>input_sequence_65118
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--------------------------------ATGGAGTTTCTAGGCTTGCTAGCTCTTGCCATTGCCGCGGTGGTCGGA
GCTGTCGCCGGCGATGACTCAACCTGGAGCAATGGCCGCGCCACGTTCTATGGCGGCAACGACGCGTCAGGAACAATGGG
TAAGCGCACAGAAACGAGGTCTAGTTAGGCCAGCCGTTTGAGCTGTTCATCGCCGGCGCATGCTTGCTAACTAATCTTTG
TGATATGTGCGTGGTGTGTGCAGGAGGAGCGTGTGGGTACGGCAACATGTTCAGCGCGGGGTACGGGACGAACACGGCGG
CGCTGAGCACTGCGCTGTTCAACAACGGGCAGAGCTGCGGCGCGTGCTTCGAGATCCGGTGCGCCGGCAGCGGGAGCTGC
CTGCCGGGCTCCGCCGTCGTGACGGCCACCAACCTCTGCCCGGCCAACTACGCACTCCCCAACAACGAGGGCGGGTGGTG
CAACCCGCCGCAGTCGCATTTCGACCTCGCTGAGCCTATGTTCACTAAGATCGCCCAGGCCCGTGCCGGCGTCGTGCCCG
TCCAGTACAGAAGGTACCCATCG------CATCGGTGACTTGAGCTCTAACGCGTTGGCCTGTCAGTGCGTCTCGAGCTA
ACATGTAGTATTTGTT-GCACTTTGTAGGGTGGTGTGTGTCAAGACGGGTGGCATCCGGTTCACCATCACCGGCCACTCC
TACTTCAACCTGGTGCTCATCACGAACGTTGCCGGCGCCGGCGACCTGACGGCGGTGTACGTGAAATCTCCTAGCACAGG
ATGGCTGACCATGAGCCACAACTGGGGGGCCAACTGGCAGAACGGCGCCATGCTCAACGGCCAGCCGCTGTCCTTCCGCG
TCACCACCAGCGACGGCCGTACCATCACGTCCAACAACGTGGCGCCCTCCGGTTGGAGCTTCGGCCAGACCTACGCCGGT
AGCCAGTTCTAG--------------------------------------------------------------------
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>chr3D_1_TraesCS3D01G191300
AATTCAAAGCTCAGCATCTTTCAGCTACTTATGCCATCTTAATTCTTAGCTCATTGACATCGAGTGTGTGCCTTTTGTCA
TAGTTGCATGCCTAATGCTTGGAGTCTCTGGTATATTCCAAATTATAGACAATGAACGAAAACTATACATATTTAATTT-
---------------TTTTACCTTTCCCAGTTTTCCAGTGTTCATTCTGAATCTATCATCTGTTTAGCCTGCAGACATAC
CATTTTAACGGCAGCCGACATAACTATCCACTAATAAAATGGTTAATGATCTCGTGATAAGCAAAACTACCACATGGGAC
ACTACCTTGCACTTGAAGCGAGTTGGAAGTCAAAGTGATCTTGGAATTTGAACTCGTGCACAAAACTAAATCGTATCAAC
TCTTTTAATTTCTGCAGTGGATTGGCCATTAACTATGTATCCCAGTATCTCAACTCCTTGATAGATGAGAAAGTCAAGGT
CTTCTCTCAGTTTGTTATTCGAGCTAACAGTACAGGTGCCCATTTGCCCATGTTCTAGAGAACTTAATTACTTCCAATTT
TCTCCCGCCAAAAAATATACTATAT-------------------------------------------------ACAAAC
GTATCTTCTCTGAAATGCTCCAGTGTATCACCGACAGGTGGGACTAACCATTGAAATTTACAGTAACCAACATGCACTAT
TATAATATTAACTTATAAATCCCGAAAAAAAAAT---TCAAGATCGGTTCGCAGTGGCAAACGTGGACTTTACTTCTCAC
AATTTCAGATGCAGAGCATCCCGACCTATGCCTATATATAGGCAACAGCTTCCTGTTAGGATCCTCGCACTCCTCCCAAC
ATCTCCGCACCTGCAAATTCAAGTGTTGAGCTAGCAAAGCCTAGTTGCTTAATACGGTAAGCAGTAGATGAGATGACAAA
TCCCTAGCTAGAGCTATCAAGCCTTGTACT----TGTTCTCTCCTGCGATTTTCGGCTGTATCGATTAACTAGCCCACTC
