>input_sequence_65042
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ATGGAGTTCATCGACGACGACTGGGACTCCCAGCCGCGCGCGCGCGTTGTCCACTCCCGCGCCGATGCCGCCGCCAATTT
CTCATCCCCCACTGCGAATCCCGCGTCCCGCTCTCTCCCCCACGTCGCCGCCTGCGCCGCTGCAGCCGTGCTCCTCCTCG
CCGCAGCCTACTCCCTCGACTCGGCGTACCAGGTCTTCGCCTCCATTCTCGTTTGGATCGCATCCTCGCTGCTCCTCGCC
CCCTTCGCGCCATCCTCCGCCACTGGTGGCGACATCTCCGTCGGCCGCGGCAGCCTCCTCCCCGACCAGGAACCGTCCCA
GGAGCCCACCCCGGATCCCATCGCCCCCTCCCGCCGGGGTCGCCGCCAGAACGCCGCCCCGCCGCCCCCAAAGTCGTCAG
ATCCGGTCGCTCCTCCCGTCCAGCCGCCTCCACTGCGGCAGGAGGCGATGGGTGCGGGGACCGCTGTTCTGGACGGCGGG
GAGAGGGAGGAGGAGGTTGGCGAGTGGACCGACCAAGAAATGGAGCTTCTCCGGCGGCAGATGCTGAAGCACCCGGCAGG
AGAGCCCCAGCGCTGGGAGAAGATCGCTGCAGTGTTCGGCGGCCGCCGCACGCCGGAGAGCGTCATCCGCGCAGCAAAGT
CGGGCGGCGCCACGGCGGCTGGTGGCTCGTTCGAGCAGTTCCTGCGCAAGCGAAAGCCGCTGGACCCAAGGGCCGGGGCC
GCTGACGCAGACACAGGTGGCAATGCTGGAGGAGGGGACGGTGGTTGGAGTGCTGGCGAGGACCGTTCTCTGCTGAACGC
GCTCAAGGAGTTCCCTAAGGACACGGCAATGAGGTGGGAGAAGGTGGCCGCAGCAGTGCCTGGGAAGACAAAGGCTGGGT
GCATGAAGAGGGTCACTGAGCTCAAGCGTGACTTTCGGAGCAGCAAGGAGCCATAG------------------------
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>chr7A_1_TraesCS7A01G299800
CATCGTTCTTCAACCCCGT----GCGAGCGCCGACGGGTAGAAAAAAGCTACAACCGGCCTGAGAAAAAGCTTCAACCAA
CATGAGAAAAAGCTTTAATTGGG-TGTGAGCGGCGGCACTGAGTGATGCGGCCGGAGGCACGGTGGCGCGGCGACGGGCG
TGATACGACGGCGGCGGC-TAGGTGCTGCAACGACAGAGACGTCAGGCG-TTT------------------TGCTACGAG
TGGAGGCGACATCCTGCAGAAACCGGCGAGGCCAAGGGCGTGATGTCGACCACCAACGACGAGGGCGGCGTCCCGTGGAA
TCGACAGGAGTCAGCCGACGGTGACGAGGGCAGTGGCTGGCGGCGATCTGGACGGCCGACGAGCAGGCTGACGTATTGGG
GATCACGGGACTGCTCCGGATGCACATGCGTCATGTTTCTT---TTACTAGTGAAGCAGTTTA-GGGGAAGAAGGAATCC
TGCGGCTGATATAGACCGTATCGTACGTGCGCTGTTTGACCGACCAAACACCGGCGCAGAGTAGCCCCCTTTCATATTCC
CGTGGTAACGCATGGGCATTCAACTAGTGAGTCTGGTGTAGATACTCTAAGGCCTCCTTTGGTTTGTAGGAATGTCATAG
GATTTCTACATGATATGATTTGTATAGAAAAATTTCCTTTGAGCCCCTTTGGTTGGTAGGAATGGATAGGAATCAATTCT
TCACATTTTAGAGGAAAAAAAACATTAGCTACTCAATGAAAAAATTTCTATCCTATGCATCAAATGACATCTCTTTCTCT
ATAGAAATTGAGATGCATGTCATCTCACTTCCTATGATTTTTCTATTCCTACAACATTTTTATTCTATGAACCAAAGGAG
GCCTAAGTTTCCTTTGGATTGCAGCAAATCCCGTGAACCGAG-----------TGAGGAAATTGAGGGTTCAGTTGTACA
TGCTCTGAAACTGCTACTCCGAATCTCGCATCTTCGCTCCGCCTCGCCTTCGGCGGGCCTCGACCTCGCCGCCGCCGGCT
ATGGAGTTCATCGACGACGACTGGGACTCCCAGCCGCGCGCGCGCGTTGTCCACTCCCGCGCCGATGCCGCCGCCAATTT
CTCATCCCCCACTGCGAATCCCGCGTCCCGCTCTCTCCCCCACGTCGCCGCCTGCGCCGCTGCAGCCGTGCTCCTCCTCG
CCGCAGCCTACTCCCTCGACTCGGCGTACCAGGTCTTCGCCTCCATTCTCGTTTGGATCGCATCCTCGCTGCTCCTCGCC
CCCTTCGCGCCATCCTCCGCCACTGGTGGCGACATCTCCGTCGGCCGCGGCAGCCTCCTCCCCGACCAGGAACCGTCCCA
