>input_sequence_65148
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------------------------------------------------------ATGTTGTTCAATAAGCCGGAAAGGGA
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-------------------------------------------------CACACACCACACCTCACCTCTCGAGAAAAGA
AGTAGACATAGAAGAACCATAAGAAAAAGGAAGAGAAAAAAAGAAGAAAGGGAAAATGGAATCTTCTACCTCATCCTCCG
CCCTTCTCCTCC---ATGGCCTCGCTTGTGCTTCTCCCTCGAAGGCGCGACCTTTCTTCGTTTTTCCCCCGTCAGCCCGT
CCTCCCCACTCTCGACCTCCATCTCCATCAACGCCTCCTCTCCACGGCGGCTCTTGCCCCATGCTCCTCGCGCTGCCGGC
CGCGGCAGTGACAAGGACAACCGCGTGCAGGAGCTGAGGGTGCCTGATTCTTGGCTCACGCCCACAGGAGCAGCACAGGT
TCGCATCCATGATTCCATCTCC---GTCATC----------TCATTTAGTCTTGTAGCAGCACTTCCTGGTGATTGTGTT
ATTTTGCTCCAGTTGGTGGGTAATAATAATTAGGGGAGTGAACATGCTTATCTAATGATGCCTATCAGAGACCAGTTGCA
TTTCTTATCAAACCTATTATGTAGCCTGAAAGTTGTTAT---G-------------------------------------
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---------------------------------------------------------CTCCTGCTCCTGTTTCTGGACTG
TTATTAGCTCAAGTCTATTTAC------------ACGCCATTTGTACGGTCATTGAGCAAGGCCACCTCCATCTTTCCAC
CTCTTACCAGGAATCCGAATGGCTGAGGGGAACGCTGCACAAGTGGCTGGACGATGAGTACTGCCCAGAGCCGGCCAACG
TGGACATCAGCAACACCGCCGCAAGGTCGTACCACGAGTCCCTGACGGCGAAGCAATCTGACGTGGGAGAGATCCTGATG
AAGATGGTCGGGGATCTGCAGGAGCTGTCGTACCAGGAGAGCTTCCACGGGGCCTTCTCCGCCGCCAACGCCGCGGTGCG
TTTGATAACGCAGAGGATGGAGCCGTCAGCCGGTGAGTGA----------------------------------------
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>chr5A_1_TraesCS5A01G096200
TTATGGACAGCTTTGCATTCAGTCTATGTTGTGTGTTCATTACCATTTGTTCTTTCTTCATCCTCTTGAGATTTTGTGTT
GTTGCTTAGGGTTAATTACCCAAAGGCTTCATAAACAAGCTAGGACCATGTCCTAAGTTCGAATTCATATGTGTTGTACT
ATTGTTATAGAAAAGCTAATGGACCTATGAAGATTGAAGAATCACTGCATTTTGTGTTTT--TTTTGCATGTATGAGAAG
TTATACAGCTGTGAATGTATTGTTTCTTTTCTTTCATACCACAGCTATGACCCATTTTTCAT---AAAGAGGGTCTCCGA
TTCTTGGTTCCGCCATAATTTTT-TT-TCCCCATATGATCACTCGCTTGCTAGATTATTAATTTTTGATAATGTCTTGCT
TGCATCATTATGGTGTTGTTTTGTTGAACTTTTAAGAATGAAGCACATTATAGCACCCAAAATAAAAAGAAACAAGCACA
TTCAGAGGGAAGAAAATCTACTTTCCCCCCTCGAACTAATTTGGGCTCACTTAATCTTAAGTCAGCCAAAGCGGCATTTT
AGCCCTTATCTGTTTTTTGGAAGAACATGATTAACACA-AAAAAATCTGCAAAATTCCATATGCTTTTGTTTTATAAAGT
TTATACGAGTATAATTTTAGTTTAGAAATAAGAAAGATCTCAATTGTGAAGGAAAAAACAAATTGTTT---ATATTGCAC
AGGTCACAACTTTTTCATATTTTCAAATCGACATTAATATGCATCATATTCTTGACACTTCTACTTCGGTACACCCCCTA
AACACATAATAGGCTCAGATTATTCGATACCTCTTCGTTAGTAAGGGCATGATGGTCATATTTGTAAAAGTGGCCCGCCC
GCCCGCCCGACCTAAGACGTGCAGTACATATACGCATTCGTTAGCAAGGCTCATTTTTTGAACTAACATTTAATATGCAT
CTTTAACTGCATGT---ACAATCCTTTTTTCAGAATTTTGGAAAATATATAATTATGTTGTTCAATAAGCCGGAAAGGGA
