>input_sequence_65235
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---------------------------------------------------------------------ATGGGGCGCAC
CAACAAGTCCTCCCTCGCGCTGGCGTGCCTGCTCGCCCTGCTGCTAGTGCAGCTACCCCGAGGAGCCCGTGCAGAC---G
GGGATCTGTGCGGCAAGGTGAAGTGCAGCATGGGGAGCTGCGGCGAGTCCGGCGACTACATGTTCGGGTTCGCCTGCCGC
TGCAACCCGGGGTGGAGACGGTACCATCTCGGCGACGTGGACTTCCCCTTCCTCCCCTGCGTCATACCAAACTGTACGTA
CACCCTGCACGCCAATTTTCTTGATGATGGACCAATAAGAATCGACCACCGTAATTTCTCTGGGCAGGCACCATCAACTA
CTCGTGCCAGGACGGGCCGTCTCCTCCGGCTCCGGCACCGCCGCCGCCAGCAGCGCCACCGCTGACAAACCTCTCAGTCT
ACGACCGTAATTAATCACCACCTCAGATGATCGCGAAAGAGTTTCTGTTTATC-------CATTCAAGCATTCGTCACTG
AGTCCTG---CCTTCCAATGGCGCAGCTTGCTTGATGCAGTACTGCGGGGGCGGCACCTGCGAGAAGGTGGAGTCCTCGG
CGTTCGCGCACAGGTGCGCCTGCCCCGACGGCTTCAAGAACCTCCTCGACGACGCCGCCTACCCCTGCTACCGCCAGTGT
GAGTGACTCAACAACATGTCGTGACTGAGGTATGAGTATGAGTATGACTAGGCTAACGCTGCCTCGCCGGCGGTTTGGTG
TTTCCACCGTGCAGGCTCCCTGGGATCAGGCTGCTCCGACCTCGGGATCGGCATACTCAACGGGTCCGACCCGAGCACGT
CGCCGCCAGCACCCGTCTCCTTCACCGTCCAGAAGAGCGGCGCTGCAGGCGGTTCAGCACCACCGGCGCACGGGCTGCTG
GGGCTCCTCATACTGATTTCCTTCTTCTGGGCCCACAGTTTTGTGAA-TTAG----------------------------
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>chr7D_1_TraesCS7D01G339700
TATTTTTAAAGTACGAGACAAAATAAAATAAATCCTACACTATCCTAGTATTTGCTAACTAATCACGATACTTTAACGAG
TCCGAACGTGTACATGAATGCAGGCCAAACATGTATCTACTGGTGAGTGGCAACTCACCGAATCTGCCATCGCAAAAACC
CCTCAAAAAAATCTCAACGAATCTGCAAGTTTCTAGATTAAAGAGCATCATTTCTGCATGCACGACATCAACCATTAAGA
GTCAAGAAACTATGCAAACCAATGTGGTTGGATGGTTAGAGTGATTGTGGTATTTCCAGTCCATCAATGTTCTAGTTCTG
ATGCTTGCATTATTTCTAAATTTATTTCAGGATTTTCGGCGATGTGCTTTTAGTGAGAGGAGACGTTTCCGTCGACGATG
AGGCGCCTACGATGACTTCATAAATCTAAAAATGATATGCCAGCTCAGTTTCTCAAAGGTGCTCATAGAGGTAGGGTGTG
CATGTATGCGTTCATAGGAATGGGTGTATGTGTGTATATATAAGCGCTTGCGTCTGTACTCTTTTTAAACAAAGAGTGAA
GAAATTATTAACCGGGGCGCTGTCCATTCACGATCAAATTGGAGTATTAAGAAAGAAAAGTTCAGCTCTTCTCGACCAAC
GGCGGCGTCCATTCGCTATCAACGAAAGTTCAGCCCTTCTCGATCAACTGAAGAAACGAACCTGAGGTCTCGCCGTCTCG
GCCTGCAAATAGTCCATGTTCTGGAAGAGATGACGAGCCTGGACCAGCGACCTTCCTGGGCAGGCCGAGGTCGTC-----
----GATCGATCTCACGTCAAATCTGACTGCTTATGTTACTCCACGCGGGTGCATGCCAAATTAATGGTTCGTCCGGCGG
CTATGGGTCACTAGTTAATT-------AGC--------ATAAGTTCGTCTCCCTCGTCGTCCTCGTACACCACCAAACTC
CATCCGAGCACAAGAAGAAATCAAATCACACGTACGTACAGCTCGATCCGGCCGGGG-----CGGCGAAATGGGGCGCAC
CAACAAGTCCTCCCTCGCGCTGGCGTGCCTGCTCGCCCTGCTGCTAGTGCAGCTACCCCGAGGAGCCCGTGCAGAC---G
GGGATCTGTGCGGCAAGGTGAAGTGCAGCATGGGGAGCTGCGGCGAGTCCGGCGACTACATGTTCGGGTTCGCCTGCCGC
TGCAACCCGGGGTGGAGACGGTACCATCTCGGCGACGTGGACTTCCCCTTCCTCCCCTGCGTCATACCAAACTGTACGTA
CACCCTGCACGCCAATTTTCTTGATGATGGACCAATAAGAATCGACCACCGTAATTTCTCTGGGCAGGCACCATCAACTA
CTCGTGCCAGGACGGGCCGTCTCCTCCGGCTCCGGCACCGCCGCCGCCAGCAGCGCCACCGCTGACAAACCTCTCAGTCT