GGAGCCCACCCCGGATCCCATCGCCCCCTCCCGCCGGGGTCGCCGCCAGAACGCCGCCCCGCCGCCCCCAAAGTCGTCAG
ATCCGGTCGCTCCTCCCGTCCAGCCGCCTCCACTGCGGCAGGAGGCGATGGGTGCGGGGACCGCTGTTCTGGACGGCGGG
GAGAGGGAGGAGGAGGTTGGCGAGTGGACCGACCAAGAAATGGAGCTTCTCCGGCGGCAGATGCTGAAGCACCCGGCAGG
AGAGCCCCAGCGCTGGGAGAAGATCGCTGCAGTGTTCGGCGGCCGCCGCACGCCGGAGAGCGTCATCCGCGCAGCAAAGT
CGGGCGGCGCCACGGCGGCTGGTGGCTCGTTCGAGCAGTTCCTGCGCAAGCGAAAGCCGCTGGACCCAAGGGCCGGGGCC
GCTGACGCAGACACAGGTGGCAATGCTGGAGGAGGGGACGGTGGTTGGAGTGCTGGCGAGGACCGTTCTCTGCTGAACGC
GCTCAAGGAGTTCCCTAAGGACACGGCAATGAGGTGGGAGAAGGTGGCCGCAGCAGTGCCTGGGAAGACAAAGGCTGGGT
GCATGAAGAGGGTCACTGAGCTCAAGCGTGACTTTCGGAGCAGCAAGGAGCCATAGGAGGCAGCGCCATAGCTTGAACGT
TGTCTTCCTTGCCTGGTAAAGTCTCTGCTTGTCATTTTAACGGCAGTGATAGTATTATATGCTGGCTATCTTTATATGTT
GCTACTTGACAATAGATTTATGTTTTGTTGTTGTTTTGAGCTAATCATCTTGAAATCAATGTTACATTTTGGTGAAGCTA
AACGGCATCTTTTTATCATTCAGAAGTTGGAAACATGGAAACTATAATGTGTTGGCTGTCAAATCTTCATTTCATTTTTG
AAATGTTGGCATCATGCAAATTTGAGTGAAGCCTAGATGTTGCCCAAGAATGCAATGATATTGGTGTGATTTTCTGAGAA
CTGATTATAGTTATCAAT-ATTTACTGAAGTGTTCTACATGTCTTGTATTCGTGTGCTAGATGAAACTAGACACCTCATG
ATACACTTCCAATTTGGTTTATGTCGCCTTCGTCATAAAGATGACATGTTACTTGTCTCTACAAGGACCATAAGAAAAAA
CGATTATGTGACAATTACCACAAACACCCCATTCCTGATCACTATAAAATTCTTCCTCATTTTGATTTTTGGAACTTCAG
TGTTGTGCAAAGGAGCGAGAAGCCTAGATTTTCCCTAACTAAACAATGGGATAATATTGGTTTAATTCTAGAGTTGATCC
TAGCGATGACGTGACACTCGTCTTTGCTAGTAGTGCTGTTAAGCATATCACTTGTCTCACTAGATGACGTGACAGTCATC
TTTAATATAATTGCAGTGTTTGATGTTATAACTACAGAACAAATGCATTTTCTTCTTCTTTGCCCTGGATTTACCAGGAT
TATGCTCGAGGAGGAAATGCCATAAGAGATAGCCT----GTTAAATTAGCTGATTTCTGGTGCCAATATGGCAGTTGGCC
GAAATACCTCATAATTTATGTGCTGACAAAATAGATGATGTATGTTTCCCTTTTCTTAACCCGTCTTCTGAACACATATA
TCAGACTTGTCCATATCTTAC
>chr6B_3
TCGTTCT-TTCAACCCCGTGCGAG---GCATCGACGGATAGAAAAAAGCTACAACCGGCATGAGAAAAAGCTTCAACCAA
CATGAGAAAAAGCTTCAACTTGG-TGCGAGCGGCGACACTGAGTGATGTGGCCGGAGGCATGGTAGTGTGGCGACGGGCG
TGATACGACGGCGGTGGC-TAGGTGCTGCAACGACAGAGACGTCGAGCG-TTTGCTACGATGGAGTCGTTTTGCTACGAG
TGGAGGCGACATCCTGTTGAAACCGGCGAGGACGGGGATGCGATGGCGACCACCAGCGACGAGGGCGGCCTCATGTGGAA
CCGACAGAAGTCAGCCGACGGTGACAAGGGCAGCGGCTGGCGGCGACATGGACGGCCGGCGAGCTCGCTGACGTATTGGA
GATCACGGGACTGCATCGGATGCACAGGCATCATGTTT-TT---TTACTAGCGAAGCAGTTTGTGGGGAAGAAGGAATCC
TGCGGCTGTTATAGACCGTATCGTATGTGCGCTGTTTGACCGGCCGAA--------------------------------
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>chr1B_3
TCGTTCA-TTCAACCCCATGCAAGCGAGCGTCGATGGGTGGAAAAAAGCTTCAACTGCCATGAGAAAAAGCTTCAACCAA
CACGAGAAAAAGCTTCAACTGGGATGCGAGCGGCGGCAATGAGTGTTGTGGCCGGAGGCACGGTGGTGCGGTGACGGGCG
