>input_sequence_65050
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-------------------------------------------------------------------ATGGTGTCCGTCT
GCCCCATGGCGAGCGCTCGATCGCGTTTCATCCTCCTGCTCGTCTTCCTCGCCGCTGCCTCGTCCCCGGCCTCGGCGTGC
GACCGGTGCGTGCGCCGGTCCACGGCGGCGTACCGCGCCTCCTCGCCCGCCCTCGACAATGGTGCGTTTCGCTTCCGTTT
GTTACGTTTTGTTGTTCGTGGTTTGGTTGATTGATGACTGATTCAGTTTCGCTCTGCGTGCGTGCAGCCGGCTCCTGCGG
GTACGGCTCCCTGGCGGCGACCTTCAACGGCGGGCTCCTCGCCGCCGCGAGCCCCGCGCTGTACAGGGGGGGCGTCGGCT
GCGGCGCGTGCTACCAGGTCCGGTGCACGGACGCCGAGCTCTGCAGCGCCTCGGGCGCCACGGTGGTCGTGACGGACCAG
GCGCGCGGCACGGCCACGAACCGCACCGACCTCGTGCTGGGCAGCGCGGCGTACGCGGCCATGGCCTTGGGCGGCGGGGG
CACGGCCGCCGCGCGGCGGCTGAGGGAGCGC------------------------CGCGCCGTGAGCGTGGAGTACAAGC
GGGTGCCCTGCGAGTACGCGCGCCGCCGCAACCTGTCGGTGCGCGTGGAGGAGCGCGCGCCGCCGGGCGGCCTGACGATC
CGGTTCCTGTACCAGGGCGGGCAGACGGACATCGTGGCGGTGGACGTGGCGGCGGCCGGGTCGTCGAGCTGGCGGTCCAT
GACGCGGGAGCGCGGCGGGCCGGCGTGGAGCACGGGCCAGGCGCCCGCGGGGCCGCTGCAGCTCCGGATGGTGGTCACCG
GCGGGTACGACGGGAAGTGGGTGTGGGCCGAAGGGGAGGTCCTCCCGCGGCGGTGGGCCGCCGGCCGGGTGTACGACACC
GGGGTGCAGATCGCCGACGTCGCGCTGGAGGGGTGCTCCCCCTGCGACGCCCGAGAGTGGAAGTGA--------------
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>chr1A_1_TraesCS1A01G203200
TCCTTTCTCTTCTCTTTCCTTCACTTCATGTCAGCAAAAAAATAATATTTTAACTCTTATAGCATGCTTATATTAATTTA
TTGTGCTTGCTCTTAAACGCCTCCTCCTTGATCGGCAAAGGAGTTAATTGTTTCCTCAGGAATTACTGCATTCCCTTTCG
AGGTAACAGCAAGTGGAAACCCTCTCGAGGCAGTGTATATGAAAGTAAAGAAACACACGCGTGTGCACAAAACAGCATTC
ACACATGCCCTTACCTGGCCACGTGGCAGGCTGCCCGGCGATGGGACGTGGTTAGGCTGGTTGTAATGTGAGTATTATAG
ATAGTATCATGCATACCAATTAGTCAAATTTGATGATGTGTCATAGAATTAAATGAAGAAAGAGAGAATTGAGTATCATA
TTATGATACTGTATTATAATAAATATTAGGCTAGTATGTATCATGCATGATAATAAATAAAGTACTACATGATACTAATA
TATGATATCACACACTAGAAAGGTAGTATCATACACTAGTATTGTATGCATAATACTAGCATATGATATCCCCGTTACAA
CCAGCCTTACCGGAGTTTATCCTAGTACAACTTCGAGCAGTTCAAAGAACCACTCGCTGGCGCACCCAGGTTGCGGCACG
CGTCTCCAGGGTCGGTGGCCACCCCAAACTTTTTGCCGCAGCACTTCACCCCCATCCCTGGATCCACCTCACGGCCACGT
GGCCAGCGCGCTTTCCTTCCTCCCTACTGCTCCCAACCGCGTCGGCATTCTGCTGCTGTGTCCCAGGTACGAGACCGCGG
CCGTCCGGTTTCGAGGCTGGCGGCACCCAGGGCCAGCGCCGTTAACTCGTAAACCGCAACCGGCCAACCAGCGTGCGCGC
CGCGTCGGGTATAAAGCTTGGCTCCAGCCCAGCTGCTCGCAAGAATCCATCCTACTCCGTT-------------------
-------------------------------------------------------------------------CTGTCCT
GTCCTGTTCAATCTTCT---------------ACTCCGAGTAACGCCCCCGTCTTCAAGCTCGATCGATGGTGTCCGTCT
GCCCCATGGCGAGCGCTCGATCGCGTTTCATCCTCCTGCTCGTCTTCCTCGCCGCTGCCTCGTCCCCGGCCTCGGCGTGC
GACCGGTGCGTGCGCCGGTCCACGGCGGCGTACCGCGCCTCCTCGCCCGCCCTCGACAATGGTGCGTTTCGCTTCCGTTT
GTTACGTTTTGTTGTTCGTGGTTTGGTTGATTGATGACTGATTCAGTTTCGCTCTGCGTGCGTGCAGCCGGCTCCTGCGG
GTACGGCTCCCTGGCGGCGACCTTCAACGGCGGGCTCCTCGCCGCCGCGAGCCCCGCGCTGTACAGGGGGGGCGTCGGCT
