>input_sequence_65143
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----------------------------------------------ATGGCAGGTGTCACATCGGATTCTTCACAGGAGA
CGATGAGTCACCGGTGGAACCTCGCCGGCATGACGGCGCTCGTCACCGGAGGAACCAAGGGGATCGGGTATGTTCAGTTA
TGCTTCATTTCGTGGCTTTGCGCACTCGATTAGTTAGTTGGTGGTGCACGCATTGATCAACCGCTCGATTCATTTTGTAC
GTCCGTAGGCTTGCCATCGTGGAGGAGCTGGCCGGGCTGGGCGCCAAGGTGCACACCTGCGCACGCAACGCCGCCGGCCT
GGACAAATGCCGGCGGCGATGGCAGAGCAAGGGCCTCCACCAGCTGGTCACCGCCTCCGTCTGCGACGTCTCCGTGCGCG
GCGACAGGGAGGCCCTCGTCGCCACGGTCCGCGACCTCTTCCACGGCAAGCTCCACATCCTCGTCAACAACGCCGGCCAA
TCCCTCTACAAGGCGGCCGCGGACACCACGCCGGAGGACTACGCCCGCATCATGGCCACCAACCTCGACCCCTGCTTCCA
CCTCTCCCAGCTCGCGCACCCGCTGCTCCGCCAAGCCGGGGCCTCCTCCGTGCTGCTCATCTCCTCCGTCACCGGCTACA
TCGCCTACCCGGCGCTCTCGGTTTACTCGCTCACCAAGGGGGCCATGCACCAGCTCGCCAGGAGCCTGGCCGCCGAGTGG
GCGACGCACGGCATCCGCGTCAACTGCGTCGCGCCGGGTGGCATCGACACCGATATCTCCACCACCACGCTCGCCACCGA
CCCAACCATGGCGCGGAGGCTCGCCGACATGGAGACGGCGCGGGTGCCCATGCGCCGCTTCGGCAAGCCCCACGAAGTCG
CCGCGGTCGTCGCCTTCCTCTGCATGCCCGGCGCCGGGTACATGACGGGCCAGGTCATATGCGTCGATGGCGGACGCACA
ATAGCAGCCAAGCTATGA--------------------------------------------------------------
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--
>chr4A_1_TraesCS4A01G179900
ATGTTCAATAGTTAGGTGTGGCGGAGATGCGTATGTTGAGATGGATGTGTAGCCACACGAGGAAGGATCGAGTCCGGAAT
GATGATATATGAGATAGAGTTGGGATAGCACCAATTGAAGAGAAGCTTGTCCAACATCGTCTGAGATGGTTTGGGCATAT
TCAGCGCAGGCCTCCAGAAGCTCCGGTGCATAGTGGACGGCTAAAGCGTGCGGAGAATGTCAAGAGAGGGCGGGGTAGAC
CGAATTTAACATGGGAGGAGTCCGTTAAGAGAGACCTGAAGGATTGGAGTATCACCAAAGAGCTAGCTATGGACAGGGAT
GCGTGGAAGCTTGCTATCCATGTGCCAGAGCCATGAGTTAGTTGCGAGATCTTATGGGTTTCACCTCTAGCCTACTCCAA
CTTGTTTGGGACTAAAGGCTTTGTTGTTGTTGTAGAGATATTAATATTAAAAAAACTTTTAGATATGCGGGATTAGGAAA
AAGGGGAGAAGGACGACTCAAACCTAGGTCTTCTAGACTGAAGGAGGATGCTCTATCCACTTGGCTGTGTGAATCTTTGT
GCTATATGGTGGGATTTAAAGTTATTGAAAAAGCTGCGGTCGGGTGTAAAAGAAAAAACGATTTGTTTTTTTCTAACTTA
TGGGTGGTGTGGTGGGTAATTATGGACAACTTCGGAGTCAATTTTCATGACGGACGAAGCATTATTGGCTTTATTATATT
ATTATAAGGGTAGAGGGGTAGATAGATAGATTTGCCGAAAGCAGTGAGCAAAAAGCAGCCGAGCAGGAGGCTGGGAGCAT
ATGCATCGAAAATATCTATCTTCCTTGGCAGTG-ACGAACTTGGAGGGGACTCCAATACCAAGTGTGGCAACTAAGCATG
ATGTGAAACAAGATGGATGGGATGCAGGGTCATTGGGCCGATCGATCCATCACACAAACATA----TATAAC-TGGCTAC
TGATGCAGGGTCGATCAGTCGCTATAGCTGATATATTTACCGACCGATGGCAGGTGTCACATCGGATTCTTCACAGGAGA
CGATGAGTCACCGGTGGAACCTCGCCGGCATGACGGCGCTCGTCACCGGAGGAACCAAGGGGATCGGGTATGTTCAGTTA
