>input_sequence_65001
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---------------ATGGCAGCCGAGTCCTCTGTTCCACAAACTTCCTCTGAATCGGCTGCTCACAAGATGGGCTTCTT
CAGAGTCTCTGATCTTCTTGTCAAACTGAGCACCAAATGTTTGATTGAGTTGGATGCCGTCCGCAGCCCAACGTCTCCCT
TAGACCTGAAATTGTTCACAGGCCTTGCTACCAAATCACCCAGATCGTCTTTCCTTGATGCCGGCGCAGCCAGCCAGAAC
CAAAAGATCTTGCTCGGGGACAGGGTTGGCCTTGGACTGGTGGATTCTCTCAGTCATGAAAACAACCCCACACCCTTGGG
CAGCAGGAAGGTTCTC---GGATCTGAGATGAGGATTACTGACAACTTAACTCTCAAGAACAGCTCCACTGCTCCTAATC
AAGCTGGACTGCTTGAACAGAAAGATGAGAATATGAGTGATGGACTCAACGGTAGTATCATGTCCCTGGATGACATTGTC
AATTCAGAGGATTACACCTGTGTTGTTACCCGTGGTCCGAACCCTAGAACTACCCACATTTTTGGAGACCGTGTTTTTGA
GTTTCAAGCTGAGCAACTGATGCCTGATGAGGGTGGGTGTGAGGAGAGTTTGGCCCCTCATCTGAATGGGGATACCATGA
GCTTCTGTTGTTTTTGCGGTGACAAGCTCAAAGAAGGGAAAGACATCTATATCTACCAGTAAGTGTTCTAGTAAACTAGA
TGCAACCATCGTTATGTTCTCTTTTTTGCTGGTTTAATAGATCTACTGCTGTTCTGATTGTTCGTTAATTATTTGTATCA
TGTCTTTCAATCGTAGGGGTGACAAAGCCTTCTGCAGCATGGAGTGCAGGGAGAACTTCATGGAAGATGAGATGGAAGGT
GAACCTTCGATAGGTCACTCTGATCCCAGCTGCCCATCCTTTGACAATCGTCGCATTTTCCAACTGATCCAGTGA-----
--------------------------------------------------------------------------------
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---------------------------------------------------------------------
>chr3A_1_TraesCS3A01G212800
GAGTACAGAGGAGAGAGCCCTAGAAAGAGAAAGTAGAGAGAGAGAGAGAAAGGGGGTTGGGGTAGGGTAGGGTCCAACAA
C----TACTGGAGCCAAAAGTTCTCACATAAACCTTTCCTTCCTT--CTCTCCCCTCTCCGCCCTATTTCTTCTTATCTT
TCTGTCACACTGCCGCCT-CCCTCGACTCGACTCCGCTCTTCCTC-----CGCCCCGCCCCGCCCTGCCGTCCGAGGAGA
GGAGAGGAGAGGAGACCAAGGTAGGGTAGGCCGTTCCTCCTTCCTTGATCCTCGCCGATTTTACCTTCCGGCGTTGGGGA
TTTACCGGGCCTGCATTTCCGCCCGGGCGGAACAGATTAGAACGCGTTCACGAGGGGCTTCTAATCTGCCTAGGTCCTCG
GATGCCCTCAACGGCCTCTCCGATCCTTCGTGCTTCCGCGTTTCTTTTTCCCCCACTTGTT-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------TTTTAATTTTTG
AAGATTTTGGGGGGTTTAATCTCCGCTCCTTTTTCGAGGATAAATCAATCAATCTCTTCTCGTGGTTTTCAACGACTACT
CGTCATGGCCTTTCATCTTGGTTTTGGCTGAATTTTTCAGGAGATTTGCCG---TTTTTTCTCTTCACGACGCAGCCGCT
GCCGCTGCGA------GGAAACAAAACAATCCCGTGAGGCAAGGACGGTTGTGAAGCAAAGGTGAGAATCAGATGATGAT
TGGTCAATCACACATGCCTTTATCTTTTTGTTTTCTTCGCCTTCTCCGTATGCCCATGCTTTCCTGATGCTTTAATC---
-----------------------CAAGCCAAGGAACTACAATATGGAACCCTTTTAGTTTGGCTCTTGATTGGTTGTACA
GTAGGAGTATTATACTAGCTGCAGCTCCTCGTGGAGTGATTCTTCTGTTTGCTC---------TTTTTTTCCC--CAACC
