>input_sequence_65115
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---------------------------------------------ATGGGGGAGGAGAGGATGACGGCGAAGCCTGAGGC
CGTCGAGCTGCCAGGATTTGTGATGAGCGCCGACGAGGCGGAGCGCGCGGCCGCGGCGGCCGGGGTGGAGACGGTGGAGG
ACCTGCTTCCCCTGCTGATCCCTTCGGCGATGCGGCGCGCGCGCCCCCCGATCTCGCGGTTCCCCGTGGGCGCCGTCGGG
CTGGGCGAGAGCGGGCGCGTTTACGCCGGCGTGAACCTCGAGTTCCTGGGCGCCCCTCTCTCCCAGGTGGTCCACGCCGA
GCAGTTCCTCATCGCCAACGCCGCCGCCGCCGGGGAGCCCGCGCTCCGCGCCATCGCCGTCTCCCACATGCCCTGCGGCC
ACTGCCGGCAGTTCCTCCAGGAGATCCGCGGCGCCGCCGGGATCCGCATCCTGGTGACGTCCGACGCCGCTGACGGCTGC
GCGGCTGAGTGGCGCACGCTGGCATCGCTCCTGCCCCGCCCATTCGGTCCCCACGACCTCCTCCCCAAGGACGCCCCCCT
CGTCCTCGAGCCGCACGACAACCGCCTCGGCGATCCCGTTGACGCCGTCGCCAATGGCTTCGCCGCCGACGACCTGGAGG
GGCGCCTGAAGGATGCCGCGGAGGCGGCGGCGCGTGCGGCGCACGCGCCGTACAGCGGCTGCCCGTCGGGCTTCGCGGTG
GCGGACGGCGAAGGGAAGGTGTACGCCGGGGGCTGCTTGGAGTCCGCGGCGTACAACCCGACGCTGGGTCCCGTGCAGAC
GGCCATCATTGCGATGATTGCCGCCGGAGGCGGCTCCGCTGGCGATGTGGTGGCGGCGGCGCTGGTAGAGAAGGATGGGG
CGGTGGCGGCGCAGGAGGCGACGGCCAGGGTCTTCCTGGCCGCTGTGGCGCCGCAGGCGAGCTTCCACGTGTACAAGTAC
AGGTCGTCCGATGTGTGA--------------------------------------------------------------
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>chr3B_1_TraesCS3B01G278200
CAATGGGGGCCCCGGAGTGGGTTTCTCGGCTCCCATTTCGGTTTAATGTCAGTAGATGGACAAACGGATAGCCCCTTTGA
ATGCGGTAGATATTCACCCCGTTCTATCAAATCACGTCGCTCGGACATTAAACATGTGGGAAGACCGAAAC-ATGATGCG
GCCGATGCTCTCAGCGGGCGTGCCGCTTTAATGCCGACATTAATGAAAGGTCGTGTCTT-TCTGAGCCTACATGAATACG
CGGTGCCGCTGACGCTCTGGAGCAGCCCTGATCGGCAACCACTTCGACTTCACAAATTAAGGCCCTGAGCGGCGACTGCT
TCCACTTCTGTAATCGTACTTTGCAAATTTTAATTAGACTGAGATACAAGATTTAACAGGTCAAGGTCTATGAAATCCAA
CGCCTTCCACTTCTCGTTTGGTACAGGCTAACAATTGCGGGATCATTGGGATCAGCTGATTAAACATCATCTGTCATGAT
TGACCAATATCTTGAAACATTGTTCTTTTTTTCTTGAGCACATGTAAATAGCTTTCAGAAAAGAAATGGATTAAGATCGA
GTTGGCTAGCTTGATTTGAAACCATCTGATGACATATTGTCTCAGACTTAATTTTGTGATCCTCAGCTAGCAATACTTGT
GTGGCCAC-TGCCATCCAAACCACTTCAGTTCAGCTGCAAAAGACTATCTGTGCAGCGGCCATGACACGTCCAGCGGACG
ATAATTATCCGTGCCCATCGTTGCAAAAGACTGAAAAGAGAGAAAGGAAGCGAAGCCCTG-GCAAAAGAG-AAAAACAGC
AACAACAAAGCACACGGATGTGTGTCCGTTATAAATACCCACACGCTACCACCACCGAGTTTCCCCCCTCCCCCGCTCTT
CCTCTCCTCCACTCTTTGAGGAAACATCCAAGTGCTCCCTCCATCTCAAGAGGCGACGTACGATTATACAAGGTAGAAAA
AAAAAATCATAGAGTGACAACACAGTTTCGAGTTAGATCTGAGCAATGGGGGAGGAGAGGATGACGGCGAAGCCTGAGGC