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-------------------------------------------------CACACACCACACCTCACCTCTCGAGAAAAGA
AGTAGACATAGAAGAACCATAAGAAAAAGGAAGAGAAAAAAAGAAGAAAGGGAAAATGGAATCTTCTACCTCATCCTCCG
CCCTTCTCCTCC---ATGGCCTCGCTTGTGCTTCTCCCTCGAAGGCGCGACCTTTCTTCGTTTTTCCCCCGTCAGCCCGT
CCTCCCCACTCTCGACCTCCATCTCCATCAACGCCTCCTCTCCACGGCGGCTCTTGCCCCATGCTCCTCGCGCTGCCGGC
CGCGGCAGTGACAAGGACAACCGCGTGCAGGAGCTGAGGGTGCCTGATTCTTGGCTCACGCCCACAGGAGCAGCACAGGT
TCGCATCCATGATTCCATCTCC---GTCATC----------TCATTTAGTCTTGTAGCAGCACTTCCTGGTGATTGTGTT
ATTTTGCTCCAGTTGGTGGGTAATAATAATTAGGGGAGTGAACATGCTTATCTAATGATGCCTATCAGAGACCAGTTGCA
TTTCTTATCAAACCTATTATGTAGCCTGAAAGTTGTTAT---G-------------------------------------
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---------------------------------------------------------CTCCTGCTCCTGTTTCTGGACTG
TTATTAGCTCAAGTCTATTTAC------------ACGCCATTTGTACGGTCATTGAGCAAGGCCACCTCCATCTTTCCAC
CTCTTACCAGGAATCCGAATGGCTGAGGGGAACGCTGCACAAGTGGCTGGACGATGAGTACTGCCCAGAGCCGGCCAACG
TGGACATCAGCAACACCGCCGCAAGGTCGTACCACGAGTCCCTGACGGCGAAGCAATCTGACGTGGGAGAGATCCTGATG
AAGATGGTCGGGGATCTGCAGGAGCTGTCGTACCAGGAGAGCTTCCACGGGGCCTTCTCCGCCGCCAACGCCGCGGTGCG
TTTGATAACGCAGAGGATGGAGCCGTCAGCCGGTGAGTGATCGTTGACAGACAGAGCTGGCCGAT-CGGCAATGGGTGGC
TCAAGTTGTCTGGCTGCCCCGACCATCCTTGTGTTTAGTGCTTCGGGGTTGATGCGGCATGTTTGTCCACGGGAAGGCAA
TCTGCTTTGTTTCACTGGGAAAATGCTGTAATTCGCATGCAGATTAGCTTTGTGAATTACCTGGCGTTGCGTTGGCGTTG
GCGTTGGCGTTGGCAAGTGGTCTGTTCAATTTGAATCCAAGTGACATACCGTGTCCTGCTCGACCGATGTTCTTTTTTTT
ATCTGGAACACCTAACATTCCAATTAAAGTCCGACTGCCAAACATGTAGGCTGTCAGGAGCTCCCCTCGACCCACAAGCC
GACAGCACATGCGCTGGGACATTACATAACCGGGGGCAGTACATGACTTGATGATCTATAAAACATATCTGTGGCAGATG
CTTTGCTTCGCGGAATAAGACCTTGTACAAGGGAGGTGCTTAGAGAAATAAACTAGGCTTTTCTTAAGCATCAGTGCTTA
TTTGTATAGAATAGACGCTTAACTAAGCGTCTCTAACTAAGCTTAACTAAGCGTCTCTTCTGTAGAAATAGGCATCGGTG
CTTTAGAAAAACCTGATTTATTTTCATAAGCATCTCTCTAAGCACCTTTCATTGTATAAGACCTAAGACACCAAGAGGTC
CACGATCCTGGCCGACGGATAATACAGCCGACAAGCAATCCGTCTCAAACATCACCTATCCCATTTCGTACAATTCAGCT
AACCTGATGGCCTGTAGAAGAGCTTCAGATTTCGCTGTTAGCCCAAACTACTACTCCCTCCGTTCCTAAATATAAGTCTT
TTTAAACATTTCAAATGAACTACAACATACGAATGTAAGTAGACATATTTTAGAGTGTAGATTCACTCATTTTATTCCGT
ATATAGTCATTCGTTGAAATCTCTATAAAACTTATATTTGGAAATGGAGGGAGTAGTAAATAGCTCTCACTTGTACACTT
A
>chr5B_1
TTATGGACAGCTTTGCATTCAGTCTATGTTGTGTGTTCATTACCATTTGTTATTTCTTCATCCTCTCGAGATTTTGTGTT
GTTGCTTAGGGTTAATTACCCAAAGGCTTCATAAACAAGCTAGGACCATGTCCTAAGTTCGAATTCATATGTGTTGTACT
ATTGTTATAGAAAAGCTAATGGACCTATGAAGATTGAAGAATCACTGCATTTTGTGTTTTATTTTTGCATGTCTGAGAAG
