCCAAACGGGTTAGTAGCACCTGGAGGAGGTGCCTCATGAAGCGTAA
TTTTGACTATGTAAACATGGCAACTTAGTAGCAAATAAGGAAATAGTTGTGTACCATATTTGTTTTTCTTTCTAACTGAG
ACTTCCATATAAAATATGCATGTCCAAAGTACAATGTGCGTATGGCATACAAGTTCTCATCTTATACGTTGACATATATG
TATTTTATTTTCGTTTGCACATGGCATAATTTTTACTAGAATTCTTTTCACGCAACTTAACA
>chr2B_1
TTAAATATTTTTATATATGAAATTTGATTAGAAAAATATGTAGAATATGAATATGAGATTATTTTATCCTGTTAAGTATT
TCAAAATACCATTTA-AAAAAATATTAAAGTCAAACAAATGA-TTTTCAAAATTATTCGTATCTATT-AACCGTAACTCC
GATTTTAACATGTTATATATGCAATTTGATTAGAAAA-CGTGTGAAATCTGAATATGATGTTAATTTTACCTGTTGATTA
TTTTTT-AAATATTATTTTGGAAGCAAACTTACAATCTATAGCGCACAATCCGTTTTTCTTTCGTACCCGCGACGATTCG
GATTGCAAATGAACACCCA-CTATAACCATATAGGGAAAAGTAAACATCAATAACTACACATGCATACCTCTGAAAA-TG
TCGCAGGACAAAACAACAGATTTATCATGGTGA-G-GTGAGAGAAAGCGAGA------GAGGGAGAGGGAGAGGGAGG--
AGAGGGAGAGAGCGACGCCTTAGGATTAACCACATTCAAACATGTTTTGGTTTGTGTGAACACTGAGTCCACCGCCGGCA
AGGGTGAGAAGAAGGATAAGCGGCAACACAAATATGATGCCTCTTTAAAATAAAGAAAATGAACCTA-TTTGTGGTCTTG
AGTGATGGTTGTTGAGTTAAGAGTGTGT--TGTGCTTTTTCTCCCGTTGCAACGCATGGGCTCTTTTGCTAGT-------
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>chr2B_1
TTAAACATG-TTATATATGAAATTTCATTAGAAAAATATGTAGAATATGAATATAAGATTATTTTAACCTGTTAAGTATT
TATAAATACTATTTT-GGAAGATATTTAAGTCAAACAAATGG-TTTTCTAAATTATACGTATCTTTTAAACCGTAACTCC
GATTTTAACATGTTATATATGAAATTTGATTAAAAAA-TGTGTGAAATCTGAATATGATGTTAATTTTACCTGTTAAATA
TTTTTTTAGATATTGTTTTGGAAGCAAACTTGTAA-ATATAGCGCACGATCCATTTTTCTTTCGTACAGGCGGCGATTCG
GATTGCAAATAAACACCCA-CTATAGTCATATAGGAAAAAGAAAACATCGAGAACTACACATGCATACCTCTGAATA-CA
TTGCAGGGAAAAACAACAGATTTCTCATCGCGA-GTGTGAGAGAAAGC--GAA--AGAGAAAGAGAGGGAGAGGGAGGAG
AGAGGGAGAGAGAGACGTCTTAGGATTAACCACATTCAAACACGTTTTGATTTGTGTGAACACTAAGGCCATCACCGGCG
AGGGTGAGAAGAATGATAAGCGGCAACACAAATATGATGCATCGC-AAAATAAAGAAAATGGACCTA--TTGTGGTCTTG
AGTGATGGTTGTTCAGTTAAAAGTGTGTGTTATGTTTTTTCTCCCGTTGCAACGCACGGGCTCTTTTACTAGT-------
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>chr2B_1
TTAAACATG-TTATATATGAATTTTGATTAGAAAAATATGTAGAATATGAATATAAGATTATTTTAACCTGTTAAGTGTT
TATAAATATTATTTTT-AAAGATATTTAATTCAAACAAATGG-TTTTCTAAATTATACG-ATCTTTTAAACCGTAACTTC
GATTTTAATATGTTATATATGAATATTTTAG-AAAAA-TGTGTGAAATCTGTATATGATGTTAATTTTACCTGTTAAATA
TTTTTT-AAATATTGTTTTGGAAGGAAACTTATAA-CTATAGCACACGATCCATTTTTCTTTCATATAGTCGGCGATCTG
GATTACAAATAAACACCCA-CTATAATCATATAGGGAAAAGAAAACATCGAGAACCACACATGCATAGCTCTGAATA-CA