TGATACGATGGCGGCAACTTAGGTGCTGCAACGACAGATACGTCGGACGTTTTGCTACAACGACGTCGTTTTGCTATGAG
TGGAGGCGAGATCCTGCTGGAACCGGCGGGGACAGGGATGCGATGGCGACCACCAGCGACGAGAGCGGCGTCCTATGGAA
CCAATGGGAGTCAGCCGACGGTGACGAGGGCGGCGGCCAACGGCGACGTGGACGGCCGGCGAGTTGGCTGACGTATTGGG
GATCACGGGACTGCTCGTGATGAACAGGCGCCATGATT-TTTTCTTAGTAGCGAAGTAGTT----GGGGAAGAGGAATTG
TGCGGTTGTTATAGATCGAATCATACGTGCGCGGTTAGACCGGCCGAAA-------------------------------
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>chr4B_9
--------TTCAACCCCGTGCGAG---GCGTCGATGGGTAGAAAAAAGCTACAACCGACATGAGAAAAAGCTTCAACCAA
CATGAGAAAAAGCTTCAACTTGG-TGCGAGCGGCGACACTGAGTGATGTGGCTGGAGGCATGGTGGTGCGGCGACGGGCG
TGATACGACGGCGGTGGC-TAGGTGCTGCAATGACAGAGACGTCGAGCG-TTTGCTACGATGGCGTCGTTTTGCTACGAG
TGGAGGCGACATCCTGTTGAAACCGGCGAGGACGGGGATGCGATGGCGACCACCAGCGACGAGGGCGGCGTCATGTGGAA
CCGACAGAAGTCAGCCGACGGTGACGAGGGCAGCGGCTGGCGGCGACATGGACGGCCAGCGAGCTCGCTGACGTATTGGA
GATCACGGGACTGCATCGGATGCACAGGCATCATGTTC-TTTTTTTACTAGCGAAGCAGTTTGCAGGGAAGAAGGAATCC
TGCGGCTGTTATAGACCGTATCGTACGTGCGCTGTTTGACCGGCCAAA--------------------------------
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>chr7B_856
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----AAGTTTCCTTTGAATTGCAGCAAATCCCGTGAACCGAGCGAGGCCCTGGTGAGGAAATTGGGGGTTC--------A
TGCTCTGAAACTGCTACTCCGAATCTCGCATCTTCGCTCCGCCTCGCCTTCGGCGGGCCTCGACCTCGCCGCCGCCGGCT
ATGGAGTTCATCGACGACGAGTGGGACTCCCAGCCGCGCGCGCGCGTCGTCCACTCCCGCGCCGATGCCGCCGCCAATTC
CTCATCCCCCACTGCGAATCCCGCGTCCCGCTCTCTCCCCCACGTCGTCGCCTGCGCCGCTGCAGCCGTGCTCCTCCTCG
CCGCAGCCTACTCCCTCGACTCGGCCTACCAGGTCTTCGCCTCCATTCTCGTTTGGATCGCATCCTCGCTGCTCCTCGCC
CCCTTCGCGCCATCCTCCGCCACCGGCGGCGACATCTCCGTCGGCCGCGGCAGCTTCCTCCCTGACCAGGAACCGTCCCA
GGAGCCCACCCCGGACCCCATCGCCCCCTCCCGCCGGGGTCGCCGCCAGAACGCCGCCCCGCCGCCCCCAAAGTCGTCAG
ATCCGGTCGCTCCTCCCGTCCAGCCGCCTCCACGGCGGCAGGAGGCGATGGGTGGGGGGACCGCTGTTCTGGACGGCGTG
GAGAGGGAGGAGGAGGTTGGCGAGTGGACCGACCAAGAAATGGAGCTTCTCCGGCGGCAGATGCTGAAGCACCCGGCAGG
AGAGCCCCAGCGCTGGGAGAAGATCGCCGCAGTGTTCGGCGGCCGCCGCACGCCGGAGAGCGTCATCCGCGCAGCAAAGT
CAGGCGGCGCCGTGGCGGCTGGTGGCTCGTTCGAGCAGTTCCTGCGCAAGCGAAAGCCGCTGGACCCAAGGGCCGGGGCC
GCTGACGCTGATACAGGTGGCAATGCTGGAGGAGGGGACGGTGGTTGGAGTGCTGGTGAGGACCGTTCTCTGCTGAACGC
GCTCAAGGAGTTCCCTAAGGACACGGCAATGAGGTGGGAGAAGGTGGCCGCAGCAGTGCCTGGGAAGACAAAGTCCGGGT
GCATGAAGAGGGTCACCGAGCTCAAGCGTGACTTTCGGAGCAGCAAGGAGCCATAGGAGGCAGCGCCATAGCTTGAACGT
TGTCTTCCTTGCCTGGTACAGTCTCTGCTTGTCATTTTGACGGCAGTAATAGTATTATATGCTGGCTATCTTTATATATT
GCTACTTGACAATAGATTTATGTTTTGTTGTTGTTTTGAGCTAATCATCTTGAAATCAATGTTACACTTTGGTGAAGCTA