CGTCGAGCTGCCAGGATTTGTGATGAGCGCCGACGAGGCGGAGCGCGCGGCCGCGGCGGCCGGGGTGGAGACGGTGGAGG
ACCTGCTTCCCCTGCTGATCCCTTCGGCGATGCGGCGCGCGCGCCCCCCGATCTCGCGGTTCCCCGTGGGCGCCGTCGGG
CTGGGCGAGAGCGGGCGCGTTTACGCCGGCGTGAACCTCGAGTTCCTGGGCGCCCCTCTCTCCCAGGTGGTCCACGCCGA
GCAGTTCCTCATCGCCAACGCCGCCGCCGCCGGGGAGCCCGCGCTCCGCGCCATCGCCGTCTCCCACATGCCCTGCGGCC
ACTGCCGGCAGTTCCTCCAGGAGATCCGCGGCGCCGCCGGGATCCGCATCCTGGTGACGTCCGACGCCGCTGACGGCTGC
GCGGCTGAGTGGCGCACGCTGGCATCGCTCCTGCCCCGCCCATTCGGTCCCCACGACCTCCTCCCCAAGGACGCCCCCCT
CGTCCTCGAGCCGCACGACAACCGCCTCGGCGATCCCGTTGACGCCGTCGCCAATGGCTTCGCCGCCGACGACCTGGAGG
GGCGCCTGAAGGATGCCGCGGAGGCGGCGGCGCGTGCGGCGCACGCGCCGTACAGCGGCTGCCCGTCGGGCTTCGCGGTG
GCGGACGGCGAAGGGAAGGTGTACGCCGGGGGCTGCTTGGAGTCCGCGGCGTACAACCCGACGCTGGGTCCCGTGCAGAC
GGCCATCATTGCGATGATTGCCGCCGGAGGCGGCTCCGCTGGCGATGTGGTGGCGGCGGCGCTGGTAGAGAAGGATGGGG
CGGTGGCGGCGCAGGAGGCGACGGCCAGGGTCTTCCTGGCCGCTGTGGCGCCGCAGGCGAGCTTCCACGTGTACAAGTAC
AGGTCGTCCGATGTGTGATGCGCGCCTCCGGACCCTCTCTGGGGTGGGGAGAGATCGGACGAGATAATGTTCATAATCTT
CACGAA----TAATATGACGAGAAATAATCTTGTGCAGATGGGTGAGCTGTAAATTCCACATGGCGATCGTGGTTTGCTG
ATCGGACACCAAGAGCTGGGACCTACTTATTACCATTCTTGTATTCATGTGTGTATTATTATATGAGAAAAATATATATT
ACTCGTA---CGTAGTAAAAATCCTCTAAACGATGG-ATGCCGTAATAAACAGGTGGAGTATTTCTTGGATGGAAGTAAC
GTGTTGCTTCTCCTTCCCCGTCTCTTTGCTCTACGTCGTTGTTTCAACCAATTACACACTA-------------------
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---------------------------CAGCTCACGACTTGGGAGTAGATATATAGGATACATAAAAAAAAAATTAGAGC
TCGTGCTGCACGCACTGCGGGG------CCTGTTGTGGACACCGCTGATTATCCAGCCAATCAGGCAATCGGCCCATTTC
TTCCCTGCAAGTCTCAAACACATGATCGATC---CGATCGCTTTACAAACTTCTCTTGGTGGGGCTGAGCTGTAGGTGGG
TTAGTTGCCACCGAGCAAAGCAAGGGTATATATGTAGATCAGCGTTAGATTAGGTAGAAAATCCAAACGTGCAATCACAG
CCC---AAGTCTATTCCTGATCAGATGACGCAAAGTGCAATCATCCAATCATAGTCAAGTCTGCCTTACATGAATATCGT
AGCAATTCCGA---TATCATTTTCCCGGGAG-AAAGTAGATTGCTGACCGCCCTTAGATTCTTAAACAACGCAAGAATGA
GTGTCCCGGAGAAAACAACAACCTGCGCATAGATAGCGATGGTGTACGAGCTCTGCATTAAATCAGTCACAACAGACATT
TCTTAAACAAATTAGCAGCCACCGGATTTTGACTGCGATCCCATCTTTGATCTCGGCTGTGGGTGTTCAGCGTCATTGTC
TTGTCCCGACGG------ACCTAAATGATTCTGCGTCCAGACCCAAGCCACGCC
>chr3D_1
CAATGAGGACGCCGGAGTGGGTTTCTCTGTTCGTGTTCTGGTTTAATGTCAGTAGGTGGACAAACGAGTAGCCCATTTGA
ATGCAATAGATATCCACCCCGTCCCATCAAATCACATCGCTCCAACTTTAAGCATATGTGGAGACCGGAACAATGATGCG