GTTGCTGATTTTCAGAAGGATTCCATATACACATGGAGTTTCTAGGCTTGCTAGCTCTTGCCATTGCCGCGGTGGTCGGA
GCTGTCGCCGGCGATGACTCAACCTGGAGCAATGGCCGCGCCACGTTCTATGGCGGCAACGACGCGTCAGGAACAATGGG
TAAGCGCACAGAAACGAGGTCTAGTTAGGCCAGCCGTTTGAGCTGTTCATCGCCGGCGCATGCTTGCTAACTAATCTTTG
TGATATGTGCGTGGTGTGTGCAGGAGGAGCGTGTGGGTACGGCAACATGTTCAGCGCGGGGTACGGGACGAACACGGCGG
CGCTGAGCACTGCGCTGTTCAACAACGGGCAGAGCTGCGGCGCGTGCTTCGAGATCCGGTGCGCCGGCAGCGGGAGCTGC
CTGCCGGGCTCCGCCGTCGTGACGGCCACCAACCTCTGCCCGGCCAACTACGCACTCCCCAACAACGAGGGCGGGTGGTG
CAACCCGCCGCAGTCGCATTTCGACCTCGCTGAGCCTATGTTCACTAAGATCGCCCAGGCCCGTGCCGGCGTCGTGCCCG
TCCAGTACAGAAGGTACCCATCG------CATCGGTGACTTGAGCTCTAACGCGTTGGCCTGTCAGTGCGTCTCGAGCTA
ACATGTAGTATTTGTT-GCACTTTGTAGGGTGGTGTGTGTCAAGACGGGTGGCATCCGGTTCACCATCACCGGCCACTCC
TACTTCAACCTGGTGCTCATCACGAACGTTGCCGGCGCCGGCGACCTGACGGCGGTGTACGTGAAATCTCCTAGCACAGG
ATGGCTGACCATGAGCCACAACTGGGGGGCCAACTGGCAGAACGGCGCCATGCTCAACGGCCAGCCGCTGTCCTTCCGCG
TCACCACCAGCGACGGCCGTACCATCACGTCCAACAACGTGGCGCCCTCCGGTTGGAGCTTCGGCCAGACCTACGCCGGT
AGCCAGTTCTAGCCAGCCGGCGACCACTGCAGAAGTTTCCCTGTTCACTTTTACTA---TCTTCGTGTAGAGTGTCAGCG
GAGGATGGCTCTGTTTTGAAGCGGTCTCCTCCGAGTAACAAAATCTGCGTCGCCGTGGTGAGGTTACGCACTTTTGGGGT
TACCGTTTTTGCTCCCCTCAAGGCGTGCTCACATTAGCCGGTTGGGCGGTTTTACCTTAAGTAGGGCGTATTATGCGGAG
ATCCTTAGGTTTGAGCTCAGAAGATTAAAGCAATGGCTGGCTGTGGTGACGAGCATAATGGCTGGTCACCCGCCCATGGG
ATCAAACCAACGGTTTATGTATCTTTGCATGCTATAAAACTAATGGAATGTGTTTTGAGAGCTCGAATGGATTGTTCTAC
CTTTGCTTGGCCAATTCTTTCATTTATGA--------TGTCAAGCTTCAAGATTTTTGTCAGAGTAGGAACGAATGGCTT
CACTTTGATGCCTTTAAATGCCATTCAGCTAACACAAGTGACCCCGTAGAAGATGGAATAATGTTCTCCTCGCCTAGCCC
CTGTCCCGACGGTGCGTCTAGCCTCGTCGGAGGGCGTGTGGAGGTGTGTCTTCATCGAATCTTGTGGGATTCGGTC----
----------------------GGCGTTTGTCTTCGGTGGATCTGCTTGGATTCAATTGTCGTTCGTATGCGTCCGTGTG
TTTGTCTGTAGGTTAGATCCTTTCAATCTACGCTTCTCTTTATCGACGACAGTTGCTGTTCTGGTGCGCTGGTCCTTTGC
GACCTTAGCATGAGACTTCCTGACTATCTAACAAG------GTTTGCCTGGCTCCGTTAAGGGAGGGACGATGACGACGA
CGCACCTTCGGCTCGCTCCAGTGATTGTAGCCTTCAACCACCAAAACCGACTTCCATAAAACAAACTAAAGTTTAATTCT
TTGAGAAGGTGAATGAACGAGAGGCATATACAACTTTTTTTTGTTGTGGCATGGGCTCGTTTCCATTCAAACTATCTTAG
CATTTGCATTCACTT
>chr3A_1
AATTCAAAGCTCAGCATCTTTCAGCTACTTATGCCATCTTAATTCTTAGCTCATTGACATCGAGTGTGTGCCTTGTGTCA
TAGTTGCATGACTAATTCTTGGAGTCTCTGGTATATTCCAAATTATAGACGATGAACGAAAACTAGACATATTTAACC--
---------------TTTTACCTTTCCCAGTTTTCCAGTGTTCATTCTGAATCTATCATCTGTTTAGCCTGCAGACATAC