GCGGCGCGTGCTACCAGGTCCGGTGCACGGACGCCGAGCTCTGCAGCGCCTCGGGCGCCACGGTGGTCGTGACGGACCAG
GCGCGCGGCACGGCCACGAACCGCACCGACCTCGTGCTGGGCAGCGCGGCGTACGCGGCCATGGCCTTGGGCGGCGGGGG
CACGGCCGCCGCGCGGCGGCTGAGGGAGCGC------------------------CGCGCCGTGAGCGTGGAGTACAAGC
GGGTGCCCTGCGAGTACGCGCGCCGCCGCAACCTGTCGGTGCGCGTGGAGGAGCGCGCGCCGCCGGGCGGCCTGACGATC
CGGTTCCTGTACCAGGGCGGGCAGACGGACATCGTGGCGGTGGACGTGGCGGCGGCCGGGTCGTCGAGCTGGCGGTCCAT
GACGCGGGAGCGCGGCGGGCCGGCGTGGAGCACGGGCCAGGCGCCCGCGGGGCCGCTGCAGCTCCGGATGGTGGTCACCG
GCGGGTACGACGGGAAGTGGGTGTGGGCCGAAGGGGAGGTCCTCCCGCGGCGGTGGGCCGCCGGCCGGGTGTACGACACC
GGGGTGCAGATCGCCGACGTCGCGCTGGAGGGGTGCTCCCCCTGCGACGCCCGAGAGTGGAAGTGACGCCGCGAT--ACA
CGAATCAACCTTGTACAGTAGAGTCTTTTGCTTTTTGATCTTACTACTCGTGCTAATCCCCTCCCTCCTTTCTTCTTGGA
TAACGATTAACGAAGCGGAATGAATC----GGGTGGAAGAGTCAGACGTGCGGGTGATTGCAACTGGGTCCGGTCCGGCC
TTGCTGATTGATTGCTCTCCACTTGGACTTGGTGGTGGCGGGCAGCTAGCTGAGCTGAGCCTGCGGGAGCAGAGGGGGAG
TAGTGTGCACGATGTGCGGCGCGTCTTCGGTCACCGGTGCGTGCCAACTT-GCGATAGTGTGTGCACTGCACGACGACGG
CCCTGGTCGTCAACGGCGGGTGCCGTGCTCCGCCTTTCGCGCGTGCAGGTTGCA---------------TTTCTGTACTG
GGCAATGGTGACGGGACGGCCCCAA----AGCTAGGCGCGTTTCGTGTGATTCCCGGC------------GTGAT-----
-----CCCTTGCCGTCGTAGGTTGGTTGGGCGATCTGCATGCTGCGCACTGCTCCAATATGCTCGTCGTTCCGGTAACTG
GCATGAGGCAGGGGTAGAGTGATAGGAGCTGTTGTGTCCATTGGTCGGACAAGGTGACCCAAGTGATTTATTTTTGAAAC
CGCCGCAAAAGATTTGGTTCAGCTATTAATTAAGCAAC--AGGATTGTCCTGTTAATTAACAGAAAGCACGGTGAACACC
ATCACAAAACCGTTAAACGGCATTACACATGATGTCCGAGAAAGAAGAACAAAACTGATAACGAGAATTTCAGTATAATG
AGCATAATGGTGACTCAGGAGAATATCGATACATCCGAGGTTTTTTG-------------AAGTATCACAAAGGAAAGGA
AACATCACATGATAACCAAAGATTCACTCTAATAGCATTCGTGTGCTCATCAGGATTGACATGGACGTCCACGGTCCCGC
TGTCGGTCTCATAAGAATTGATATGGACGTTCACGGTCCTGCTGTCGGTTATTGGACGAACGGTTTCATACATATCTGTG
AGTTACCGA
>chr1D_92
CTC-----------------------------------------------------------------------------
--------------AAACGCCTCCTCCTTGATCGGCAAAGGAGTTAATTCTTTCCTCAGGAATTACTACCTTCCCTTTCG
AGGTAACAGCAAGTGGAAACCCTCTCGAGGCAGTATATATAAAAGTAAAGAAACACACGCGTGTTCACAAAACGGCAATC
AAACGTGCCGTTACCTCGCCACGCGGCAGGCTGCCCGCCGATGGGACGTGG-----------------------------
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------TTACCGGAGTTTATCCTAGTACAACTTCGAGCAGTTCAAGC-ACCACTCGCTGGCGCGCGCAGGTTACGGCCCG
CGTCTCCAGGGTCGGTGGCCACCCCAAACTTTTTGCCGCAGCACTTCACCCCCATCCCTGGATCCACCTCACGGCCACGT
GGCCATCGCGCTTTCCTTCCTCCCTACT---CCCAACCGCGTCGGCATTCTA---CTGTGTCCCAGGTACGAGACCGCGG
CCGTCCGGTTTCGAGGCTGGCCGCACCTAGGGCCAGCGCAGTTAACTCGTAAACCGCAACCGGCCAACCAGCGTGCGCGC
CGCGTCGGGTATAAAGCTTAGCTCCAGCCCAGCTGCTCGCAAGAATCCATCCTATTCTCTT-------------------
-------------------------------------------------------------------------CTCTCCT
GTCCTGTTCGATCTTCTAGCAA---GTAGACCACTCCGAGTAACGCACCCGTCTTCAAGAATCAAGCCCCA---------