TCACAGG-GAAAACAACAGATTTCT-ATCGCGA-GTGTGAGAGAAAGC----------GAGAGAGAGGGAGAGGGAGGAC
AGAAGGAGAGAGAGACGTCTTAGGATTAACCACATTCTAACACGTTTTGATTTGTGTGAACACTAAGGCCACCGCCGGCG
AGGGTGGGAAGAAGGATAAGCGGCAACACAAAAATGATGCGTCGCTAAAATAAAGGAGATGTACCTA--TTGTGGTCTTG
AGTGATGGTTGTTCGGTTAAGAGTGTGTGTTGTGTTTTTTCTCCCGTTGCAACGCACGGGCTCTTTTGCTAGTAG---AT
TAAAATACAAGTAAGAACCGACATGACAAAACTGAAAAA-----------------------------------------
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>chr4D_1
TTAAACATG-TTATATATGAAATTTGATTAGAAAAATATGTAGAATATGAATATGAGACTATTTTAACCTGTTAAGTATT
TTTAAATATTATTTT-AAAAGATATTAAAGTCAAACAAATGA-TTTTCTAAATTATCCGTATCTTTTAAACCGTAACTCC
GATTTTAACATGTTATATATGCAATTTGATTAGAAAAACGTGTGAAATCAGAATATGATGTTAATTTTACCTGTTGATTA
TTTTTT-AAATATTATTTTGGAAGCAAACTTATAATCTATAGCGCACGATCCGTTTTTCTTTCGTACCCGCGGCGATTCG
GATTGCAAATAAACACCCA-CTATAACCTTATAGGGAAAAGAAAACATCGATAACTACACATGCATACCTCTGAAAA-CG
TCGCAGGAGAAAACAACAGATTTATCATGGCGA-GTGTGAGAGAAAGC--GA------GAGAGAGAGGGAGAGGGAGGAG
AGAGGGAGAGAGCGACGCCTTAGGATTAACCACATTCAAACATGTTTTGATTTGTGTGAACACTGAGTCCACCGCCGGCT
AGGGTGAGAAGGAGGA--AGCGGCAACACAAATATGATGCCTCGCTAAAATAAAGGAGATGCACCTATTTTGTGGTGTTG
AGTGATGGTTGTTGGGTTAATAGTGTGTGTTGTACGTTTTCTCCGGTTGCAATGCACGGGCTTTTTT-------------
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>chr3D_1
TTAAACATG-TTATATATGAAATTTTATTAGAAAAATATGTAGAATATGAATATGGTATTAATTTAACCTGTTAAGTATT
TTTAAATATTATTTT-AGAAGGTATTAAAGTCAAACAAATGG-TTTTCTAAATTATCCGCATCTTTTAAACCGTAACTCC
GATTTTAACATGTTATATATGCAATTTGATTAGAAAAACGTGTGAAATCTGAATATGATGTTAATTTTACCTGTTAATTA
TATTTT-AAATATTATTTTGGAAGCAAACTTATAATCTATAGCGCACGATCCATTTTTCTTTTGTACCCGCGGCAATTTG
GATTGCAAATAAACACCCA-CTATAACCATATAGGGAAAAGAAATCATCGATAACTACACATGCATACCTCTGAAAA-TG
TCACAGGGGAAAACAACAGATTTATCATGGAGA-GTGTGAGAGAAAGC--GA------GAGAGTGAGGGAGAGGGAGGAT
AGAGGGAGAGAGCGACGCCTTAGGATTAACCACATTCAA-CACGTTTTCGTTTGTGTGAACACTGAGTCCACCGCCGGCG
TGGGTGAGAAGGAGGATAAGCGGCAACACAAATATGATGCCTCGCTAAAATAAAGGAGATGGACCTA-TTTGTGGTCTTG
AGTGATGGTTGTTGGGTTAAGAGTGTGTGTTGTGCTTTTTCTCCCGTTGCAATGCACGGGCTCTTTTTCTAGT-------
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>chr3D_1
TTAAACATG-TTATATATGAAATTTGATTAGAAAAATATGTAGAATACGAATATAAGATTATTTTAACATGTTAAGTATT
TATAAATATTA-TTTTGGAAGATATTTAATTCAAACAAATGGTTTTTCTAAATTATACGTATCTTTTAAACCGTAACTCC
GATTTTAATATGTTATATATGAAATTTGATTAGAAAAATGTGTGAAATTTGTATATGATGTTAATTTTACCTGTTAAATA