GAATCAGTAGATAGATTCTTCTAAATAAATTCTT----------------------------------------------
--------------------------------------------------------------------------------
------------------------CTATTAGATTAGAAAAGGCCGAACTTGTAAAATCAAGATATTGACACCCAAAAGGA
AATTGCAGTGATCAAATGGCAGCCGAGTCCTCTGTTCCACAAACTTCCTCTGAATCGGCTGCTCACAAGATGGGCTTCTT
CAGAGTCTCTGATCTTCTTGTCAAACTGAGCACCAAATGTTTGATTGAGTTGGATGCCGTCCGCAGCCCAACGTCTCCCT
TAGACCTGAAATTGTTCACAGGCCTTGCTACCAAATCACCCAGATCGTCTTTCCTTGATGCCGGCGCAGCCAGCCAGAAC
CAAAAGATCTTGCTCGGGGACAGGGTTGGCCTTGGACTGGTGGATTCTCTCAGTCATGAAAACAACCCCACACCCTTGGG
CAGCAGGAAGGTTCTC---GGATCTGAGATGAGGATTACTGACAACTTAACTCTCAAGAACAGCTCCACTGCTCCTAATC
AAGCTGGACTGCTTGAACAGAAAGATGAGAATATGAGTGATGGACTCAACGGTAGTATCATGTCCCTGGATGACATTGTC
AATTCAGAGGATTACACCTGTGTTGTTACCCGTGGTCCGAACCCTAGAACTACCCACATTTTTGGAGACCGTGTTTTTGA
GTTTCAAGCTGAGCAACTGATGCCTGATGAGGGTGGGTGTGAGGAGAGTTTGGCCCCTCATCTGAATGGGGATACCATGA
GCTTCTGTTGTTTTTGCGGTGACAAGCTCAAAGAAGGGAAAGACATCTATATCTACCAGTAAGTGTTCTAGTAAACTAGA
TGCAACCATCGTTATGTTCTCTTTTTTGCTGGTTTAATAGATCTACTGCTGTTCTGATTGTTCGTTAATTATTTGTATCA
TGTCTTTCAATCGTAGGGGTGACAAAGCCTTCTGCAGCATGGAGTGCAGGGAGAACTTCATGGAAGATGAGATGGAAGGT
GAACCTTCGATAGGTCACTCTGATCCCAGCTGCCCATCCTTTGACAATCGTCGCATTTTCCAACTGATCCAGTGACC-AG
CGAGCATCAGTAAACACTTGATGTGGTCGTATCTGAAGCGCTGTCTGAGGTTAATAAGCTGCAGCCATGGATGTGATCAT
GCTGATCAAGTTTTTGCCTGAAGATTTTGTCTGCTGCGGC-ACTGATGAATTTACCCCCCTTAATGATTTCTTTATTTTC
GTTACCTGGATCCTCAAATTTTTGGAGGAGCCTGAACGATGACTGTGCTTCTGGTCATATTATTATTTTGATCGGAAAAG
GGTGTGTGCGTGTGTTTGCCTGAGCCCCAATTTCAATTGGACGTCATTTTGTCGACGCCTATTGAGTATTGTGTCATGTA
TCTGAACCTAAGCTTCTACATGTATTTGCATGTGGTACACAATAATATTTGAGTATACTATCTTGTTCACCTTTCTTTCT
GTGTTGGGTCTTCATTTGATGATTAGAGTTCTTATATGGCAAGAACTATCTGATTCTTGGCAGGAGTAGTGTCTGTTTGT
GGCTGTGCAAATCATAACCCCCATGACTGGTACATTGAGATGCTGCCATCAGTTTCG-GGCGACTGCATTTGTTTGAGTG
AACTTGCCGAAACTTGGTTGTGATCAGTACTTGATCATTGAATTAGCCGACAAGTT------------------------
--------------------------------------------------------------------------------
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-------GCTACTACTGTTAAGTGTCTAATACTGCGAATGGGGTCACTGTCTTCGGATTGGCTCCCTGTGTTCGTTAGCT
CAGGAGTACCTGTCATTGCAGGTGCGAGAGCTAAGGTTGCCTTCAGATTTTTATGAAGGTAGTTCCGCGTGTTTGAGAGT
TCATTTTTTTTATAATAACAGTACTTCATCGATTGATGAACATCATGACAAAGCTCGTCCCTGATACAGTCCGGAACCAC
ACCATGATAAATACGATTTACATCCTGCTCATAACTCCGAGCTAATTTGTGTGCCGCTACATTCAAATCACGCCTGACAT