TTATACAGCTGTGAATGTATTGTTTCTTTTCTTCCATACCACAGCTATGACCCATTCTTCAT---AAAGAGGGTCTCCGA
TTCTTGGTTCCGCCATAATATTTGTT-TTCCCATATGATCACTCGCTTGTTAGATTATTATTTTTAGATAATGTCTCGCT
TGCATCATTATGGTGTTGTTTTGTTGAACTTTTAAGAATGAAGCACATTATAGAACCCAAAATAAAAAAGAAAAAGCACA
TTTAGTGGGAAGAAAATCTACTTTCCCCCCTCGAACTAATTTGGGCTCACTTAACCTTAAGTCAGCCACGGCGGCATTTT
AGCCCTTATCTGATTTTTGGAAGGACAGGATTAAC-CCCAAACAATCTGCAAGATTCCATAAGCTTTTGTTTTATAAAGT
GAATACCAGTACCATTTTAGTTTAGAAATAAGAAAGATCGT---------------------------------------
-----------------------------GACATTAACATGCATCATAT-------------------------------
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---CGCCCGACCTAGGACGCGCAGTAC---------TTCGTTAGCAAGGCTCATTTTTTGAACTAACATTTAATATGCAT
CCTTAACTGCGTGT---ACAATCCTTTTTTCAGAATTTTGCGAAATATATAATTATGTTGTTCAATAAACCGGGAAGGGA
GACACC--------------------------------------------------------------------------
---------------------------------------------------CACACCACACCTCACCTCTCGAGAAAAGA
AGTAGACATAGAAGAACCAGAAGAAAAAGGAAGAGAAAAAAAAGGGG------AAATGGCATCTTCTACCTCATCCTCCG
CCCTTCTCCTCC---ATGGGCTCGCTTGTGCTTCTCCCTCGAAGGCGCGACCTTTCTTCG--TTTCCCGCATCAGCCCCT
CCTCCCCACTGTCGACCTCCACCTCCATCAACGCCCCCTCTCCACGGCGGCCCTTGCCCCCTGCACCTCGCGCCGCCGGC
CGCGGCGGTGACAAGGACAACCGCGTGCAGGAGCTGAGGGTGCCTGATTCTTGGCTCACGCCCGCAGGAGCAGCGCAGGT
TCGCATCCATGATTTCACCTCCTCCGTCATCTCCATCACGCCCGCA----------------------GGA---------
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--------------------GTAGCTCGAAAGTTGTAAT---GTAGCTCCTGAACTTAAAATCCCTA--------TTATG
GAGGAGCTTGAAAGTTATTAGG----------AACGCTCTTATATTTCAATAG---AGGGAGTACTTCACAAAGC-----
-----------------------------------------------TAGATTATTTCTCCTGCTCCTGTTT---GACTG
TTATCAGCTCAAGCCTGCCTATTGATACGCTCATACGCTATTTGTACGGTCATTGAGCAAGGCCATCTCC-TCTTTCCAC
CTCTTACCAGGAATCCGAATGGCTGAGGGGAACGCTACACAAGTGGCTGGACGACGAGTACTGCCCCGAGCCGGCCAACG
TGGACATCAGCAACACGGCCGCAAGGTCGTACCACGAGTCCCTCACGGCGAAGCAGTCTGATGTGGGGGAGATCCTGATG
AAGATGGTCGGAGATCTGCAGGAGCTGTCGTACCAGGAGAGCTTCCACGGGGCCTTCTCCGCCGCCAACGCCGCGGTGCG
TTTGATAACGCAGAGGATGGAGTCGTCAGCCGGTGAGTGATCTTTGACATACACAGCTAGCCGAT--GGCATTGGGTGGC
------------GCTGCCCCGACCATCCTTGTGTTTAGTGCTTCGGGGTTGATGCGGCATGTTTGTCCACGGGAAGGCAA
TCTGCTTTGTTTCACTGGGAAAATGCTGTAATTCGGATGCAGATTAGCTTTGTGAATTACCTGGCGTTG-----------
GCGTTGGCGCTGGCAAGTGGTCTGTTCAATTTGAATCCAAGTGACATACCGTGTCCT-----------------------
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>chr5D_1
TTATGGACAGCTTTGCATTCAGTCTATGTTGTGTGTTCATTACCATTTGTTCTTTCTTCATCCTCTCGAGATTTTGTGTT
GTTGCTTAGGGTTAATTACCCAAAGGCTTCATAAACAAGCTAGGACCATGTCCTAAGTTCGAATTCATATGTGTTGTACT