TTTTTT-AAATATTGTTTTGGAAGCAAACTTATAA-CTATAGCGCACGATCCATTTTTCTTTTATACAGGCGGCGATCCT
GATTGCAAATAAACACCCA-CTATAATCATATAGGGAAAAGAAAACATCAAAAACTACACATGCATACCTCTGAATA-CG
TCGCAGGGGAAAACAACAGATTTCTCATCGCGA-GTGTGAGGGAAAGC----------GAGAGAGAGGGAGAGGGAGGAG
AGAGGGAGAGAGAGACGTCTTAAGATTAACCACATTCTAACACGTTTTGGTTTGTGTGAACACTAAGGCCACCGTTGGCG
AGGGTGAGAAGAAGGATAAGCGGCAACACAAATATGACGCGTCGCTAAAATAAAGGAGATGGACCTA-TT-GTGGTCTTG
AGTGATGGTTGTTTGGTTAAGAATGTGTGTTGTGTTTTTTCTCCCGTTGCAACGCACGAGCTTCTTTGCTAGTGA-----
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>chr1D_1
TTAAACATG-TTATATATGAAATTTGATTAGAAAAATATGTAGAATACGAATATGAGATTATTTTAACATGTTAAGTATT
TTTGAATATTA-TTT-AGAAGATATTAAATTCAAACAAATGG-TTTTCTAAATTATCCGTATCTTTTATACCGTAACTCC
GATTTTAACATGTTATATATGCAATTTGATTAGAAAAACGTGTGAAATCTAAATATGATGTTAATTTTACCTGTTGATTA
TTTCTT-AAATATTATTTTGGAAGCAAACTTATAATCTATAGCGCACGATCCATTTTTCTTTCGTACCCGCGGCGATTCA
GATTGCAAATAAATACCCA-CTATAACCATATAGGGAAAAGAAAACATCGATAACTACACATGCATACCTCTGAAAA-CG
TCGGAGGGGAAAACAATAGATTTATCATGGTGA-GTGTGAAAGAAAGCGAGG------GAGAGAGG----GAGGGAGGAG
AGAGGGAGAGAACGACGCCTTAGGATTAACCACATTCAAACTTGTTTTAATTCATGTGAACACTGAGTCCACCGCCGGCG
AGGGTGAGAAGGAGGATAAGCGGCAACACAAATATGATGGCTCGCTAAAATAAAGGAGATGGAGCTA-TTTGTGGTCTTG
AGTGATGGTTGTTTGGTTAAGAGTGTGTGTTGTGCTTTTTCTCCCGTTGCAACGCACGGGCTCTTTTGCTAGT-------
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>chr6B_4
---AACATG-TTATATACGAAATTTGATTAGAAAACTGTGTAAAACATGAATATGAGATTAATTTTAACTGTTAAGTATT
T-TAAATATTA-TTTTGGAAGATATTTAAGTCAAACAAATGA-TTTTCTAAATTACCCGTATCTTTTAGACCGTAACTCC
GATTTTAACATGTTATATATGAAATTTGATTAGAAAAATATGTGGAATCTGAATATGATGTTAATTTCACCTGTTAAATA
TTTTTT-AAATATTGTTTTGGAAGCAAACTTATAATTTATAGTGCACGATCCATTTTTCTTTCGTACCGGCGGCGATCCG
GATTGCAAATAAACACCCAACTATAACCATATAGGAAAAAAAAAACATCGATAACAACACATGCATACCTCTGAAAAACG
TCCCAGGGGAAAACAATAGATTTCTCATCACGA-GAGTGAGAGAAAGC--GAGAGAGAAAGAGAGAGGGACAGGGAGGAG
AGAGGGAGAGAGA--CGCCTTAGGATTTAGCATATTCAAACACGTTTTGTTTTGTGTGAACACTTAGGCCATCGCCGGCG
AGGGTGAGAAGGAGGATAAGCGGCAACACAAATATGATGCCTCGCTAAAATAAAGAAGATGGACCTA-TT-GTGGTCTTG
AGTGATGGTTGTTGGGTTAAGAGCGTGCGTTATGTTTTTTCTTCCGTTGCAACGCATGGGCTCTTTTGCTAGT-------
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>chr1D_10
----------TTATATATGAAATTTGATTAGAAAAATATGTATAATATGAATATAAGATTATTTTAACCTGTTAAGTATT
TATAAATATTA-TTTTGGAAGATATTTAAGTCAAACAAATGG-TTTTGTAAATTATACGTATCTTTTAAACCGTAACTCC