GTAAAAAAGAACATCAAGTAAACCCGGACGTGAGAGACTCGATGCCAGCGACAACAGCCCCCACTCTTT
>chr3D_1
GAGTACAGAGAAGAGA-CCCTAGAAAAAGAAAGTAGAGAGAGAGAGAGAGAGAAAG--GGGTTGGGGTAGGGTCCAACAA
CTACTTACTGGAGCCAAAAGTTCTCACATAAACCTTTCCTCCCTTCTCTCTCCCCTCTCCGCCCTATTTCTTCTTATCTT
TCTGTCACACTGCCGCCT-CCCTCGAGTCGAGTCCGCTCTTCCT--------CCCCGCCCCGCCCTGCCGTCCGAGGAGA
GGAGAGGAGAGGAGACCAAGGTAGGGCAGGCCGTTCCTCCTTCCTTGACCCTCGCCGATTTTACCTTCCGGCGTTGGGGA
TTTACGGGACCTGCATTTCCGCCCAGGGGGAACAGATTAAAACGCGTTCGCGAGGGGCTCCTAATCTGCCTAGGTCCTCG
GATGCCCTCAACGGCCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTT-------G
AAGATTTTT-GGGGTTTAATCTCCGCTCCTTTT-CGAGGATA----AATCAATCTCTTCTCGTGGTTTTCCACGACTACT
CGTCATAGCCTTTCATCTTGGTTTTGGCTGAATTTTTCAGGAGATTTGCCG---TTTTTTTTCTTCACGAGGGAGCCGCT
GCCGCTGCGACTGCGAGGAAACAGAACAATCC-GTGAGGCAAGGACGGTTGTGAAGCAAAGGTGAGAATCAGATGATGAT
TGGTCAATCACACATGCCTTTATCTTTTTGTTTTCTTCGCCTTCTCCGTATGCCCATGCTTTCCTGATGCTTTAATCCAT
GTATTTATGTATGTGTATGCTTACAAGCCAAGGAACTCCAATATGAAACCCTTTTAGTTTGGCTCTTGGTTGGTTGTACA
GTAGGAGTATTATACTAGCTGCAGCTCCTCGTGGAGTGATTCTTCTGTTTTGGCTCCATGTAGGGTTTTTTTTTTCAACC
GAATCAGTAGATAGATTCTTCTAAATAAATTCTACTCCC------------AGATTTCATATGGACTATATATGGAGGAG
CAAAATGAGTGAATCTACACTCTAAAATGCATCTATATACATCCATATGTGGTCCATAGTGAAATCTTTATAAAGACTTA
TATTTAGAAACGGAGGGAATAGTACTATTAGATTATAAACCTGAACTTAT---AAATCAAGTTATTGACACCCAAAAGGA
AATTGCAGTGATCAAATGGCAGCCGAGTCCTCTGTTCCACAAACTTCCTCTGAATCGGCTGCTCACAAGATGGGCTTCTT
CAGAGTCCCTGATCTTCTTGTCAAACTGAGCACCAAATGTTTGATTGAGTTGGATGCTGTCCGCAGCCCAACATCCCCCT
TAGACCTGAAATTGTTCACAGGCCTTGCTACCAAATCACCCAGATCGTCCTTCCTTGATGCCGGCGCAGCCAGCCAGAAC
CAAAAGATCTTGCTTGGGGACAGGGTTGGCCTTGGACTGGTGGATTCTCTCAGTGATGAAAACAACCCCACACCCTTGGG
CAGCAGGAAGGTTCTCCTTGGATCTGAGATGAGGATTACTGACAACTTAACTCGAAAGAACAGCTCCACTGCTCCTAATC
AAGCTGGACTGCTTGAACAGAAAGATGAGAATATGAGTGATGGACTCAACGGTAGTATCATGTCCCTGGATGACATTGTC
AATTCAGAGGATTACACCTGTGTTGTTACCCGTGGTCCGAACCCTAGAACTACCCACATTTTTGGAGACCGTGTTTTTGA
GTTTCAAGCCGAGCAACTGATCCCTGATGAGGGTGGGTGTGAGGAGAGTTTGGCCCCTCATCTGAATGGGGATACCATGA
GCTTCTGTTGTTTTTGCGGTGACAAGCTCAAAGAAGGGAAAGACATCTATATCTACCAGTAAGTGTTCCAGTAAACTAGA
TGC-ACCATCCTTATGTTCTCTTTTTTGCTGGTTTAATAGATCTGCGGCTGTTCTGATTGTTGTTTAATGTTTTGTATCA
TGTCTTTCAATCGTAGGGGTGACAAAGCCTTCTGCAGCATGGAGTGCAGGGAGAACTTCATGGAAGATGAGATGGAAGGT
GAACCTTCGATAGGTCACTCTGATCCCAGCGGCCCATCCTTTGACAATCGTCGCATTTTCCACCTGATCCAGTGAGCGAG
CGAGCATCAGTAAACACTTGATGTGGTCGTATCTGAAGTGCTGTCTGAGGTTAATAAGCTGCAGCCATGGATGTGATCAT