CATTTTAATGGCAGCCGACATAACCATCCACTAATAAAATGGGTAATGATCTCGTGATAAGCAAAACTACCACATGGGAC
ACTACCTTGCACTTGAAGCGAGTTGGAAGTCAAAGTGATCTTGGAATTTGAACTCGTGCACAAAACTAAATCGTATCAAC
TCTTTTAATTTCTGCAGTGGATTGGCCATTAACTATGTATCCCAGTATCTCAACTCCTTGATAGATGAGAA-GTCAATGT
CTTCTCTCAGTTTGTTATTCGAGCTAACAGTATATGTGCCCATTTGCCCATGTTCTATAGAACTTAATTACTTCCAATTT
TCTCCTGCCAAAATATTATTCACTATACACACACACACACACACACACACACACACACACACACACACACACACACAAAC
GTATCTTCTCTGAAATGTTCCGGTGTATCACCGACAGGTGGGACTAACCATTGGAAATTACAGTAACCAACATGCACTAT
TATAATATTTACTTATAAATCCCGAACAAAAAATATTTCAAGATCGGTTCGCAGTGGCAAACGTGGACTTTACTTCTCAC
AATCTCAGATGCAGAGCATCCCGACCTATGCCTATATATAGGCACCATCTTCCTGTTAGGATCCTCGCACTCCTCCCAAC
ATCTCCGCACTTGCAAATTCAAGTGTTGAGCTAGCAAAGCCTAGTTGCTTAACACGGTAAGCAGTAGATGAGATGAAAAG
TCCCTAGCTAGAGCTATCAAGCCTTGTACTACTTTGTTCTCTCCTGCGATTTTTGGCTGTATCGATTAACTAGCTCACTC
GTTGCTGATTTTCAGAAGGATTCCATATACACATGGAGTTTCTAGGCTTGCTAGCTCTTGCCATCGCCGCGGTGGTCGGA
GTTGTCGCCGGCGAGGACTCAACCTGGAGCAATGGCCGCGCCACGTTCTATGGCGGCAACGACGCGTCAGGGACAATGGG
TAAGCGCACAGAAATGAGGTCTAGTTAGGCCAGCCGTTTGAGCTGTTCATCGCCGGTGCATGCTTGCTAACTAATCTTTG
TGATATGTGCGTGGTGTGTGCAGGAGGAGCGTGTGGGTACGGCAACATGTTCAGCGCGGGGTACGGGACCAACACGGCGG
CGCTGAGCACCGCGCTGTTCAACAACGGGCAGAGCTGCGGCGCGTGCTTTGAGATCCGGTGCGCCGGCAGCGGGAGCTGC
CTGCCGGGCTCCGCCGTCGTGACGGCCACCAACCTCTGCCCCGCCAACTACGCACTCCCCAACAACGAGGGCGGGTGGTG
CAACCCGCCGCAGTCGCATTTCGACCTCGCTGAGCCTATGTTCACTAAGATCGCCCAGGCCCGTGCCGGCGTCGTGCCCG
TCCAGTACAGAAGGTACCCATCGCATTCGCATCGGTGACTTAAGCTCTAACGCGTCTGCCCGTCAGTGCGTCTCGAGCTA
ACATGTAGTATTTGTTTGCACTTTGTAGGGTGGTGTGTGTCAAGACGGGTGGCATCCGGTTCACCATCACCGGCCACTCC
TACTTCAACCTGGTGCTCATCACCAACGTTGCCGGCGCCGGCGACCTGACGGCGGTGTACGTGAAATCTCCTAGCACAGG
ATGGCTGACCATGAGCCACAACTGGGGCGCCAACTGGCAGAACGGCGCCATGCTCAACGGCCAGCCGCTGTCCTTCCGGG
TCACCACCAGCGACGGCCGTACCATCACGTCCAACAACGTGGCGCCCTCCGGTTGGAGCTTCGGCCAGACCTTCGCCGGT
AGCCAGTTCTAGCCAGCCGGCGACCACTGCAGAAGTCTC----TTTACTTTTACTACTATCTTCGTGTAGAGTGTCAGCG
GAGGATGGCTCTGTTTTGAAGCGGTCTCCTCCGAGTAACAAAATCTGCGTCGCCGTGGTGAGGTTACGCACTTCTGGGGT
TACCGTTTTTGCTCCCCTCAAGGCGTGCTCACATTAGCCGGTTGGGCGGTTTTACCTTAAGTA-GGCGTATTATGCGGAG
ATCCTTAGGTTTGAGCTCAGAAGATTAAAGCAATGGCTGGCTGTGGTGACGAGCATAATGGCTGGTCACCCGCCCATGGG
ATCAAACCAACGGTTTATGTATCTTTGCATGCTATAAAACTAATGGAATGTGTTTTGAGAGCTTGAAAGGATTGTTCTAC
CTTTGCTTGGCCAATTCTTTCATTTGTCA--------TGTCAAGCTTCAATTTTTTTGCCAGAGTAGGAACGAATGGCTT