GTAGATGCTCTCAGGAGGCGTGCCGCTTCAATGCCGACACTAGTAAAATGTCGTGTCTGCTCTGAGGCTACATGAATGCG
CCGCGCCG--------CTGGAGCGGCCCTGATCGGCAACCGCTTCGACTTCGCAAATCAAGGCCCTGAGCGGCGATCGCT
TCCACTTCTGTAATCGTACTTCGCAAATTTTAATTAGACTGAGATACAAGATTTAACAGGTCAAGGTCCATAAAATCCAA
CGCCTTCCACTTCTCGTTTGGTACAGGCTAGCAATTGCGGGATCCTTTGGATCAGCTGATTAAACATCATCTGTCACGAT
TGACCAATATCTTGAAACATTGTTCTTTTTTTTAGCA-CACATGTAAATAGCTTTCAGAAAAGAAATGGATTAAGATCGA
GTTGGCTAGCTTGATTTGAAACCATCTGATGACACATAGTCTCGGATTTAATTTTGTGATCCTCAGCTAGCAATACCTGT
GTGGCCACTTGCCATCCAAACCACTTCAGTTCAGCTGCAAAAGATTGCAG----------CATGACACGTCCAGCGGACG
ATAATTATCCGTGCCCATCGTTGCAAAAGACTGAAAAGAGAGAAAGGAAGCGAAGCCCTGCGCAAAAGAG-AAAAACAGC
AACAACAAAGCACACGGATGTGTGTCCGTTATAAATACCCACACGCTACCACCACCGAGTTTCCCCCCT-CCCCGCTCTT
CCTCTCCTCCACTCTTTGAGGAAACATCCAAGCGCTCCCTCCATCTCAAGCGGCGACGTACGATTACAAGGTAG-GAAAA
AAAAAATCATAGAGTGACAACACAGTTTCGCGTTAGATCTGAGCAATGGGGGAGGAGAGGATGACGGCGAAGCCTGAGGC
CGTCGAGCTGCCAGGATTTGTGATGAGCGCTGACGAGGCGGAGCGCGCGGCCGCGGCGGCCGGGGTGGAGACGGTGGAGG
ACCTGCTGCCCCTGCTGATCCCTTCCGCGATGCGGCGCGCGCGCCCCCCGATCTCGCGGTTCCCCGTGGGCGCCGTCGGG
CTGGGCGAGAGCGGGCGCGTGTACGCCGGCGTGAACCTCGAGTTCCTGGGCGCCCCTCTCTCCCAGGTGGTCCACGCCGA
GCAGTTCCTCATCGCCAACGCCGCTGCCGCCGGGGAGCCCGCGCTGCGCGCCATCGCCGTCTCCCACATGCCTTGCGGCC
ACTGCCGGCAGTTCCTCCAGGAGATCCGCGGCGCCGCCGGGATCCGCATCCTGGTGACCTCCGACGCCGCCGACGGCTGC
GCGGCCGAGTGGCGCTCGCTGGCGTCGCTCCTGCCCCGCCCCTTCGGCCCCCATGACCTCCTCCCCAAGGACGCCCCCCT
CGTCCTCGAGCCGCACGACAACCGCCTCGGCGATCCCGTTGACGCCGTCGCCAATGGCTTCGCCGCCGGCGACCTGGAGG
GGCGCCTGAAGGATGCCGCGGAGGCGGCGGCGCGCGCGGCGCACGCGCCATACAGCGGGTGCCCGTCGGGGTTCGCGGTG
GCGGACGGCGAGGGGAAGGTGTACGCCGGGGGCTGCCTGGAGTCCGCGGCGTACAACCCGACGCTGGGCCCCGTGCAGAC
GGCCATCATTGCGATGATTGCCGCCTCCGGCGGCTCCGCCGGCGATGTGGTGGCGGCGGCGCTGGTGGAGAAGGATGGGG
CGGTGGCGGCGCAGGAGGCGACGGCCAGGGTCTTCCTGGCCGCTGTGGCGCCGCAGGCGAGCTTCCACGTGTACAAGTAC
AGGTCGCCCGATGTGTGATGCGTGCCTCCGGACCCTCTCTGGGGTGGGGAGAGATCGGACGAGATAATGTTCATAATCTT
CAGGAA----TAATATGACGAGAAATAATCTTGTGCAGATGGGTGAGCTGTAAATTCCACATGGCGCTCGTGGTTTGCTG
ATCGGACACCAAGAGCTGGGGCCTAC---TTACCATTCTTGTATTCATGTGTGTATTATCATATGAGAAAAATATATATT
ACTCGTACTACGTAGTAAAAATCCTCTAAACGATGGGATGCCGTAATAAACAGGTGAAGTATTTCTTGGATGGAAGTAAC
GTGTTGCTTCTCCTTCCCCATCTCTTG---CTCTAAGGGCATCAACAATGCAGAGCGCTTACAGAGGCGCTTAAGCGAGA
TATTTTTGATTTTTTTTCACTTAGCGTCTTTGTTAGCATCGGGCTTCACAGCGCTAACAGAAATCTATAGGCGCTAGAGG