GATTTTAACATGTTATATATAAAATTTGATTAGAAAAATGTGTGAAATTTGAATATGATGTTAATTTTACCTGTTAAATA
TTTTTT-AGATATTGTTTTGGAAGCAAACTTATAA-CTATAGCGCATGATCCATTTTTCTTTCGTACAGACGGCGATCTG
GGTTGCAAATAAACACCCA-CTATAGTCATATAGGAAAAAGAAAACATCAAGAACTACACATGCATACCTATGAATA-CA
TCGCAGGGGAAAACAACAGATTTCTCATCGCGA-GTGTGAGAGAAAGCGAGA------GAGAGAGAGGGGGGGAGAGG--
GAGGAGAGAGAGAGACGTCTTAGGATTAACCACATTCAAACATGTTTTGGTTTGTGTGAACACTAAGGCCATCGCCGGCC
AGGGTGAGAAGAAGGATAAGAGGCAACACAAATATGATGCGTCGCTAAAATAAAGGAGATGGACCTA-TT-GTGGTCTTG
AGTGATGGTTGTTCGGTTAAGAGTGTGTGTTGTGTTTTTTCTCCCGTTGCAACGCACGGTCTCTTTTCCTAGT-------
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>chrUn_387
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TCGCAGGAGAAAACAACAGA-TTATTATGGTGA-GGGTGAGAGAAAGCGAGA------GAGAGAGAGGGAGAGGGAGGAG
AGAGGGAGAGAGCGACGCCTTAGGATTAACCACATTCAAATATGTTTTGGTTTTTGTGAACACTGAGTCCACCGCCGGCG
AGGGTGAGAAGGAGGATAAGCCGCAACACAAATATGATGCCTCGCTAAAATAAAGGAGATTGACCTA-TTTGTGATCTTG
AGTGATGATTGTTGGGTTAAGAGTGTGTGTTGTGTTTTTTCTACCGTTGCAACGCACGGGCTCTTTTTCTAGTGAAAAAT
TAAAAAAAAAGGAAAAACTGACAGAACAAAACAAAAAACGATGAAACACGAAAACAAGAAAAAC--TCATCCTGAAAAAC
CGAGGGAACCTCCCAAAACGGGTGCCGGTGCTGGGATATATGTTTCGGAACGGCCCAGTTCGCTATGGAAGGAGTCGAGC
ATGTC-----------------------------------------AACGAGCACCTGCCTAACTACGATCAGTTC--TT
TCCATGTAAAAATCAAGATTACTGCCTTTTTTTACTAGCTGATTAGTTTCCAAGTTGAGCAGACGACCCGCCTATATAAG
ACGGATTATTCTGACGAGGATTTCATACTTCTCTCG----ACTGTTCATCTTAAACGTCAGGCAGAGATGATGGCGTCTT
TCTGGCCGCTGTGCGCTCTTGTCGTACTGCTCGCCGCAGTCGGCTCCGTCTCCATCGCATCCGCCTCCGTGGCCGACGCA
GGTAGCTCGTCTCTCAATTCTTCGCTGCTCGCATCGGCGGCTCCTCCGCCAACCGCCGTCCTTCCCCGCAAGGTGCTCCG
CCCTGCAGGTAATTCGCATCCATGTTTCATGCAAAGAAAAAGCATCCGTCTTCTTCTTACCAGTTTCAGTTAT-----GC
TCAG----------------------------------------------------------------------------
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>chr2D_690
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------------------------------------------------------------------------TGAAAAAT
--AAAAAAAAGGAAAAACTGACAGAACCAAACAAAAAGCGATGAAACACGAAAACCAGAAAAAAATCCATCATGAAAAAC
CTAGGGAACCTCCCAAAACCGGTGC-GGTGCTGGGATATATGTTTC--------------------GGAAGGAATCGAGC
ATGTCGCGCCAGGAACGGGCGCCTTAAGCTAAATAGGAATCGGCCTAACGAGCACTTGCCTAACTAGGATCAGTTCTTTT
TCCATGTAAAAATCAAGATTACTACCTTTTTT-ACTAGCTGATTGGTTTCCAAGTTGAGCAGACGATCCACCTATGTAAG