CACTTTGATGCCTTCAAATGTCATTCAGCTAACACAAGCGACCCCGTAGAAGATGGAATAATGTTCTCCCCGCCTAGCCT
CCGTCCCAACGGCGCGTCTAACCTCGTAGGATGACGTGTGGAGGTATGTCTTCATCGCATCTCGTGGGATTCGGTC----
----------------------GGATCCAGTC--------------------------GTCGTTCGTATGCGTCCGTGTG
TTTGTCTGCA------ATCCTTCCAATCTACGATTCTCTTCATCGACGACGGTTGCTGTTCTGGTGAGCTGGTCCTATGC
GGCCTTACCACAAGACTTCTCGACTGTCTAGTAAG------ATTTGCCCGGCTCTGTTAAGGGAGAGGCAATGACGGCGG
CGTGCCTTCGGCTCGCTCCAGTAATTGTAACCTTTAACCACCAAAACCAACTTTCATAAAACAAACTAAAGTTTAATTCT
TTGAGAAGGTGAATGAATGATAGGCATATACAAC-TTTTTTTGTTGTGGCATGGGCTCATTTCCATTCAAAATATCTTAG
CATTTGCATTCACTT
>chr3B_63
--------------------------------------------------------------AGTGTGTGCCTTTTGTCA
TAGTTGCATGCCTAATGCTTGGAGTCTCTGGTATATTCCAAATTGTAGACGATGAACGAAAACTATACATATATATATAT
ATATATATATATATATTTTACCTTTCCCAGTTTTCCAGTGTTCATTCTGAATCTATCATCTGTTTAGCCTGCAGACATAC
CATTTCAAC-GCAGCCGACATAACTATCTACTAATAAAATGGTTAATAATCTCGTGATAAGCAAAACTACCACATGGGAC
ACTACCTTGCACTTGAAGCGAGTTGGAAGTCAAAGTGATCTTGGAATTTGCACTCGTGCACAAAACTAAATCGTATCAAC
TCTTTTAATTTCCGCAGTGGATTGGCCATTAACTATGTATCCCAGTATCTCAACTCCTTGATAGATGAGAA-GTCAAGGT
CTTCTCTCAGTTTGTTATTCGAGCTAACAGTACAGGTGCCCATTTGCCCATGTCCTAGAGAACTTAATTACTTCCAATTT
T-TCCCGGCAAAATATTATTCACTGTGTATATAT------------------------------------ACACACAAAC
GTATCTTCTCTGAAATGTTCAAGTGTATTACCGACAGGTGGGACTAACCATTGGAATTTACAGTAACCAACATGCACTAT
TATAATATTAACTAATAAATCCCGAACAAAAAAAAAATCAAGATCGGTTCGCAGTGGCAAACGTGGACTTTACTTCTCAC
AATTTCAGATGCAGAGCATCCCGACCTATGCCTATGTATAGGCAACAGCTTCCTGTTAGGATCCTCGCACTCCTCCCAAC
ATCTCCGCACTTGCAAATTCAAGTGTTGAGCTAGCAAAGCCTAGTTGCTTAATACGGTAAGCAGTAGATGAGATGATAAG
TCCCTAGCTAGAGCTATCAAGCCTTGTACT----TGTTCTCTCCTGCGATTTTCGGCTGTATCGATTAACTAGCCCACTC
GTTGCTGATTTTCAGAAGGATTCCATATACGCATGGAGTTTCTAGGCTTGCTAGCTCTTGCCATCGCCGCGATGGTCGGA
GTTGTCGCCGGCGATGACTCAACCTGGAGCAATGGCCGCGCCACGTTCTATGGCGGCAACGACGCGTCAGGAACAATGGG
TAAGCACACAGAAATGAGGTCTAATTAGGCCAGCCATTTGAGCTGTTCATCGCCGGTGCATGGTTGCTAACTAATCTTTG
TGATATGTGTGTGGTGTGTGCAGGAGGAGCGTGTGGGTACGGCAACATGTTCAGTGCGGGGTACGGGACCAACACGGCGG
CGCTGAGCACTGCGCTGTTCAACAACGGGCAGAGCTGCGGCGCGTGCTTTGAGATCCGGTGCGCCGGCAGCGGGAGCTGC
CTGCCGGGCTCCGCCGTCGTGACGGCCACCAACCTCTGCCCGGCCAACTACGCACTCCCCAACAACGAGGGCGGGTGGTG
CAACCCGCCGCAGTCGCATTTCGACCTCGCTGAGCCTATGTTCACTAAGATCGCCCAGGCCCGTGCCGGCGTCGTGCCCG
TCCAGTACAGAAGGTACCCATCG------CATCGGTGACTGTAGCTCTAACGCGTTGGCCTGTCAGTGCGTCTCGAGCTA