AACGGCATCTTTTTATCATTCAGAAGTTGGAAACATGAAAATTATAATGTGTTGGCTGTCAAATCTTCATTTCATTTTTG
AAATGGTGGCATCATGCAAATTTGAGTGAAGCCTAGATGTTCCCCAAGAATGCAA------------------------A
CTGATGATAGTTATCAATTATTTACTAAAGTGTTGTACATGTCTTGTATTCGTGTGCTAGATGAAACTAGACACCTCATG
ATACGCTTCCAATTTGGTTTATGTTGCCTGCTTCATAAAGATGACATGTTACTTGTCTTTGAAAGGACCATAAGAAAAA-
CGATTATGTGACAGTTACCACAAACACCCCATTCCTGATCACTATAAAATTCTTCCTCATTTTGATTTTTGGAACTTCAG
TGTTATGCAAAGGAGCGAGAAGCCTAGATTTTCCCCAACTAAACAATAGGATAATATTGGTTTAATTCTAGAGTTGATCC
TAGCGATGATGCGACACTCGTTTTTGCTAGTAGTGCTGTTAAACATATCACTTGTCTCACTAGATGACGCGACAGTTGTC
TTTAATATAATTGCAGTGTTTGATGTTATAACTACAGAATAAATGCATTTTCTTCTTCATTGCCCCGGATTTACCAGGAT
TATGCTCGAGGAAGAAATGCCCTAAGAGATAGCCTATCTGTTAAATTAGCTGATTTCTGGTGCCAATATAGCAGTTGGCC
AAAATACCTCATAATTTATGTGCCGACAAAATAGATGATGTGTGTTTCCTTTTTCTTAACCCGTCTTCTCAACACATGTA
TGAGACTTGTCCATATCTTAC
>chr7D_895
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------------------------------------------------------GAGGAAATCGGGGGTTCTGTTGTAGA
TGTTCTGAAACTGCTACTCCGAATCTCGCATCGTCGCTCCGCCTCGCCTTCGGCGGGCCTCGACCTCGCCGCCGCCGGCT
ATGGAGTTCATCGACGACGACTGGGACTCCCAGCCGCGCGCGCGCGTCGTCCACTCCCGCGCCGATGCCGCCGCCAATTC
CTCATCCCCCACTGCGAATCCCGCGTCCCGCTCTCTCCCCCACGTCGCCGCCTGCGCCGCTGCAGCCGTGCTCCTCCTCG
CCGCAGCCTACTCCCTCGACTCGGCCTACCAGGTCTTCGCCTCCATTCTCGTTTGGATCGCATCCTCGCTGCTCCTCGCC
CCCTTCGCGCCATCCTCCGCCACCGGCGGCGACATCTCCGTCGGCCGCGGCAGCCTCCTCCCCGACCAGGAACCGTCCCA
GGAGCCCACCCCGGACCCCATCGCCCCCTCCCGCCGGGGTCGCCGCCAGAACGCCGCCCCGCCGCCCCCAAAGTCGTCAG
ATCCGGTCGCTCCTCCCGTCCAGCCGCCTCCACGGCGGCAGGAGGCGATGGGTGCGGGGACCGCTGTTCTGGACGGCGTG
GAGAGGG---AGGAGGTTGGCGAGTGGACCGACCAAGAAATGGAGCTTCTCCGGCGGCAGATGCTGAAGCACCCGGCAGG
AGAGCCCCAACGCTGGGAGAAGATCGCCACAGTGTTCGGCGGCCGCCGCACGCCGGAGAGCGTCATCCGCGCAGCAAAGT
CAGGCGGCGCCGCGGCGGCTGGTGGCTCGTTTGAGCAGTTCCTGCGCAAGCGAAAGCCGCTGGACCCAAGGGCCGGGGCC
GCTGACGCTGACACAGGTGGCAATGCTGGAGGAGGGGACGGTGGTTGGAGTGCTGGCGAGGACCGTTCTCTGCTGAACGC
GCTCAAGGAGTTCCCTAAGGACACGGCAATGAGGTGGGAGAAGGTGGCCGCAGCAGTGCCTGGGAAGACAAAGGCCGGGT
GCATGAAGAGGGTCACCGAACTCAAGCGTGACTTTCGGAGCAGCAAGGAGCCATAGGAGGCAGCGCCATAGCTTGAACGT
TGTCTTCCTTGCCTGGTACAGTCTCTGCTTGTCATTTTAACGGCAGTAATAGTATTATATGCTGGCTATCTTTATATGTT
GCTACTTGACAATAGATTTATGTTTTGTTGTTGTTTTGAGCTAATCATCTTGAAATCAATGTTACACTTTGGTGAAGTTA
AACGGCATCTTTTTATCATTCAGAAGTTGGAAACATGAAAACTATAATGTGTTGGCTGTCAATTGTTCATTTCATTTTTG
AAATGTTGGCATCATGCAAATTTGAGTGAAGCCTAGATGTTCCCCAAGAATGCAA------------------------A
CTGACTATAGTTATCAATTATTTACTAAAGTGTTGTACATGTCTTGTATTCGTGTGCTAGATGAAACTAGACACCTCATG
ATACGCTTCCAATTTGGTTTATGTTGCCTGCCTCATAAAGATGACATGTTACTTGTCTTTACAAGGACCATAAGAAAAAA