ATTGTTATAGAAAAGCTAATGGACCTATGAAGATTGAAGAGTCACTGCATTTTCTGTTTTC---TTGCATGTCTAAGAAG
TTATACAGCTGTGAATATATTGTTTCTTTTCTTTCATACCACAGCTATGACTCATTTCTCGTAAAAAGGAGGGTCTCCGA
TTCTTGGTTCTGCCATAATAATT-TTATTCCCATATGATCACTCGCTTGCTAGATTATTAATTTTAGATAATGTCTCGCT
TGCATCGTTATGGTGTTGTCTTGTTGAACTTCAAAGAATCAAGCACATTATAGCACCCAAAATAAATAAATAAATAATC-
---------AAGCACATCTACTTTCCCCCGTTGAACTAATTTGGGCTCACTTAACCCTAAGTCAGCCACACC-------T
AGCCCTTATCTGATTTTTGGAAGGGCAGGATTAAC-CA-AAAGAATCTGCAAAATTCCATACGCTTTGCTGTTATAAAGT
GTATACCAGTACAATTTTAGTTTAGAAATAAGAAAGATCACAATTGTGAAAGAAAAAACATATTTTTTTTAATATTGCAC
AGGTCACAAATTTTT-ATATTTTCAAATCAACATTAATATGCACCAT---------------------------------
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-----------------------------------------------------TTTTTTGAACTAACATTCAATATGCAT
CCTTAATTGCACGTAGCACAATCGTTTTTTCAGAATTTTGTAAAATGTATAATTTTGCTTTTCAATAAGCAGGGGAGGGA
CACTAAAAAAGCGAAGAAAAGATCAGATCGATGTAATTTAGATTTAAAAAGGTTTTAGAAGAAAACAATGAACTTTATGT
ATTAATTTGATTTATACAAAAAGAGTTTGGAAAGGGGCAACACACCAGTCACACACCACACCTCCAGAA----------A
AGGAGACATAGAAGAGGAAGAAGAAAAATAG-GAGAAAAAATAA--------AAAATGGCATCTTCTACCTCATCCTCTG
CCTTTCTCCTCCTCCATGGCCTCGCTTCTGCTTCTCCCTCGAAGGCTTCTGCTTTCTTCG--CTTCCCCCATCAGCCCCT
CCTTCCCACTCTCGACCTCCACCTCCATCAACGCGTCCTCTCCGCGGCGGCCCTTGCCCCCTGCTCCTCGCGCCACCGGC
CGCGGCGGTGACAAGGACAACCGCGTGCAGGAGCTGAGGGTGCCTGATTCCTGGCTCACGCCCGGAGGAGCAGCGCAGGT
TCGCATCCATGATTCCACCTCC---GTCATCTCCATCCCGTTCATTTAATCTTGTAGCGGCACCTCCTGGA---------
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--------------------GTAGCTCGAAAGTTTTATGTACGTAGCTCCTGAACTTAAAATCCCTGTTATGGTCTTATG
GAGGAGCTCGAAAGTTGTTATGCAGTGATCTAAACGCTTTTATATTTTCAATACAAAGGGAGTACTTCACAAAGCTACTC
CCTCCGTTTCAAAATAGATGACCTAACTTTGTACTAACTTTAGGGAGTAGATTATTTCTCCTGCTCCTGTTTCTGGACTG
TCATTAGCTCAAGTTTATTTAC------------ACGCCATTTGTACAGTCATTGAACAAGGCCACCTCCATCTTTCCAC
CTCTTACCAGGAATCCGAATGGCTGAGGGGAACGCTACACAAGTGGCTGGACGACGAGTACTGCCCCGAGCCGGCCAACG
TGGACATCAGCAACACGGCCGCAAGGTCGTACCACGAGTCCCTCACGGCGAAGCAGTCTGATGTGGGGGAGATCCTGATG
AAGATGGTCGGAGATCTGCAGGAGCTGTCGTACCAGGAGAGCTTCCACGGGGCCTTCTCCGCCGCCAACGCCGCGGTGCG
CTTGATAACGCAGAGGATGGAGTCGTCAGCCGGTGAGTGATCGTTGACAGACAGAGCTAGCCGAACCGGCAATGGGTGGC
TCAAGTTGTCTGGCTGCCCCGACCATCATTGTGTTTAGTGGTCGA-----------------------ACGGGAAGGCAA
TCTGCTTTGTTTCACT----------------------GCAGATTAGCTTTGTGAATTACCTGGCGTTG-----------
GC------------AAGTGGTCTGTTCAATTTGAATCAAAGTGACATACCGTGTCCTGCTCGACCGATGTT---------
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>SNPs