AATTAAAAAAGGAAATAAAGGTGTACGCTGGCGCCCATCCTTCCAACGCGTAGGTGACCAAGCGCCTGCCCAACAGAAAA
CAGATATACGCCTGCATCAGCCTTATTGAGCTCACGAAGGAGCGGCAAAGAAGCC-------------------------
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------------------------ATCGATC---CGATCGCTTTACAAACTTCTCTGGGTGGGGCTGAGTTGTGGGT-GG
TTAGTTGCCACCGAGCAAAGCAAGGGG-TATATGTAGATCAGCGTTAGATTAGGTACAAAATCCAAACGTGCAATCACAG
CCC---GAGTCTATTCCTGATCAGATGACGCAAAGTGCAATCATACAATCATAGTCAAGTCTGTCTTATAGGAATATCGT
AGCAATTCCGA---TATCATTTTCCCGGAAGAAAAGTAGATTGCTGACCACCCTT-GATTCTTAAAAT------GAACGA
GTGTCCCGGAGAAAACAACAACCTGTGCGTAGATAGCGATGGTGTACGAGCTCTGCATTAAATGAGGCACAACAAACATT
TCTTAAACAAATTAGCAGCCACCGGATTTTGACTGCGATCTCATCTTTGATCTCGGCTGTGGGTGTTCAGCGTC-----C
TTGTCCTGACGGACCTAAACCTAAATGATTCTGCGTCCAGACCCAAGCCAC---
>chr3A_255
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----------------CTGGAGCGGCCCTGACGGGCATCTGCTTCGACTTCGCAAATCAAGGTCCTGAGCGGCGACCGCT
TCCACTTCTGTAATCGTACTTTGCAAATTTTAATTAGAATGAGATACAAGATTTAACAGGTCAAGGTCCATAAAATCCAA
CGCCTTCCACTTCTCATTTGGTACAGGCTAGCAATTGCGGGATCCTTGGGATCAGCTGATTGAACATCATCTGTCATGAT
TGACCAATATCTTGAAACATTGTTCTTTTTTTTAGCA-CACATGTAAATAGCTTTTAGAAAAGAAATGGATTAAGATCGA
GTTGGCTACCTTGATTTGAAACCATCTGATGACATATTGTCTCGGATTTAATTTTGTGATCCTCAGCTAGCAATACTTGT
GTGGCCACTTGCCATCCAAACCACTTTCGTTCAGCTGCAAAAGATTGCA----------CCATGACACGTCCAGCGGACG
ATAATTATCTGTGCCCATCGTTGCAAAAGACTGAAAAGAGAGAAAGGAAGCGAAGCCCTG-GCAAAAGAGAAAAAACAGC
AACAACAAAGCAGACGGATGTGTGTCCGTTATAAATACCCACACGCTACCACCACCGAGTTTCCCCC-TCCCCCGCTCTT
CCTCTCCTCCACTCTTTGAGGAAACATCCAAGCGCTCCCTCCATCTCAAGCGGCCAAGTACGATTATACAAGGCAGG-AA
AAAAAATCATAGAGTGACAACACAGTTTCGAGTTAGATCTGAGCAATGGGGGAGGAGAGGATGACGGCGAAGCCCGAGGC
CGTCGAGCTGCCAGGATTTGTGATGAGCGCCGACGAGGCGGAGCGCGCGGCCGCGGCGGCCGGCGTGGAGACGGTGGAGG
ACCTGCTGCCCCTGCTGATCCCTTCCGCGATGCGGCGCGCGCGCCCCCCGATCTCGCGGTTCCCCGTGGGCGCCGTCGGG
CTGGGCGAGAGTGGGCGCGTCTACGCCGGCGTGAACCTCGAGTTCGTCGGCGCCCCTCTCTCCCAGGCGGTCCACGCCGA
GCAGTTCCTCATCGCCAACGCCGCTGCCGCCGGGGAGCCCGCGCTCCGCGCCATCGCCGTCTCCCACATGCCCTGCGGCC
ACTGCCGGCAGTTCCTCCAGGAGATCCGCGGCGCCGCCGGGATCCGCATCCTGGTGACCTCCGACGCCGCCGACGGCTGC
GCGGCCGAGTGGCGCTCGCTGGCGTCGCTCCTGCCCCGCCCCTTCGGCCCCCACGACCTCCTCCCCAAGGACGCCCCCCT
CGTCCTCGAGCCGCACGACAACCGTCTCGGCGATCCCGTTGACGCCGCCGCCAATGGCTTCGCCGCCGGCGACCTGGAGG