CGATTATGTGACAATTACCACAAACACTCCATTCCTGATCACTATAAAATCCTTCCTCATTTTGATTTTTGGAACTTCAG
TGTTGTGCAAAGGAGCGAGAAGCCTAGATTTTCCCCAACTAAACAATAGGATAATATTGGTTTAATTCTAGAGTTGATCC
TAGCGATGACGCGACACTCGTCTTTGCTAGTAGTGCTGTTAAGCATATCACTTGTCTCACTAGATGACGCGACAGTTGTC
TTTAATATAATTGCAGTGTTTGATGTTATAACTACAGAACAAATGCATTTTCTTCTTCTTTGCTCCGGAGTTACCAGGAT
TATGCTCGAGGAAGAAATGCCCTAAGAGATAGCCTATCTGTTAAATTAGCTGATTTCTGGTGCCAATATGGCAGTTGGCC
AAAATACCTCATAATTTATGTGCCGACAAAATAGATGATGTGTGTTTCCTTTTTCTTAACCCGTCTTCTCAACACATGTA
TGAGACTTGTCCATATCTTAC
>SNPs
SSSSSS-S----------------------S----------------------------S--------------------
---------------S--S-------S---------------------S-----------------S-------------
--------------------------------------------S-----------------------------------
-----------------S-------------S--S--SS-S----S---------S-----------------S------
S--------------------------------S------------SS----------S-----S---------------
--------------------------S-----------S------------S----------S-----------------
--------S---------------------------------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS------------S-----------------------------------------------S------S------S-
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-----------------------------------------------S-------------------------------S
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-------------------------S------------------------------------------------------
-----------------------S--S-----------------------------------------------------
---------------S----------------------------------------------------------------
---------------------------------S--------------------------------------------S-
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---------------------------S----------------------------------------------------
-S---------S--------------------------------------------------------------------
--------S-----------------------------------------------------------------------
---------------------------------------------------------------------------S----
----------------S---------------------------------------------------------------
------------------S----------------------------S--------------------------------
------------------------------------------------------------------S-------------
-------------------------------------S------------------------------------------
-----------------------------------------S-------------SSSSSSSSSSSSSSSSSSSSSSSS-