ACGGATTATTCTGACGGGGATTTCATACTTCTCTCGACGTACTGTTCATCTTAAACGTCAGGCAGAGATGATGGCGTCTT
TCTCGCCGCTGTGCGCTCTTGTCATGCTGCTCGCCGCGGTCGGCTCCGTCTCCCTCGCATCCGCCTCCGTCGCCGACGCA
GGTAGCTTGTCTCTCAATTCTTCGCTGCTCGCATCGGCGGCTCCTCCGCCAAGCGCCGTCCTTCCCCGGAAGGTGCTTCG
CCCTGCAGGTAATCCATGAC-----TTCATGCAAAGAAAAAGCATCCGTCTTCTTCTTACGAGTTTCAGTTAT-----GC
TCAGCCTTGTCTCTTTTCTCTGC-ATGCAGCCGTGGGCGCCGACGTGCCGCACCGCGTGAGCCTCGGCTGCGCCGGCGCG
GACGACATCGCCATCGAGCAGGGCCCGGGGACGACGCTGCCCAGCGGGATCCCGTCCTACACGGTGGACATAATCAACCG
CTGCTCCGGCGCAGGCCGCGCCGCCTGCGCCATCTCCGGCATCCGCGTGCGCTGCGGGTGGTTCAGCTCCGTCACCCTCG
TCGACCCCAGCAAGTTCCGGCGGGTGGCGCCCGACGACTGCCTCGTCAACGACGGCAAGCCGCTCTTGGCTGACGACACC
ATCTCCTTCGAGTACGCCAACTCGTTCCAATACAAGCTCTACGTCGCCAAGGCCACCTGCGTCCACCCCGCCGCGGATAC
CTCCGACTAGTCGTATCGTATGCAC-GGCCTAGCTAGCTAGCACTTTC---TTTCGACACGTATTGTAGTATGCAGAAGT
TA----------------TTAGTAGTATGGACGGACAATATCATCGGACAAAAATATAAGGTGTTTGCATGATTTT--TA
CTATTATAAACACGATCGACATATATCAATTTTTTTTGATGTGCATTACATTGTCTCTGATGTGTACTGTGCTTGTAATT
AAGTACCTATTCGGCAATCCACCAGCACCGAGAAATACGATGATCCGCGGAGCATCTGTTTCTCTGCTTAGTTATTTTCA
ACTGCAGCTCCACTTGCTCCGGGAGCATAGTCGTGGAGCAGAGAGACCTCCGAACAGGCCCCAAGTCTCGGATCAACGAG
AGAAGGGGAACTTGGGGAACTTTTGAGAGGTCGCTTAACTTTGACTCGAGCTAATCGTCATACTTCTCATGTTCCCCTAC
TAACATAAGACTAAGTCTGATCTCCAATCCAATGGCAATTGAACCTAATAATTGAAAACATCAATGTGCCACATTATTCG
TCATGTGCACACGACCTTCGCATGCATAATGTTATGTGCAGGGTTATGTACCACTTTCTAACATGCACCCGCTTTTCACC
GACACCGATGACAACAACATTTATTTTTAAACTTTATATCAATTTTACACGTGTTAGCACACTTTATGATACCCCTGTTA
TTTTGAATCATTTTTTTCTGTG-GGGACATCGGGTTTTTAATTTTGTGAATTTCAAGTGTTGTTAACAAATTAAATAATT
ATTTTTTGGGGACATCGATCCTC-AAACATAAAAAATTTGCGGGACATCAGCTCTATGATACGAGCGCTCTCATACTGCT
AATAATGGAGGCCCTTGCCATAGAAGATGGTGCCTGACTCGCATTTGCCATCTGAATCGTGTTGGAGGGTGACGCCCTAG
AAATTAAGTTCATGTGCCGAGATATGCTAACGTGCCAAACGGGTTAGTAGCACCTGGAGGAGGTGCCTCATGAAGCGTAA
TTTTGACTATGTAAACAAGGCAACTTAGTAGCAAATAAGGAAATAGTTGTGTACCATATTTGTATTTCTTTCTAATTGAG
ACTTCCATATAAAATATGCATGTCCAAAGTACAACGTGCGTATGACATACAAGTTCTCATCTTATACGTTGAA----ATA
TATTTTATTTTCGTTTGTACATGGCATAATTTTTACAAGAATTCTTTTCACGCAACTTAACA
>chr2A_690
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------------------------------------------------------------------------TGAAAAAT
--GGAAAAAAGTGAAAACTGACGGAACCGAACAAAAAACGATGAAACACGAAAAACAGAAGAAC--CCATCCTGAAAAAC
CGAGGGAACCTCCCAAAACCGGTGCCGGTGCTGG-ATATACGTTTC--------------------GGAAGGAATCGAGC