ACGACCGTAATTAATCACCACCTCAGATGATCGCGAAAGAGTTTCTGTTTATC-------CATTCAAGCATTCGTCACTG
AGTCCTG---CCTTCCAATGGCGCAGCTTGCTTGATGCAGTACTGCGGGGGCGGCACCTGCGAGAAGGTGGAGTCCTCGG
CGTTCGCGCACAGGTGCGCCTGCCCCGACGGCTTCAAGAACCTCCTCGACGACGCCGCCTACCCCTGCTACCGCCAGTGT
GAGTGACTCAACAACATGTCGTGACTGAGGTATGAGTATGAGTATGACTAGGCTAACGCTGCCTCGCCGGCGGTTTGGTG
TTTCCACCGTGCAGGCTCCCTGGGATCAGGCTGCTCCGACCTCGGGATCGGCATACTCAACGGGTCCGACCCGAGCACGT
CGCCGCCAGCACCCGTCTCCTTCACCGTCCAGAAGAGCGGCGCTGCAGGCGGTTCAGCACCACCGGCGCACGGGCTGCTG
GGGCTCCTCATACTGATTTCCTTCTTCTGGGCCCACAGTTTTGTGAA-TTAGTGATAG--------TAAACCAAGTGTGT
GGCGTTTTTCTTTTGCGTGGAAATTAAAAAAAATGCATGGCAAGTGTGTGGCGTTTGATTGGGAACCATATTGTCCCACT
TTTCGTATAGGACGAGTATACATTTTGTTTCGGTGATCGCAGAAATAAAATCTAATAAAACAGAACGAGATGGACTTTCA
GCTATCGGGTGCAGGGGCACCCTCATGAACCGTAAATTCAAAACAATAAGAATTTACAGCCGAATAATAGCAATATCGAT
TGGTCTTGGGTGACGATGTTTAACAACGCTATTGCCGCGATGGCGCTTAGGGAAGTGGCTAGGACAGGCGCTAGATACAC
TTGGACTAAC-AAGTAATTAGCCCCGGTGAGTAGCGTGTTAGATAGGGTTTTCATCTTGTCGGACTGGGAAGTCCTCTTC
CCCTTATGCATGCTTACGGCCGAAACGCGCATCGGTTCTGATCACGTTTCGCTTATCCTAGCCTATGGGGAAGATAGGAT
TAAGCGTAGCCCTCGTTTCTACTTCAAAACGGGCTGGTTTGAAACCGAGGGCTTTATTTCTATGGTTATCGCCCGCTGGT
AGCTAGCGATCGCCTCGGTGGGAAGACAGCGCGGCCCCTTGGACCTCTGGATTGCGGTGGCAGGTGCGCTGCGATCTTTT
CTTCGTGGATGAGGCGCCAACCATGGCAGCGAGGCGAAACAGGCTAGGGAAGCCC-----------------------TT
ATTGAGGAAACCAAGCTTCTGGACGTCCTTGCCGACTTGAGAGCGTTTTCGGAGGCGGAATGGGCTAACCGCTACGCCCT
CGAAAACCAGGTGCTCTCCATTCTTAGGGAAGAAGAGGAGTACTAGTGTCGTAGGGGCGGTGTCAAGTGGGTCAAGAAGG
GCGATGTTAACACGGGCTATTTTCACGCGTATGCTAATGGCCGCAAGCGCAAACGCTCGATCCTTAGGCTACAATCTGAC
CAAGGAGTGTTAGTACGTCAAGACGAGATCTCGGCCCACATTTA
>chr7B_552
AAGAGCA-------------------------------------------------------------------------
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------------------------------------------------------------------------------AA
GAAATTATTAACCGGGGCGCCGTCCATTCACGATCAAATTAT-------TAAG---AAAGTTCAGCTCTTCTCGACCGAT
GGCGGTGTCCATTCGCTATCAACGAAAGTTCAGCCCTTCTCGATCAACCGAAGAAAGGAACCCCAGGTCTCGCCGTCTCG
G-CTGCAAATAGTCCATGTTCTGGAACAGATGACGAGCCTGGACCAGCGACCTTCCTGGGCAGGCCGTGGTCGTCGTCAA
GTCTGATCGATCTCACGTCAAATCTGACTGCTTCTATTCTTCCACGCGGGTGCATGCCACATTAATGGTCCGTCCGGCGG
CTATGGGTCACTAGTTAATT-------AGCTTCCATACATAAGTTCGTGTCCCTCATCGTCCTCGTG---CACCAAGCTC
GATCCGGGCACAAGACGAAA-----CCACACGTACGTACAGCTCGATCCGGCCGGGCCGGGACGGCGAAATGGGTCGTAC
CAACAGGTCGGCCCTCGCGCTGGCGTGCCTGCTGGCCCTGCTGCTAGTGCAGCTACCTCGAGGAGCCCGTGCAGTAGATG
GGGATCTGTGCGGCAAGGTGAAGTGCGGCATGGGGAGCTGCGGCGAGTCTGGCGACTACATGTTCGGGTTCGCGTGCCGC
TGCAACCCGGGGTGGAGCCGGTACCATCTCGGCGACGTGGACTTCCCCTTCCTCCCCTGCGCCATACCAAACTGTACGTA
CACCCTGCACGCCAGTTTTCTTGATGATGGATCAATAAGAATCGACCGCCGTAATTCGTCTGGGCAGGCACCATCAACTA
CTCGTGCCAGGACGGCTCGTCTCCTCCGGCTCCGTCACCGCCGCCGCCAGCAGCGCCACCGCTGACAAACCTCTCAGTCT