--------------------------S-------S---------------------------------------------
----S-------------------S----S-S--------------------------S---------------------
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-----------------------------------S-----------S--------------------------------
-----------S---------------------------------------------------------S------SS--
-----------------------------------------------------------------S--------------
------------S--------S----------------------------------------------------------
S----------------------S-----------------S-------S-------------------S-------S--
-S-------------------
>forward_697
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-------------------------------------TTTGAGCCCCTTTGGTTGGT-----------------------
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>reverse_1769
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--------AGACACAGGTGGCAATGCTG----------------------------------------------------
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>forward_702
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------------------------------------------GCCCCTTTGGTTGGTAGGAA------------------
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>reverse_1916
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---------------------------------------------------------------------------TGGGT
GCATGAAGAGGGTCA-----------------------------------------------------------------
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>forward_703
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------------------------------------------GCCCCTTTGGTTGGTAGGAAT-----------------
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>reverse_1937
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----------------TGAGCTCAAGCGTGACTTTC--------------------------------------------
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>forward_897
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---------------------------------------------------------------------------AGGAG
GCCTAAGTTTCCTTTGG---------------------------------------------------------------
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>reverse_2147
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------------------------------------------------------------------TTTTGGTGAAGCTA
AACGGCA-------------------------------------------------------------------------
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