GCTGATCAAGTTTTTGCGTGAAGATTTTGTCTGCTGCGGCAACTGATGAATTTACCCCGCTTAATGATTTCTTTATTTTC
GTTACCTGGATCCTCAAATTTTTGGAGGAGCCTGAACGATGACTGTGCTTCCGGTCATATTATTATTTTGATCGGAAAAG
GGTGTGTGCGTGTGTTTGCCTGAACCTCAATTTCAATTGGACGTCATTTTGTCGACTCCTATTGAGTATTGTGTCATGTA
TCTGAACCTAAGCTTCTACATGTATTTGCATGTGGTACACAATAATATTTGAGTATACTATCTTGTTCACCTTTCTTTCT
GTGTTGGGTCTTCATTTGATGATTAGAGTTCTTATATGGCAAGAACTATCTGATTCTTGGCAGGAGTAGTGTCTGTTTGT
GGCTGTGCAAATCATAACCCCCATGACTGGTACATTGAGATGCTGGCATCAGTTTTCAGGAGACTGCATTTGTTTGAGTG
AACTTGCCGAAACTTGGTTGTGATCAGTACTTGATCATTGAATTAGCTGACAAGTT------------------------
--------------------------------------------------------------------------------
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-------CCTACTACTG-TAAGTGTCTAATACTGCGAATGGG-TCACTGTCTTCGGATTGGCTCCCTGTGTTCGTTAGCT
CAGGAGTACCTGTCATTGCAGGTGCGAGAGCTAACGTTGCCTTCAGATTTTTATGAAGGTAGTTTTGCGTGTTTGAGAGT
TGA-TTTTTTTAGAATAACAGCACTTCATCGATTGATGAACATCATGACAAAGCTCGTCCCTGATACTATCCGGAACCAC
ACCACAATAAATACGATTTACATCCTGCTCACAACTCCGAGCTAATTTGTGTGCCGCTACATTCAAATCACGCCTGACAT
GTAAGAAAGAACATCGAGTAAACCCGGACGTGAGAGACTCGATGCCAGCGACAACAGACCCCACTCTT-
>chr3B_1
GAGTACAGAGAAGAGAGCCCTAGAAAAAGAAAGTATATATATAGAGAGAGAGAA-G--GGGTTGGGGTAGGGTCCAACAA
CTACTTACTGGAGCCAAAAGTTCTCACATAAACCTTTCCTCCCTTCTCTCTCCCCTCTCCGCCCTATTTCTTCTTATCTT
TCTGTCATACTGCAGCCTCCCCTCGAGTCGCCTCCGCTCTTCCTCCGCCCCGCCCCGCCCCGCCCTGCCGTCCGAGGAGA
GGAGAGGAGA-----CCAAGGTAGGGCAGGCCGTTCCTCCTTCCTTGATCCTCGCCGATTTTACCTTCTGGCGTCGGGGA
TTTACCGGACCTGCATTTCCGCCCAGGGGGAACAGATTAGAACGCGCTCGCGAGGGGCTCCTAATCTGCCTAGGTCCTCG
GATGCCCTCAACGGCCTCTCCGATCGTCCGTGGTTCCGCGTTTATTTTTCCCTCACTTTTT-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------TTTT-------G
GAGATTTTT-GGGGTTTAATCTCCGCTCCTTTTTCGAGGATA----AATCAACCTCTTCTCGTGGTTTTCAACGACTACT
CCTCATGGCCTTTCATCTTGGTTTTGGCTGAATTTTTCAGGAGATTTGCCGGTTTTTTTTTTCTTCACGAGGGAGCCGCT
GCCGCTGCGA------GGAAACAAAACAATCTCCTGAGGCAAGGACGGTTGTGAAGCAAAGGTGAGAATCAGATGATGAT
TGGTCAATCACACATGCCTTTATCTTTTTGTTTTCTTCGCCTTCTCCGTATGCCCATGCTTTCCTGATGCTTTAATCCAT
GTATATATGTATGTGTATGCTTACAAGCCAAGGAACTCCAATATGAAACCCTTTTAGTTTGGCTCTTGGTTGGTTGCAC-
-----AGTATTATACTAGCTGCAGCTCCTCGTGGAGTGATTCTTCTGTTTTGACTCCATCTAGTTTTTTTCCC--CAACC
GAATCAGTAGATAGATTCTTCTAAATAAATTCTACTCCCTCCGTTCCATAGAGATTTCATATGGACTACATACAGAGGAG
CAAAATGAGTGAATCTATACTCTAAAATGCATCTATATACATGCGTATGTGGTCCTTAGTAAAATCTCTACAAAGACTTA