ACATGTAGTATTTG----CACTTTGTAGGGTGGTGTGTGTCAAGACGGGTGGCATCCGGTTCACCATCACCGGCCACTCC
TACTTCAATCTGGTGCTCATCACCAACGTTGCCGGCGCCGGCGACCTGACGGCGGTGTACGTGAAATCTCCTAGCACAGG
ATGGCTGACCATGAGCCACAACTGGGGCGCCAACTGGCAGAACGGCGCCATGCTCAACGGCCAGCCGCTGTCCTTCCGGG
TCACCACCAGCGACGGCCGTACCATCACGTCCAACAACGTGGCTCCCTCCGGTTGGAGCTTCGGCCAGACCTACGCCGGT
AGCCAGTTCTAGCCAGCCGGCGACCACTGCACAAGTCTC----TTCACTTTTACTA---TCTTCGTGTAGAGTGTCAGCG
GAGGATGGCTCTGTTTTGAAGCGGTCTCCTCCGAGTAACAAAATCTGCGTCGCCGTGGTGAGGTTACGCACTTTTGGGAT
TACCGTTTTTGCTCCCCTCAAGGCGTGCTCACATTAGCCGGTTGGGCGGTTTTACCTTAAGTA-GGCGTATTGTGCGGAG
ATCCTTAGGTTTGAGCTCAGAAGATTAAAGCAATGTCTGGCTGTGGTGACGAGCATAATGCCTGGTCACCCGCCCATGGG
ATCAAACCAACGGTTTATGTATCTTTGCATGCTATAAAACTAATGGAATGTGTTTTGAGAGCTTGAAGGGATTGTTCTAC
CTTTGCTTGGCCAATTCTTTCATTTATCATGTCAACTTGTCAAGCTTCAAGATTTTAGCCAGAGTAGGAATGAATGGCTT
CACTTTGATGCCTTTAAATGTCATTCAGCTAACACAAGCGACCCCGTAGAAGATGGAATAATGTTTTCCCCGCCTTGCCC
CCGTCCCAATGGCGCGTCTAGCCTCGCCGGAGAGCGTGTGGAGGTGTGTCTTCATCTGATCCAGTGGGGTTCGGCCGGCG
TTTGTCTTCGGTGGATCCGCTTGGATACAGTC--------------------------GTCGTTCGTATGCGTCTGTGTG
TTTGTCTGCAGATTAGATCCTTCCAATCTACGCTTTTCTTCATCGACGAC-GTTGCTGTTCTGGTGAGATGGTCCTATGC
GGCCTTAGCACGAGACTTCCCGACTATTTACTACAAAAAATGTTTGCCCGGCTTCGATGAGGGAGGGGCGATGACGGCGA
CGTGCCTTCGGTTCGCTCCAGTGAATGTAGCCTTCAACCACCAAAACCAACGTTCATAAAACAAACTAAAGTTTAATTCT
ATGAGAAGGTGAATGAACGAGAGGCATATACAA--TTTTTCTGTTGTGGCATGGGCTCGTTTCCCTTCAAAATATCTTAG
CATTTGCATTCACTT
>SNPs
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--------------------------------------------------S-------------------------S-S-
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-----------------------------------------------------------------------S--------
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-------------S--SSSSS-SSS-------------------------------------------------------
-----------------S-----------------------------------S--------------------------
--------------------------S-----------------------------------------------------
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----------S-----------------------------------------------------------------S--S
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----------------------------------------------------------------S---------------
-S------------------------------------------------------------------------------
--------------S-----------------------------------------S-----------------------
---------------------------------------------------------------------S----------
-------------------------------------------------S------------------------------
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-----------------------------------------S--------------------------------------
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-----------------------S--------------------------------------------------------
---------------------------S--------------------------------------------------S-
--------------------------------------------------------------------------------
------------------------------------S--SSSS-------------------------------------
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---------------------------------------------------------------S----------------
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---------------------------------------------------------------S---S------------
---------------------------S------------------------------S---------------------
--------------------S-----------------S------------------------------S----------
-S-----S----S--------------------------------------------S----S-----------------
------------------------SSSSS---SSSSSSSSSSSSSSSSSSSSSSSSSS----------------------
--------S--S----------S-----------------S---------S---------------S---------S---
-S--------S---------S---------SS----------------S------------------S--------S---
--SS--------------------------------------------S----S--------------------------
----------------------------------S------------------------------------S--------
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>forward_891
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------------------------------------------------------------------------CTCCCAAC
ATCTCCGCACC---------------------------------------------------------------------
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>reverse_2673
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--------------------------------TTCGGTGGATCTGCTTGGAT----------------------------
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