ACGACCGTAATTAATCACCACCTCAGATGATCGCGAAAGAGTTTCTGTTTATC-------CATTCAAGCATTCGCCACTG
AGTCCTG---CCTTCCAATGGCGCAGCTTGCTTGATGCAGTACTGCGGGGGCGGCACCTGCGAGAAGGTGGAGTCCTCGG
CGTTCGCGCACAGGTGCGCCTGCCCCGACGGCTTCAGGAACCTCCTCGACGACGACGCCTACCCCTGCTACCGCCAGTGT
GAGTGACTCAACAGCATGTCGTGACTGAGGTATGAGTATGAGTATGACTAGGCTAACGCTGCCTCGCCGGCGGTTTGGTG
TTTCCACCGTGCAGGTTCTCTGGGATCAGGCTGCTCAGACCTCGGGATCGGCATAATCAACGGGTCCGACCCGAGCACGT
CGCCGCCAGCACCCGTCTCCTTCACCGTCCAGAAGAGCGGCGCTGCAGGCGGTTCAGCACCACCGGCGCACGGGCTGCTG
GGGCTCCTCATACTGATTACCTTCTTCTGGGTCCAGAGTCCAGACAGTTTTGTGAAAG--------TAAACCAAGTGTGT
GGCGTTT-------------------------------------------------------------------------
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>chr7A_576
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---------------GGCGCCGTCCATTCACGATGAAATTAGAGTAGAGTAAG---AAAGTTCATCTCTTCTCGACCAAC
GGATGCGTCCACTCGCTATCAAGGAAAGTTCAGCCCTTCTCGATCAACTGAAGAAAATAACCTCAGGTCTCGCCGTTCCG
GCCTGCAAATAGTCTATGTTCTGGAAGAGATGACAAGCCTAGACCAGCGACCTTCCTGGGCAGGCCGAGGTCGTCG----
-----ATCGATCTCACGTCAAATCTGACTGCTTCCGTTCCTCCACGCGAGTGCATGCCAAATTAATGGCCCGTCCGGCGG
CTATGACTTACTAGTACTAGTTAAATGAGCTTCCATACATAAGTTCGTCTCCCTCGTCGTCCTCGTA---CACCAAACTC
GATCCGTGCACAAGAAGAAA-----TCACACGCACGTACAGCTCGATCCGGCCAGTCCGGGACGGCGAAATGGGGCGTAC
CAACAGGCCGGCCCTCGCACTGGCGTGCCTGCTCGCCCTGCTGCTAGTGCAGCTGCCTCGAGGAGCCCGTGCAGC---TG
GGGATCTGTGCGGCAAGGTGAAGTGCAGCATGGGGAGCTGCGGCGAGTCCGGCGACTACATGTTCGGGTTCGCGTGCCGC
TGCAATCCTGGCTGGAGCCGGTACCATCTCGGCGACGTGGACTTCCCCTTCCTCCCCTGCGTCATGCCAAACTGTACGTA
CACCCTGCCCGCCAGGTTTTTTGATGATGG--------------------------------------------------
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>chr7A_1277
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----------------------------GGATCAATAAGAATCGACCACCGTAATTTGTCTGGGCAGGCACCATCAACTA
CTCGTGCCAGGACGGGTCGTCTCCTCCGGCTCCGGCACCGCCGCCGCCAGCAGCGCCACCGCTGACAAACCTCTCAGTCT
ACGACCGTAATCAATCACATCCTCAGATGATCGCAAAAGAGTTTCTGTTTACAGTTTACTCATTCAAGCATTCGTCACTG
AATCCTAGTACCTTCCAATGGCGCAGCCTGCTTGATGCCGTACTGCGGGGGCGGCACCTGCGAGAAGGTGGAGTCCTCGG
CGTTCGCGCACAGGTGCGCCTGCCCCGACGGCTTCAGGAACCTCCTCGACGACGACGCCTACCCCTGCTACCGCCAGTGT
GAGTGACTCGGCAACCTGTCGTGACCGAGGTAGTATGACTACT-TGACTAGGCTAACGCTGCCTCGCCGGCGGTTTGGTG
TTTCCACCGTGCAGGTTCTCTGGGATCAGGCTGCTCCGACCTCGGGATCGGCATACTCAACGGCTCCGACCCGAGCACGT
CACCGCCAGCACCCGTCTCCTTCACCGTCCAGAAGGGCGGCGCTGCAGGCGGTTTAGCACCACCGGCGCACTGGCTGCTG
GGGCTCCTGATAGTGATTTCCTTCTTCTGGGTCCAGAGTCCAAACTGTTTTGTGAATTAGTGATTTTAAACCAAGGGTGT
GGCGTTT-------------------------------------------------------------------------
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>chr4A_2171
GAAC----------------------------------------------------------------------------