TATTTAGAAACGGAGGGAGTAGTACTATTGGATTATAAACCTGAACTTAT---AAATCAAGTTATTGACACCCAAAAGGA
AATTGCAGTGATCAAATGGCAGCCGAGTCCTCTGTTCCACAAACTTCCTCTGAATCGGCTGCTCACAAGATGGGCTTCTT
CAGAGTCCCTGATCTTCTCGTCAAACTGAGCACCAAATGTTTGATTGAGTTGGATGCCGTCCGCAGCCCAACATCCCCCT
TAGACCTGAAATTGTTCACAGGCCTTGCTACCAGATCACCCAGATCGTCCTTCCTTGATGCCGGCGCAGCCAGCCAGAAC
CAAAAGATCTTGCTCGGGGACAGGGTTGGCCTGGGACTGGTGGATTCTCTCAGTGATGAAAACAACCCCACACCCTTGGG
CAGCAGGAAGGTTCTCCTTGGATCTGAGATGAGGATTACTGACAACTTAACTCTCAAGAACAGCTCCACTGCTCCTAATC
AAGCTGGCCTGCTTGAACAGAAAGATGAGAATATGAGTGATGGACTCAACGGTAGTATCATGTCCCTGGATGACATTGTC
AATTCAGAGGATTACACCTGCGTTGTTACCCGTGGTCCAAACCCTAGAACTACCCACATTTTTGGAGACCGTGTTTTTGA
GTTTCAAGCTGAGCAACTGATGCCTGATGAGGGTGGGTGTGAGGAGAGTTTGGCCCCTCATCTGAATGGGGATACCATGA
GCTTCTGTTGTTTTTGCGGTGACAAGCTCAAAGAAGGGAAAGACATCTATATCTACCAGTAAGTGTTCCAGTAAACTAGA
TGC-ACCATCGTTATGTTCTCCTTTTTGCTGGTTTAATAGATCTGCGGCTGTTCTGATTGTTGTTTAATGTTTTGTATCA
TGTCTTTCAATCGTAGGGGTGACAAAGCCTTCTGCAGCATGGAATGCCGGGAGAACTTCATGGAAGATGAGATGGAAGGT
GAACCTTCGATAGGTCACTCTGATCCCAGCGGCCCTTCCTTTGACAATCGTTGCATTTTCCAACTGATCCAGTGAGCGAG
CGAGCATCAGTAAACACTTGATGTGGTCGTATCTGAAGCGCTGTCTGAGGTTAATAAGCTGCAGCCATGGATGTGATCAT
GCTGATCAAGTTTTTGCGTGAAGATTTTGTCTGCTGCGGC-ACTGATGAAGTTACCCCCCTTAATGATTTCTTTATTTTC
GTTATCTGGATCCTCAAATTTTTGGAGGAGCCTGAACGATGACTGTGCTTCCGGTCATATTATTATTTTGATCGGAAAAG
GGTGTGTGCGTGTGTTTGCCTGAACCTCAATTTCAATTGGACGTCATTTTGTCAACGCCTATTGAGTGTTGTGTCATGTA
TCTGAACCTAAGCTTCTACATGTATTTGCATGTGGTACACAATAATATTTGAGTATACTATCTTGTTCACCTTTCATTCT
GTATTGGGTCTTCATTTGATGATTAGAGTTCTTATATGGCAAGAACTATTTGATTCTTGGCAGGAGTAGTGTCTGTTTGT
GGCTGTGCAAATCATAACCCCCATGACTGGTACATTGAGATGCTGCCATCAGTTTTCAGGAGACTGCATTTGTTTGAGTG
AACTTGTCGAAACTTGGTTGTGATCAGTACTTGATCATTGAATTAGCCGACAAGTAGCTACTACTGTCTTTTTTTTTCGA
GGGTACGCCAATGGCGTACCTTAGCTTTATAGAAGGAAGAAAAATATGTACAAGAGATTACACATCGCTAGTTAGGAGTC
ACAAACCGACCCTAACCAAGCCTCCACACCACTCCCTAGCTCTACTCGACTACTCTATGATCGGTTGTCCTCCGAAAGCT
CCTGCTTTGGCCCAAGTCCTCAACTCATCAAAGATAGAGTCTACAATATCCCACTCGTTCTTGATTATGCCCGTGTCGAA
GACCCTCGCATTCCTTTGCTTCCATATCGTCCAACAGATTAGCATCACGAGGGTGTCAAAGCCTTTCCGAGACTGCTTAT
CTATTCGCTTTCTCGTATCCGTCCACCACTGCACCAATCTTGAGTCATTTGTTGGGCAAAGGTCGGCCGTCAAACCCACC
CTAGTAGTGCAGCGGAACCACACTTGCCGCGAGAACACGCACTGCAGCAAAATGTGGTCAATTGTATCCTCCTCCTGGTC
ACACATGTAACATTTTGATGCTTGGTCTTGCAATCCATGCCTAGCTCTCCTGTCCGAGGTCCATAAACGATATTGCACCG
CAAGCCACATGAATAGCTTGCACGCAAGCGGTGCCCAACACTTCCATATGGCTCCGAAGCAATGGAATCTGACTCCTCCC