TGCTTCATTTCGTGGCTTTGCGCACTCGATTAGTTAGTTGGTGGTGCACGCATTGATCAACCGCTCGATTCATTTTGTAC
GTCCGTAGGCTTGCCATCGTGGAGGAGCTGGCCGGGCTGGGCGCCAAGGTGCACACCTGCGCACGCAACGCCGCCGGCCT
GGACAAATGCCGGCGGCGATGGCAGAGCAAGGGCCTCCACCAGCTGGTCACCGCCTCCGTCTGCGACGTCTCCGTGCGCG
GCGACAGGGAGGCCCTCGTCGCCACGGTCCGCGACCTCTTCCACGGCAAGCTCCACATCCTCGTCAACAACGCCGGCCAA
TCCCTCTACAAGGCGGCCGCGGACACCACGCCGGAGGACTACGCCCGCATCATGGCCACCAACCTCGACCCCTGCTTCCA
CCTCTCCCAGCTCGCGCACCCGCTGCTCCGCCAAGCCGGGGCCTCCTCCGTGCTGCTCATCTCCTCCGTCACCGGCTACA
TCGCCTACCCGGCGCTCTCGGTTTACTCGCTCACCAAGGGGGCCATGCACCAGCTCGCCAGGAGCCTGGCCGCCGAGTGG
GCGACGCACGGCATCCGCGTCAACTGCGTCGCGCCGGGTGGCATCGACACCGATATCTCCACCACCACGCTCGCCACCGA
CCCAACCATGGCGCGGAGGCTCGCCGACATGGAGACGGCGCGGGTGCCCATGCGCCGCTTCGGCAAGCCCCACGAAGTCG
CCGCGGTCGTCGCCTTCCTCTGCATGCCCGGCGCCGGGTACATGACGGGCCAGGTCATATGCGTCGATGGCGGACGCACA
ATAGCAGCCAAGCTATGACAATACACATGTAACCGTGAGGAGCCGCATTCATGGCTAGAAGCTAAGTTTTGCTTGATTAT
T--AAGATGATTCAGATTGCCAGTAATCACTTGCACCATGCTCCCCATGAGTTTGCAAGGGAAACTGATGCAAAAACAAA
TAAAGCACAGACAAATCTCATCTCAGTTATTTACTCGACTTGCAAAACAACTAATCTGACAAGTTATTGCTGCTTCAAAT
AGTTACTTC---------TGCCATGGGCAT-----------AAACCCCAACAGAGCACAACAAATTTAATTCACCACAAA
TTATATAAGTTGGCCTACACAACACATGATCTCATCATGCTAGCAAATATGGGAGAACAGAGACTCAACGACATGTAGGA
TGGACGGCCCATGCCTA-GGATCAATGCCGCATGTATCTCCTCCCATGAACACAATGTTATCACCAATACAAGAGATCAA
AAACTAGTTCTGATGAGTTGACTCAGAGAAAAGAGAGAGTAGCCTCCACAATTTACAAATGCTTCCCTTCTTCCCCTTCG
ATGGCTTTTGTCTTGCGATAGCCCTTGTCTGTGCCAAACAACC-TAACGCAACAACAAGATTAAGAGGATGCATGTCATG
TAAAAGGGAGGGAGCTTACCACGCATATTCAACACAGCAAAGGCAAACATGTATACTCACCAGTCCATGTAAACAAAAGT
AGAGGCGTAGTTCCCTGACTTGGTGTAGAGCACACGATGATGATAGTCATGGAAGTCAGAGCTGCTCATGAGAAAATATT
CACAACTCAGTTAAACGCAACCTATCAAATGAGAAAATAGAACTTCCCTACCATCAGGTACCACATTTGCAAATTCTAGT
TTACTTACCCTCCATACAGTGGCAGGAAGTTTGATGGGCTCCAAGGGAAGTGATATCCACTGTGAGCTTCAACCGTCTCT
AACACCCTCAAAACCATCCACAGCCAAAGGGTAAACAAGTGAGGGCCAGTGAGGGCAGGACCAACAACCGTGGCAAATCC
CA
>chr4D_739
TAGATGAAC-----------------------------------------------------------------------
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-----------------------------ATTTGCCGAAAGCAATTAACAAAAAGCAGCCGAGCAGGAGGCTGGGGGCAT
ATGCATCGAAAATATCTATCTTCCTTGGCAGTGCACGAACTTGGAGGGGACTCCAATACCGAGTGTGGTAACTAAGCATG
ATGTCCAACAAGATGAATGG-ATGCTAGGTCATTGGGGCGATCGATCCATCACACAAATATA----TATAACTTGGCTAG
TAATGCAGGGTCGATCAGTGGCTATAGCTGATATATATTTCA--CGATGGCAGGTGTCACATCGGATTCTTCACAGGAGA