--CCGATGGCGAGCGCTCGATCGCGTTTGATCCTCCTGCTTGTCTTCCTCGCCGCTGCCTCGTCCCCGGCCTCGGCGTGC
GACCGGTGCGTGCGCCGGTCCAAGGCGGCGTACCGCGCCTCCTCGCCGGTCCTCGACAATGGTGCGTTTCGCTTCCGTTT
GTTACGGTTTGTTGTTCGTGGTTTGGTTGACTGATTCGGTTTAGCTC-----------TGGGTGCAGCTGGCTCCTGCGG
GTACGGCTCCCTGGGGGCGACCTTCAACGGCGGGCTCCTCGCGGCCGCGAGCCCCGCGCTGTACAGGGGGGGCGTCGGCT
GCGGCGCGTGCTACCAGGTCCGGTGCACGGACGCCGCGCTCTGCAGCGCCGCGGGCGCCACGGTGGTCGTGACGGACCAG
GCGCGC---ACGGCCACGAACCGCACCGACCTCGTGCTGAGCGGCGCGGCGTACGCGGCCATGGCGCGGGGCGGCGGGGG
CACGGCCGCCGCGCGGCAGCTGAGGGAGCGGCGCGCCGTGGGCGTGAGGGAGCGGCGCGCCGTGGGCGTGGAGTACAAGC
GGGTGCCCTGCGAGTACGCGCGCCGCCGCAACCTGTCGGTGCGCGTGGAGGAGGGCGCGCCACCGGGCGGCCTGACGATC
AGGTTCCTGTACCAGGGCGGGCAGACGGACATCGTGGCGGTGGACGTCGCGGCGGCCGGGTCGTCGAGCTGGAGGTCCAT
GACGCGGGAGCGCGGCGGGCCGGCGTGGAGCACGGGCCAGGCGCCGGCGGGGCCGCTGCAGCTCCGGATGGTGGTCACCG
GCGGGTACGACGGGAAGTGGGTGTGGGCAGAAGGGGAGGTCCTCCCGCGGCGGTGGGCCGCCGGCCGGGTGTACGACACC
GGGGTGCAGATCGCCGACGTCGCGCTGGAGGGGTGCTCCCCCTGCGACGCCCGGGAGTGGAAGTGACACTTGCAGAGACA
CGAATCCCGGTTGTACAGTAGAGTCGTTTGCTTTTGATCTTG----CTCGTGCTAATCCCCTTCCTCCTTTCTTCTTGGA
TGACGATTAACGAAGCGGAATGAATC----GGGTGGAGGAGTCAGACGTGCGGTTGCAACTG---------GGTCCGGCC
TTGCTGATTGATTGCTCCCCACTTGG---TGGTGGTGGCGGGCAGCTAGCTGAGC-----CTGCGG-------GGGGGAG
TAGGGTGCACGATGTGCGGCGCGTCTTTGGTCACCGGTGCGTGCCAACC-TGCGATAGTGCATGCATTGCACGACGACGG
CCCTGGTCGTCAACGGCGGGTGCCGTGCTCCCCCTTTCGCGCGTGCAGGTTGCA---------------TTTCTGTACTG
GGCAATGGT-----GACGGCCCCAAAGGTAGCTAGGAGCGTTTCGTGTGATTCCCGGC------------GTGATGCCCG
GCGTTCCCTTGCCGTCGTAGGTTGGTTGGGCGATCTGCCTGCTGCGCACTGCTCCAATATGCTCGTCGTTCCGGTAACTG
GCATGACGCAGAGGTAGAGTGATAGGAGCTGTGGTGTCCATTGGTCGGACAAGATGACCCAAGTGATTTATTTTTGAAAC
CGCC-CAAAAGATTTGGTTCAGCTGTTAATTAAGCAGAAGAGGATTGTCAGGTTAATTCACAGAAAGCATGGTGAACACC
ATCAC-AAACCGTTAAATGGCAT-ACACGTGATGTCCAAGAAAGAAGAACAAAATCGGTAAAGAGGATTTCGGTATAATG
AGCATAGTGTTGACTCAGGAGGATACCGGTGCATCCGACGTTTTTTG-------------AAGTATCACAAAGAAAAGAG
AACATCACATGATAACTAAAGGTTTACTCGAATATCATTCATGTGCTCATAAGGGTTGATATGGACGTCCACGCTCCCGC
TGTCGGTC------------------------------------------------------------------------
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>chr1B_93
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------------TTAAACGCCTCCTCCTTGATCGGCAAAGGCGTTGATTCTTTCCTCAGGAATTACTACCTTCCCTTTGG
AGGTAACAGCAGGTGG-----------------------------------------------------AAACGCGAATC
AACCT------------------------------------------GTGGTTGAGTTGGTTAGGTGGACAGTGGTATCC
CCAACCCACCAG--------------------------------------------------------------------
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-------------------GGTTCAAATCCTGGTGCTCGCATTATTCCTGGATTTATTTCAGGATTTCTGGCGATGCGCT
TTCAGTGGGAGGAGACGTTTCCGTCGACGACGAGGCGCCTCTCTCGGAGGTGTGCGTGTGTGCGTGTTCTGCCCTGTCCT