------------------------------------------------------------------S-------------
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------------------------------------------------------------------------S-------
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-------------------S--------S------------------------------------S----------S---
--------------------------------------------------------------------S---S-------
--S--S------------------------------------------------S-------------S-----------
------------S----------S---S-------S------S------------------S------------------
S-----S----S---------------------------S----------S---------S---S---------------
---------S-----S---------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS-----------S----S-------SSSSSSSSS--------------------------------------------
-S--------------------------------------S--------------------------------S------
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-------------------S----------------------S-S-SSSSSS-------S--------------------
------------------------------------------------------------SS--------S-------S-
---------------------S-----------------------------S--------S------------S------
------S--------------------------------------------------------S----------S-----
-----------------S------------------------------S---------S----S------SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS-----SS---------S-------------------------------------------
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------------------------------------S-----------------S-----------S-------------
----------------S--------------------------S-----------S-----S-----S------------
-----------S--------------------------------------------------------------------
----------------------S-----------------------------------S---------------------
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-----------------------------------S---------------------------------SSSSSSSSSSS
---------S-------------------------------------------------------------SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S
>forward_879
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-----------------------------------------------------------ATTTGTAAAAGTGGCCCGCC-
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>reverse_2969
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--------TGGCCGACGGATAATACAGC----------------------------------------------------
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