CGATGAGTAAACGGTGGAACCTCGCCGGCATGACGGCGCTCGTCACCGGAGGAACCAAGGGGATCGGGTATGTTCAATTA
TGCTTCATTTCGTGGCTTTGCACACTCGATTAGTTAGTCGGTGGTGCACGCATTGATCAATCGATCGATTCATTTTGTAC
GTGCCTAGGCTTGCCATCGTGGAGGAGCTGGCCGGGCTCGGCGCCAAGGTGCACACCTGCGCACGCAACGCCGCCGGCCT
GGACAAATGCCGGCGGCGATGGCAGAGCAAGGGCCTCCACCAGCTGGTCACCGCCTCCGTCTGCGACGTCTCCGTGCGCG
GCGACAGGGAGGCCCTCGTCGCCACGGTCCGCGACCTCTTCCACGGCAAACTCCACATCCTCGTCAACAACGCCGGCCTG
TCCCTCTACAAGGCGGCCGCGGACACCACGCCGGAGGAGTACGCCCGTCTCATGGCCACCAACCTCGACCCCTGCTTCCA
CCTCTCCCAGCTCGCGCACCCGCTGCTCCGCCAGGCCGGGGCCTCCTCCGTGCTGCTCATCTCCTCCGTCACCGGCTACA
TCGCCTACCCGGCGCTCTCGGTTTACTCGCTCACCAAGGGGGCCATGCACCAGCTCGCCAGGAGCCTGGCCGCCGAGTGG
GCGACGCACGGCATCCGCGTCAACTGCGTCGCGCCGGGCGGCATCGACACCGATATCTCCACCACCACGCTCGCCACCGA
CCCAACCATGGCACGGAGGCTCGCCGACATGGAGACGGCGCGGGTGCCCATGCGCCGCTTCGGCAAGCCCCACGAAGTCG
CCGCGGTCGTCGCCTTCCTCTGCATGCCCGGCGCCGGGTACATCACGGGCCAGGTCATATGCGTCGATGGAGGACGCACA
ATAGCAGCCAAGCTATGACAATGCACATGTAACCGTGAGAAGCTGCATCCATGGCTAGAAGCTAATTTTTGTTTGATTAT
T--AAGATGATTCAGATTGCCAGTAATCACTTGCACCATGCTCCCGATGAGTTTGCAAGGGAAACTGAGGCAAA-ACAAA
TAAAGCACAGACAAATCTCATCTCGGTTATTTACTCGACTTGCAAAACAACTAATCTGACAAGTTATTGCTGCTTCAAAT
ATGGGAGAAAACTTAGCTTGTCATGGGCATATGTCCAAAACAAACCCCAACAGAGCACAACATATTTAATTCACCACAAA
TTATATAAGTTGGCCTACACAACACATGATCTCATCATGCTAGCAAATATGGGAGAACAGAGACTCAACGACATGTAGGA
GCGACGGCCCATGCCTA-GGATCGATGCCGCGTGTATCTCCTCCCATGAACACAATGTTATCACCAATACAAGAGATCAA
AAACTAGTTCTGATGAGTTGACTCAGAGAAAAGAGAGAGTAGCCTCCACAATTTACAAATGCTTCCCTTCTTCCCCTTCG
ATGGCTTTTGTCTTGCGATAACCCTTATCTGTGCCAAACAACC-TAACGCAACAACAAGATTAAGAGGATGCATGTCATG
TAAAAGGGAGGGAGCTTACCACGCATATTCAACACAGCAAAGGCAAACATGTATACTCACCAGTCCATGTAAACAAAAGT
AGAGGCGTAGTTTCCTGACTTGGTGTACAGCACACGATGATGGTAGTCATGGAAGTCAGAGCTGCTCATGAGAAAATATT
CACAACTCGGTTAAACGCAACCTATCAAATGGAAAAATAGAACTTCCCTACCATCAGGCAACACATTTGCAAATTCTAGT
TTACTTACCCTCCATACAGTGGCAGGAAGTTTGATGGGCTCCAAGGGAAGTGATATCCACTGTGAGCTTCAACCGTCTCT
AACACCCTCAAAACCATCCACAGCCAAAGGGTGAACAAGTGAGGGCCGGTCAGGGCAGGACCAACAACCGTGGCAAATCC
CA
>chr4B_758
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-------------------------------------AAAACAGTGAACAAAAAGCAGTCGAGCAGGAGGCTGGGA----
--GCATCGAAAATATCTATCTTCCTTGGCAGTGTACGAACTTGGAGGGGACTCCAATACCTAGTGTGGTAACTAAGCATG
ATGTCCAACAAGATGAATGG-ATGCTGGGTCATTGGGCCGATCGATCCATCACACAAATATATACGTATAACTTGGCTAG
TAATGCAGGGTCGATCAGTGGCTATAGCTGATATATACTTCA--CGATGGCAGGTGTCACATCGGATTCTTCACAGGAGA
CGATGAGTCACCGGTGGAACCTCGCCGGCATGACGGCGCTCGTCACCGGAGGAACCAAGGGGATCGGGTATGTTCAATTA