ATGTCGCGCCAGGAACGGGCGCCTTAAGCTAAATAGGAATCGGCCTAACAAGCACTTGCC-------------------T
TCCATGTAAAAATCAAGATTACTACCTTTTTAC-CTAGCTGATTAGTTTCCAAGTTGAGCAGACGACCCACCTATATAAG
GCGGATTATTCTGACGGGGATTTCATACTTCTTTTG----ACTGTTCATCTTAAACGTCAGGCAGAGATGATGGCGTCTT
TCTCGGCGCTGTGCGCTCTTGTCATACTCCTCGCCGCGGCCGGCTCCGTCTCCATCGCATCCGCCTCCGTCGCCGACGCA
GGTAGCTTGTCTCTCAATTCTTCGCTGCTCGCATCGGCGGCTCCTCCGCCAAGCTCCGTCCTTCCCCGCAAGGTGCTCCG
CCCTGCAGGTAATTCGCATCGATATTCCATGCAAAGAAAAAGCATCCCTCTTCTTCGCGCGAGTTTCAATTATGCCTCGC
TCAGCACTGTCTCTTTTCT--GC-ATGCAGGCGTGGGCGCCAACGTGCCGCACCGCGTGAGCCTAGGCTGCGCCGGCGCG
GACGACATCGCCATCGAGCAGGGCCCGGGGACGACGCTGCCCAGCGGGATCCCGTCCTACACGGTGGAAATAATCAACCG
GTGCTCCGGCGCAGGCCGCGCCGCCTGCGCCATCTCTGGCATCCGCGTGCGCTGCGGCTGGTTCAGCTCCGTCACCCTCG
TCGACCCCAGCAAGTTCCGCCGGGTGGCGCCCAACGACTGCCTCGTCAACGACGGCAAGCCGCTCTTGGCTGACGACACC
ATCTCGTTCGAGTACGCCAACTCGTTCGAATACAAGCTCTCCGTCGCCAAGGCCACCTGCGTCCACCCGCCCGCCGACAC
CTCCGACTAGTCC-----TATGCAC-GGCCTAGCTAGCTAGCACTTTCGAGTTTCGACGCTTACCGTAGTATGCAGAAGT
TCTTATTGTATGCAGAAGTTAGTAGTATGGAAGAACAATATCATCGGACAAAAATATAAGGTGTTTGCATGATTTTTATA
CTATTATAAACAC-------------------------------------------------------------------
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>chrUn_1288
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-----CTTGTCTCTTTTCTCTGCAATGCAGGCGTGGGCGCAGACGTGCCGCACCGCGTGAGCCTCGGCTGCGCCGGCGCG
GACGACATCGCCATCGAGCAGGGCCCGGGGACGACGCTGCCCAGCGGGGTCCCGTCCTACACGGTGGACATAATCAACCG
CTGCTCCGGCGCAGGACGCGAAGCGTGCGCCATCTCTGGCATCCGCGTGCGCTGCGGCTGGTTCAGCTCCGTCACCCTCG
TCGACCCCAGCAAGTTCCGCCGGGTGGCGCCCGACGACTGCCTCGTCAACGACGGCAAGCCGCTCTTGGCTGACGACACC
ATCTCCTTCGAGTACGCCAACTCGTTCCAATACAAGCTCTCCGTCGCCAAGGCCACCTGCGTCCACCCCGCCGCCGACAC
CTCCGACTAGCCGTATCGTATGCACGGGCCTAGCTAGCTAGCACTTTC---TTTCGACACTTATTGTAGTATGCACAAGT
TAGTACTTAGTAC------TACTACTATGGACGGACAATATCATCGGACAAAAATATAAGGTGTTTGCATGATTTTATAA
CTATTATAAACACCATCGACATATATCAAAG-TTTTTGATGTGCATTGCATTGTCTCTGATGTATACTGTGCTTGTAATT
AAGTACCTATTCGGCAATCCACCAGCACCAAAAAATACGAGGATCTACGGAGCATCTGTTTCTCCGCTCAGTTATTTTCA
ATTGCAGCTCCACTTGCTCTGGGAGCATAGTCGTGGAGCAAAGAGACCTCCGAACAGGCCCCAAGTCTCGGATCAACGAG
AGAAGGGGAACTTGGGGAACTTTTGAGAGGTTGCTTAACTTTGACTCGAGCTAATCATCATACTTCTAGTGTTTCCCTAC
TAACATAAGACTAAGTCTGAGCTCCAATCCAAAGGCAATTGAACATAATAAATGAAAATATCAATGTGCCACATTATTCG
TCATGTGCACACGACCTTCCCATGCATACTGTCATGTGCAGGGTTATGTACCACTTTCTAATGTGCACCCGCTTTTCACC