GGCGCCTGAAGGATGCCGCGGAGGCGGCGGCGCGCGCGGCGCACGCGCCGTACAGCGGGTGCCCGTCGGGGTTCGCGGTG
GCGGACGGTGAAGGGAAGGTGTACGCCGGGGGCTGCCTGGAGTCCGCGGCGTACAACCCGACGCTGGGCCCCGTGCAGAC
GGCCATCATTGCGATGATTGCCGCCTCCGGCGGCTCCGCCGGCGATGTGGTGGCGGCAGCGCTGGTAGAGAAGGAGGGGG
CGGTGGCGGCGCAGGAGGCGACGGCCAGGGTCTTCCTGGCCGCTGTGGCGCCGCAGGCGAGCTTCCACGTGTACAAGTAC
AGGTCGTCCGATGTGTGATGCGCAGCAGCA-----------------GGCGAGATCGGACGAGATAATGTTCATAATCTT
CAAGAAAGAATAATATGACGGGAAATAATCTTGTGCAGATGGGTGAGCTGTAAATTCCACATGGCGCTCGTGATTCGCTG
ATGGGACACCGAGAGCCGGGGCCTAC---TTACCATTCTTGTGTTCATGTGTGTATTATTATGAGG----AAAATATAAT
ACTCCTAGA----AGTAAAAATTCTCTGAACGG-----TGCCGTAATAAACAGGTGGAGTATTTCTTGGACGGAAGTAAT
GCGTTGCTTCTCCTTCCCCGTCTCTTT---CTACGTCGTTGTTTGAACGAATTACACACTA-------------------
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---------------------------GAGCTCACGACTCTTG----------TAGGATACATAAAAAATACTCTAAAAA
AATAGCTAGAATGAAGTGCATCGCGGGACCTGTTGTGGTCACCGCCGATTATCCAGCCAATCAGGCATTTGGCCCACTTG
TTCCTTGCAAGTCTCAAACACACGATCGATAGATCGATCGCTTTACGAACTTCTCTTGGTGGGGCTGAGCTGTAGGC-AG
TTGGTTGCCACGGAGTACAGCAAGGGTG--TATGTATATCAGCGTCAGATTAGGTAAGAG-TCCAAACGTGCAATCACAG
CAGCCAAAGTCTACTCCTGATTAGATGACGCAGAGGGCAATCATACAATCATAGTCAAGTCTATCTTAGAGGAATACCGT
AGCAATTCCGATAGTATCATTTTCCCGGAACAAAGT--------------------------------------------
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>SNPs
-----S--S-S----------------S-S--SSS--SS----------------S----------SS------S-----
----SS-------S--------S-S----------S------SS--S----S---S--S-S------S------------
-SS-----------SS------------S----------S--S-S---S---------S-------S----------S--
-S-S----SSSSSSSS-------S----------------S----------S-----S------------------S---
--------------------------------------------------------------------S--S--------
------------------------------S-------------S-----------------------------------
--------------------------------SSSS-S------------------------------------------
-------------------------------------------S--S---------------------------------
--------------------------------------------S-SSSSSSSSSSSSS---------------------
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--------------------------------S-----------------S----------------------S------
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-------S-----------------S------------------------------------------------------