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-----------------------------------------------------------------AATAGCAATATTGAT
TGGCCTCGGGTCATGATGTTTAACAACACCACTGCCGTGATGGCGCTTAGGGAAGTGGCTAGGACAGGCGCTAGATACAC
TTGGACTAAC-AAGCAATTAGCCCCGGTGCGTAGTATGTTAGATCGGGTTTTCATCTCGTCGGACTGGGAAGTTCTCTTC
CCCTTATGCATGCTTACGGCCGAAACGCGCATCGGTTCTGATCACGTCCCGCTTATCCTAGCCTCTGGGGAAGATAGGAT
TAAGCGTAGCCCTCATTTCTACTTCGAAACGGGTTGGTTTTAAGCCGAGGGCTTTATTCCTATGGTTATCGCCCACTGGG
AGCAAGCGATCGCCTTGGGGGGGG---AGCGTGGCCCCTTGGACCACTGGATTGCGGTGTCAGGTACACTGTGATCTTTT
CTCCGTGGATGGGGTGCCAACCACGGCAGCGAGGCGAAACGGGCTAGGGAAGCCC-----------------------TT
ATTGAGGAAATCAAACTCCTCGATGACCTAGCCGACTCGAGAGCGTTTTCTAAGGCGGAATGGGTTAACCATTACGCCCT
CGAAAACCAGGTGCTCTCCATCCTTAGGGAAGAAGAGGAGTACTGGCGCCGTAGGGGCGGTGTCAAGTGGGTCACGAAGG
GCGATGCTAACACGGGCTATTTCCACGCGTATGCTAATGGCCGCAAGCGCAAATGCTCGATCCTTAGGCTTCAATCTGAT
CAAGGAGTGTTAGTTCGTCAAAACGAGATCTCGGCCCACAT---
>chr6B_2180
CAAAT---------------------------------------------------------------------------
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----------------------------------------------------------------------------CGAC
TGGCCTCGGGTCACGATGTTCAATAACGTCGTTGCCGCATCTGCACTTCGGGAAGTTGCATGGACCGGTGCTAGATACAC
TTGGACTAAC-AAGAAGTTA-CCCCCGTGCATAGTGTTTTAGATTGGGTTTTCATCTTGACTGACTGGGAGGTCCTCTTC
CCCTTGTGCACGCTTATTGCTGAAATGTGTATTGGCTCGGATCACATCCCGCTTATCTTAGCCTCTAGGGAGGATAGGAT
CAAGCGCATCCCTCGTTTCTACTTTGAAACCGGTTGGTTTGAGGTTGAGGGCTTTATTTCTATGGTTATCGCATGCTGGG
AGCAAGCGATCGCCTCTTCTGGATACCAGCGAGGTCCCCTGGACCTTTGGATTGTGGCGGCAGGTATGTTGCGATCCTTC
CTTCATGGATGGGATGCCAACCAT-----------------------GGAAGCCC-----------------------TT
ATTGAGGAAATCAAACACCTCGATGCCCTTGCTGACTCTAGAGTGTTTTCAAAGGCTGAGTGGGCTAACCGCTACGCCCT
CGAAAACCAGGTGCTCTCCATCCGAAGGGAAGAAGAGGAGTATTGGTGCCGTAGGGGTAGTGTCAAGTGGGTTATGAAGG
GCGACGCTAACACGGGCTATTTCCACGCATAGACAAATGGTTGCAAGCGCAAATGCTCGATCCTTAGGCTTCAATCTGAC
CAAGGGGTTGTAGTGCGTCAAGACGAGATTATGGCCCACAT---
>chr7B_2239
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-------------------------------------------------GGGAAATTGCTAGGACTGGTGCTAGATTTAC
GTGGACAAACAAACAACTCT-CCCCGGTACGTAGTGTACTCGATCGTGTCTTTGTGACCTTCGATTGGGAAGTGCTCTTT
ACCATGTGTACATTGGTGGCGGAAACGTGCATTGGGTCGGATCACGTGCCGCTGATCTTATCCTCTGGGGAGGACCAGAT
TAAGCGTAGCCCTCGTTTCTACTTCGAAATAGGGTGGTTTGAGGTAGATGGCTTCGACCCCATGCTCATTGCGTGCTGAG
AGCGCGCAAGGGCTGCGGTCGGCCGCTCCAGTGGTCCCCTTGACACTTGGATTTCGGCGGCTGGTGCCCTCCGTTGTTTC
CTCCGTGGGTGGGGTGCAAACCAT-----------------------GGGAGCAATGTGAAACGTGCTAGGGAAGCTATT
ATTGCTGAAATAAAAACCCTAGACGTTCAAGCTGACTCAAGACCCTTTTTGGAAGCTGAATGGGCCAATCGATATGCCCT
AGAAAACCACGTGCTTGCTCTCCTAAGGGAGGAGGAGGAATACTAGTGCCGTAGGGGCGGTGTCAAGTGGATTACCAAGG
GCGACGCGAATACGGGATATTTCCACGCCTTTCTCAACGGCTGTAAACGGAAATGCATGATTCTGAGACTGCAATCCGAT