TCGCATAGCATCTTGTACGCAGATGATGTCGTGTAGACTCCGGACGTGTTCCAAGCCCAGATGGGGCAGTCCTCGACCTG
AGCGTCCAAATGAACTTCCAAGAGAATCTCCCAAAGGCCGATGAACTGTGTGAGACCCTCAGTGCATAGATCGCCCATTA
CATCGTCCATCCATGAATGCATGCACATCGCATCTCGCACAAGTCTCCTGTTTACCACTTGTGTCCGCACCTTTGCCACA
ACCAAGGGTGCAAAATCTTTAATAGCTGCTCCATGTATCCATCGGTCTTTCCAGAACAAGGTCTTGCCTCCTGAACCAAC
TTCCCATTTGACAAGGCTTCCAAAAGCTTGATCCACCTTTTTGTCCGAGGTCAGATTGAGGCCTTGCCACAGCCTGGAAT
CATCAGTGCGTCTGAGCCATTCCCATCTAAGTCTTAAAGCGATACCGTGCTTAGCCAGGTCAATGACTCCCAAGCCTCCC
AAGTGTTTAGGCCTGCACACTCTAGCCCAGGAGACGACACATTTGCCTCCATTCACCGCCTCGGTTCCGGCCCAGAAAAA
TGCCCGACACCCCTTGTCCACTCTCTCCAGAGCCCATTTAGGTGCCTCCGCTATCATGAGATGATGTGTAGCGCGCGCCC
TCAAGTAGCTACTACTGTCAAGTGTCTAATACTGCGAATGGGTTCACTGTCTTCGGATTGGCTCCCTGTGTTCGTTAGTT
TAGGAGTACCTGTCATTGCAGGTGCGAGAGCTAAGGTTGCCTTCAGATTTTTATGAAGGTAGTTTCGCGTGTTTGAGAGT
TATTTTTTTTTAGAATAACAGTACTTCGTCGATTGATGAACATCATGACAAAGCTCGTCTCTGATACAATCCGGAACCAC
ACCACGATAAATACGATTTACATCCTGCTCACAACTCCGAGCTAATTTGTGTGCCGCTACATTCAAATCATGCCTGACAT
GTAAGAAAGAACATCGAGTAAACCCGAACGTGAGAGACTCGATGCCAGCGACAACATACCCCACTCTT-
>SNPs
----------S---------------S----------------------S--SSS-SS---S-S----------------
----------------------------------------S---------------------------------------
--------------------------S-----------------------------------------------------
--------------------------S-----------------------------------------------------
--------S---------------S--S---------------------S---------S--------------------
-------------------------S-S----S----------S--------S-----S---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------SSSSSSS-
--------SS--------------------------------SSSS----------------------------------
------------------------------------------------------------S---------S-S-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------S-------S----------------------S-----------
--------------------------------------------------SSS---------------------------
---------------------------------S----------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------S---SSSSSSSSSS-SSS--------S------------------
--------------------------------------------------------------------------------
-------S----------------------------------------------------------------S--S----
-------------------------------------------------S------------------------------
------------------------------------------------------S-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------S-----------
---S----------------------------------------S-S---------------SS-----SS---------
--------------------------------------------------------------------------------
------------------------------S--------------------------------------------S----
--------------------------------------------------------------------------------
-----------------S--------------------------------------------------------------
---------------------------------------------------S----------------------------
-----------------------S--S-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------SS---S-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------S-------------------------------------
----------------------------------------------------------------S---------------
-S----------S-------------------------------------------------------S-----------
----S--------------------------S------------------------------------------------
----S----------S-----------------------------------------S----------S
>forward_64
--------------------------------------------AGAGAAAGGGGGTTGGGGTA----------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------
>reverse_1815
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------CATGAAAACAACCCCACACCC-----
--------------------------------------------------------------------------------
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---------------------------------------------------------------------
>forward_453
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------TTCCGCGTTTCTTTTTCCCC---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------
>reverse_2431
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TGCCCATCCTTTGACAATCGT-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------
>forward_1730
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------ACCAAATCACCCAGATCGTCT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------------------------------------------------------------
>reverse_4629
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------GTCCGGAACCAC
ACCATGAT------------------------------------------------------------------------
---------------------------------------------------------------------