--------------------S-----------------------------------------------------------
------------------------S-------------------------------------------------------
----------------------------------------------------------S-----------S---------
-----S---------S-------S-----------------S-----S--------------------------------
--------------------------------------------------------------------S-----------
----------------------------------S-----------------------S-----------S---------
------------------------------------S-------------------------------S-----------
-------------------------SSS-----------S----------------------------------------
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--S---------------------------------------------------------------S-------------
--------------------S-----SSS---------------------------------------------------
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---------------------------SSS--------------S---S-------------------------------
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---------------------------S-----------SS--S-S-S-S-SS----------------S-SSS--S-SS
SSSS---SS-SSS-SSSSSSSS----------------S------S---------------------S-S------S--S
----S-----------------S------------------------------------------------------S--
---------------------------S----------------------------S-----------------------
--------------------------------------------S------------------S----S-S---------
----------------------------S--------------------S-----S----------SSSSSSSS---S--
-------------------------S--S----------------------------------S--S-------S-----
----------------------------------------S---------------------------------SSSSS-
------S--------------------------------------------SSS
>forward_75
-------------------------------------------------------ATGGACAAACGGATAGCCCC-----
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>reverse_2067
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------------------------------------------------------------------ATCGTGGTTTGCTG
ATCGGA--------------------------------------------------------------------------
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