GTTCTGTTCGATCTTCTAAGAAGTTGTAGACCACTCCGAGTAACGCACCCGTCTTCAAGC------CCCCA---------
--CCGATGGCGAGCGCTCGATCGCGTTTGATCATCCTGCTCGTCTTCCTCGCCGCTGCCTCGTCTCCGGCCTCGGCGTGC
GACCGGTGCGTGCGCCGGTCCAAGGCGGCGTACCGCGCCTCCTCGCCCGCCCTCCACAATGGTGCGTTTCGCTTCCGTTT
ATTACGGTTTGTTGTTCGTGGTTCGGCTGATTGATTCGGTTTCTCTC-----------TGCGTGCAGCCGGCTCTTGCGG
GTACGGCTCCCTGGCGGCGACCTTCAACGGCGGGCTCCTCGCCGCCGCGGGCCCGGCGCTGTACAGGGGAGGCGTCGGCT
GCGGCGCGTGCTACCAGGTCCGGTGTACGGACGCCGCGCTCTGCAGCGCCGCGGGCGCCACGGTGGTCGTCACGGACCAG
GCGCGCGGCACGGCCACGAACCGCACCGACCTCGTGCTGAGCGGCGCGGCGTACGCGGCCATGGCCCTGGGCGGCGGGGG
CACGGCCGCCGCGCGGCAGCTGAGGGAGCGGCGCGCC------------------------GTGGGCGTGGAGTACAAGC
GGGTGCCCTGCGAGTACGCGCGCCGCCGCAACCTGTCAGTGCGCGTGGAGGAGGGCGCGCCC---GGCGGCCTGACGATC
AGGTTCCTGTACCAGGGCGGGCAGACCGACATCGTGGCGGTGGACGTCGCGGCGGCCGGGTCGTCGAACTGGAGGTCCAT
GACGCGGGAGCGCGGCGGGCCGGCGTGGAGCACGGGCCAGGCGCCGGCGGGGCCGCTGCAGCTCCGGATGGTGGTCACAG
GCGGGTACGACGGGAAGTGGGTGTGGGCCGAAGGGGAGGTCCTCCCGCGGCGGTGGGCTGCCGGCCGGGTGTACGACACC
GGGGTGCAGATCGCCGACGTCGCGCTGGAAGGGTGCTCCCCCTGCGACACCCGGGAGTGGAAGTGACAGTGC---AGACA
CGAATCCCGCTTGTACAGTAGAGTCTTTTGCTTTT-GATCTTACTACTCGTGCTAATCCCCCCTCTCCTTTCTTCTTGGA
TAACGATTAACGAAGCGAAACGAATTGGTGGGTTGGAAGAGTCAGACGTGCGGTTGCAACTG---------GGTCCGGCC
TTGCTGATTGAGCTCTCCCCACTTGG---TGGTGGTGGCGGGCAGCTAGCTGAGC-----CTGCGGGAGCAGATGGGGAG
TAGGGTGCAAGATGTGCGGCGCGTCTTCGGTCACCGGTGCGTGCCAACTTTGCGATAGTGTATGCATTGCACGACGACGG
CCCTGGTCGTCAACGGCCGGTGCCGTGCTTCCCCTTTCGCGCGTCTCGGTTCTCGGATGCGCGTTGCATTTTCTGTACTG
GGCAATGGT-----GACGGCCCCAAAG----CTAGGCGCGTTTCGTGTGATTCCCCCGGCGTGACGCCCGGTGTT-----
-----CCCTTGCCGTCGTAGGTTGGTTGGGCGATCTGCCTGCTGCGCACTACTCCAATATGCTCGTCGTTCCGGTAACTG
GCATGATGCAGGGGTAGAGTGATAGGAGCTGCTGTGTCCATTGGTCGGACAAGATGACCCAAGTGATTTATTTTTGAAAC
CGCCGCAAAAGATTTGATTCAGCTGTTAATTAAGCAGAAGAGGATTGTCCTCTTAATTAACACAAAGCATGGTGGACACC
ATCAC-AAACAGTTAAACGGTAT-ACACGAGATGTCCGAGAAAGAACAAAAAAACCGATAACGAGGATTTCGGTACAATG
AACATAGTTGTGACTCAGGAGGATACTGATGCATCCGAGGTTTTTTGCCGAGGTTTTATGAAGTATCACGAAGGAAAGGT
AACGTCTCATGATAACCAAAGGTTCACTCGAATATCATTCG---------------------------------------
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>SNPs
SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS-------------------------------------S-----------------S-S----------
----------------------------------S-----S-----------------------S--------S---S--
-S--S----S------S------S-------------S---------------SS-S-----SSSSS-SS---SS---SS
SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS---------------------------------------SSS---------------S-S------S----S--
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-----S----------------------SSS--------------------SSSS-------------------------
---------------------S-----S-----------S----------------------------------------