TGCTTCATTTCGTGGCTTTGCACACTCGATTAGTTAGTTGGTGGTGCACGCATTGATCAATCGGTCGATTCATTTTGTAC
GTGCGTAGGCTTGCCATCGTGGAGGAGCTGGCCGGGCTCGGCGCCAAGGTGCACACCTGCGCACGCAACGCCGCCGGCCT
GGACAAATGCCGGCGGCGATGGCAGAGCAAGGGCCTCCACCAGCTGGTCACCGCCTCCGTCTGCAACGTCTCCGTGCGCG
GCGACAGGGAGGCCCTCGTCGCCACGGTCCGCGACCTCTTCCACGGCAAGCTCCACGTCCTCGTCAACAACGCCGGCCTG
TCCCTCTACAAGGCGGCCGCGGACACCACGCCGGAGGAGTACGCCCGTCTCATGGCCACCAACCTCGACCCCTGCTTCCA
CCTCTCCCAGCTCGCGCACCCGCTGCTCCGCCAGGCCGGGGCCTCCTCCGTGCTGCTCATCTCCTCCGTCACCGGCTACA
TCGCCTACCCGGCGCTCTCGGTTTACTCGCTCACCAAGGGGGGCATGCACCAGCTCGCCAGGAGCCTGGCCGCTGAGTGG
GCGACGCACGGCATCCGCGTCAACTGCGTCGCGCCGGGCGGCATCGACACCGATATCTCCACCACCACGCTCGCCACCGA
CCCAACCATGGCGCGGAGGCTCGCCGACATGGAGACGGCGCGCGTGCCCATGCGCCGCTTCGGCAAGCCCCACGAAGTCG
CCGCGGTCGTCGCCTTCCTCTGCATGCCCGGCGCCGGGTACATCACGGGCCAGGTCATATGCGTTGATGGCGGACGCACA
ATAGCAGCCAAGCTATGACAATACACATGTAACCGTGAGAAGCCGCATCCACGGCTAGAACCTAAGTTTTGCTTGATTAT
TGCAAGATGATTCAGATTGCCAGCAATCACTTGCATCATGCTCCCGATGAGTTTGCAAGGGAAACTGGGGCAAA-ACAAA
TAAAGCACAGACAAATCTCATCTCGGTTATTTACTCGACTTGCAAAACAACTAATCTGACAAGTTATTGCTGCTTCAAAT
AGTTACTTC---------TGCCATGGGCATATGTCCAAAACAAACCCCAACAGAGCACAACAAATTTAATTCACCACAAA
TTATATAAGTTGGCCTACACAACACATGATCTCATCATGCTAGCAAATATGGGAGAACAGAGACTCAACGACATGTAGGA
TCGACGGCCCATGCCTAAGGATCAATGCCGCATGTATCTCCTCCCATGAAGACAATGTCATCACCAATACAAGAGATCAA
AAACTAGTTCTGATGAGTTGACTCGGAGAAAAGAGAG--TAGCTTCCACAATTTACAAATGCTTCCCTTCTTCCCCTTCA
ATGGCTTTTGTCTTGCGATAACCCTTATCGGTGCCAAACAACCTTAACACAACAACAAGATTAAGAGGATGCATATCATA
TAAAAGCGAGGGAGCTTACCACGCATATTCAACAAAGCAAAGGCAAAAATGTATACTCACCAGTCCATGTAAACAAAAGT
AGAGGCGTAGTTCCCTGACTTGGTGTAGAGCACACGATGATGGTAGTCATGGAAGTCAGAGCTGCTCATGAGAAAATATT
CACAACTCAGTTAAACGCAACCTATCAAATGGAAAAATAGAACTTCCCTACCATCAGGTAGCACATTTGCAAATTCTACT
TTACTTACCCTCCATACAGTGGCAGGAAGTTTGATGGGCTCCAAGGGAAGTGATATCCACTGTGAGCTTCAACCGTCTCT
AACACCCTCAAAACCATCCACAGCCAAAGGGTGAACAAGTGAGGGCCGGTGAGGGCAGGACCAACAACCGTGGCAAACCC
CA
>SNPs
SS-S-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------S--------------------------------
------------------------------------------------------------S-------S-----------
----SS---------S----S----S--------------------------------S--------------------S
-S-----------------S----------------S-SS-SSS------------------------------------
----------------------------------------------------------------------------S---
---------------------S--------------------------------------S--S----------------
--S-----------------------------------S-----------------------------------------
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------------------------------------------------------------------------------SS
--------------------------------------S--------SS-------------------------------
---------------------------------S----------------------------------------------
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--------------------------------------S-----------------------------------------
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-------------------------------------------S------------------------------------
---------------------------------------S--------S-------------------------------
---------------------------------------------S----------------------S-----S-----
------------------------S-------------------------------------------------------
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-S------------------------------------------------------------------------------
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--------------------S-----S-----------------------------------------------------
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------------------------------------------S-------------------------------------
-------------------------------SS---------------------------S-------------------
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--------------------------------S--------------S--------------------------------
--
>forward_219
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---------------------------------------GCTAAAGCGTGCGGAGAATG---------------------
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>reverse_1489
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------------------------------------------------ATCATGGCCACCAACCTCG-------------
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--
>forward_614
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----------------------------------TGCGGTCGGGTGTAAAAGAA--------------------------
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--
>reverse_2501
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--------------------GCCCTTGTCTGTGCCAAAC-----------------------------------------
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--