CAAGGG-TGTTGGTTAGTCAGACTGAGATCTCTGCACACATTTA
>SNPs
S-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
--------------------S-------------------S-----SSSSS-SSSS------------------------
--------------------------------------------------------S------S----------------
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---------------------------------S----S------------------------------S----------
-------------------------------------------------------------------SSS----------
S-----S-------------SSSSS-------------------------------S--------------------S--
-----S---SS----------------------------------------------S----------------SS----
-------------------------------------------------------------------------S------
-----------------S--------------------------------------------------------------
--------------S----------------S-------------------------S----------------------
----------------S---------------------------------------------------------------
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------------------------------------S-----------------S-------------------------
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---------------S--S-------------------------------------------------------------
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-------------------------------S---S---SSS-SS-S---S----S------------------------
-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------
---S--S----S-----------------S--------------------------------------------------
--------------S--------------S----S---------S-----------------------------------
-----------------------------------------------SS---------------S---------------
-------------------------S-------S---------S-----------------------------------S
---S-------------------S-S-----S------------------------------------------------
-----------S--S-------------------------S---------------------------------------
----------S---S--S--S----------------S------------------------------------------
---------------------S--------------------------S-------------------------S-----
------S---------------S------------------------------S----------------S---------
--------------S-----------------------------
>forward_967
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-------------------------------------------------------------------CACCACCAAACTC
CATCCGA-------------------------------------------------------------------------
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>reverse_2040
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---------------------------------------GCAAGTGTGTGGCGTTTGAT---------------------
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