------------------------------------------------------S--SS---------------------
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---------S------------------------------------S-------------SSS-SSSSSSSSSSSSSSSS
SS--S-----------------------S---------------------------------------------------
----------------------S---------------------------------------------------------
------S----------------------------SSSSSS-SSSSSSSSSSSSSSSS----------------------
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------------------------------------S-------------S-----------------------------
---------------------------------------S--S-----------------------S-------------
-----------------S------------S---------------------------------S---------------
-----------------------------------------------------S-------S------------------
S----------------------------------------------S------------------------S-------
---------------------------------------------S----------------------------------
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-----------------------------------------------------S-------------S-S--S-S-----
------SSS--------------------------S--------------------------------------------
-----------------------------------------------------S--SSSSSSSSSSSSSSS---------
-----------------S--------SSS--------------------------SSSSS--------------------
---S---------------------------------------------------------S----S-------------
-------------------------------S------------------------------------------------
---------SSSSS------------------------------------------------------------------
--------------------------------------S-----------------------------------------
------S----------------------------------------------S--------------------------
------------------------S-----------SS-------------------------------S----------
-----S-----------------S----S--------------------------S---------S-----S--------
------S--------------S---S----S------------------------------------------------S
---------------------S-------S----S---------------S---S----S-------------S------
--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS
>forward_304
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--------------------------------------------GACGTGGTTAGGCTGGTTGT----------------
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>reverse_2068
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-------------------------------------------------------------------GCCGCGATACACG
AATCAAC-------------------------------------------------------------------------
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