AACACCGATGACAACAACATTTATGTTTAC-CTTTATATCAATTTTACACGTGTTAGCACACTTTATGATACCCCTGTTA
TTTTGAATCATTTTTTTTCTGTAGGGACATCGGGTTTTTAATTTTGTGAATTTCAAGTGTTGTTAACAAATTAAATAATT
ATTTTTTGGGGACATCGATCATCAAAAAAAAAAAAAATTGGGGGACATCAGCTCTATGATACGAGCGCTCTCATACTGCT
AATAATGGAGGCCCTTGCCATACAAGATGGTGCCTGACTCGCATTTGCCATCTGAATCGGGTTGGAGGGTGACGCCCTAG
AAATTAAGTTCATGTGCCGAGATATGCTAACGTGCCAAACGGGTTAGTAGCACCTGGAGGAGGTGCCTCATGAAGCGTAA
TTTTGACTATGTAAACATGGCAACTTAGTAGCAAATAAGGAAATAGTTGTGTACCATATTTGTTTTTCTTTCTAACTGAG
ACTTCCATATAAAATATGCATGTCCAAAGTACAATGTGCGTATGGCATACAAGTTCTCATCTTATACGTTGACATATATG
TATTTTATTTTCGTTTGCACATGGCATAATTTTTACTAGAATTCTTTTCACGCAACTTAACA
>SNPs
-----------------------------S------------------------------------------S-------
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--------S--------------------------------------------------------------S-------S
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----------------------------------------S-------------S-------------------------
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-------------------------------------------S------------------------------------
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------------------S-----------------------------------------S-------------------
----------------------------------S---------------------------------------------
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---------------------SS---------------------------------------------------------
------------------------------S-------------------------------------------------
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---------------------------------------S----------------------------------------
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---------------------------------------------------S----------------------------
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>forward_558
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------------------------------------------------------------CACTGAGTCCACCGCCGA--
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>reverse_2099
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------------------ATGGGAGCATAGTCGTGGAG------------------------------------------
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