>input_sequence_64966
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---------------------------------------------------------------------ATGGGTTTCTT
GATCTGCGCCTGCCTCCTCCAGCTGCTCTTCTTGGGCTCTTCTCCGGCGGCGGCGCAGTCGCCGTCGCCGGCGAGGGCCC
TGGACGCAATGCTGCAGGACTACGCGTACCGGGCCTTCGTCCGGCCGCACACCGGCATTGTCTACAACGGCACCGTGCCT
GCGGACCTCGCCGGCGTCGCGGTGTCCGGGCTCCGCCTGCGCAGCGGCAGCCTACGGAGGAAAGGCTTCTCCGACTACTT
CGAGTTCAGCTTCCCCCCTGGCGTCATTGTGCAGCCGTACGTCGAGAGGGTGGTGCTCGTGTACCACAACCTGGGCGAGC
TCTCGGAGAAGTACTACCCGCTCCCCGGCTACACCTACCTCTCGCCCATTCTCGGGCTGCTGGTCTACGACGCTGCCAAC
TTGTCAGCGGTGGGGTTGTCTGAGCTGAGCATCGTCGCGTCAGGGAGCCCGATTTCTGTGAGTTTCAGCAATGTGAGGGC
GGTGCCCTCAGGCAGTCCAGCGCCGCAGTGTGTGTGGTTTGATTTGGATGGCGTGCCACAGTTCCGGGGCTTGGAGGCAA
ACAACGTGTGTGCAACGTATCGCCGAGGGCACTTCTCCATAGTGGTGAACTCCAGTGATGTTGCTCCTGCTCCAGGGCCT
TCAGGCGCAATTGCCCCACTGATACCGACTGATGGTGGTCGTAATAAGGGTAGTTCGGACGCATGGAAGATTGCTGTCGG
TGTTGTTGGGGGCGTCATTGCATTGGGGCTGTTGGCTTTGCTTCTGGTGTGTTTTGTCAGATATAAAAGGGAAAAGAAGA
TGGAGGTGATGGAACGAAATGCAGAGGTCGGGGAGACTTTGCGCATGGCGCAGGTTGGGCGGTCGCAAGCGCCTGTAGCG
TTGGGAACGCGAACAAAACCTGTGATTGAGAGTGAGTATGTTGCATAG--------------------------------
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>chr4B_1_TraesCS4B01G122400
TGATAACCAGTTCTCGAATCCAGTTGTTGGCAAAGGACTCGACAAAAGTTTAGCAATCACTCTCACTGCCGGTGGGCTTC
AGCTCAGGGGTCCCACACCTCAGCGACCTACAAACATAGGGCTTTACAAAAAGACC---CCACCTCGCAAATCATCTCTC
TCAGGACAGGAGCATCCAAACGTTGGGAACAAAGGCGTTCTCCGCCGGCCGCTCGAGCTGGCACGCCCGGCCCCACAGGT
CAGTCAGCAGCACTGCCATC-TTACAGAAAAG-ACCCCTCTGATCTCCCGTGTACAAACGAAGACCTCACAGCTGGACCC
CAGTCTCCAGCGAGCAGAAGCAGCAGAAGGCCAGCTGTCCGGGGGCAGACCGGTAACTCCGCAGGGGCGGACGTGCCAAC
TGTGAGCTCGCGTATTTTATTGCGGGAAAA-ACCAGGGGGGGATTTATTTCCATCCGAGCCCCTGAAAAAATGCGTCCCC
ATTAAAACCTCTCTCCTTCCTTCCTGTCTCTCTCTCTCTCCCTAAAATCTCTCTCCCTCACCTCACTCTCTCTCCA-CCC
GACCCCCGCTGCCGAATCCCCAAACCCC-GCCGTCGCAATCATCCGCAC----------GCGCGCGCGGATTTCTGTGGA
CTCCGGCGTCCCCGGCCCGGATTGATCCCGCCGCTCCTCCTCCCCTCCTCCCGATTCTCGCCATCCAATCTTT----TGC
TCCCTTCCTTTCCCGGCCGCCTCCCTGGTTTCTTGCCGAAATTGCCTGCCACCTGTTTGGACTCTGGACGCGCGCATAAC
TTCCCTCGCCATTGTGGCTGCTCTGCTCAGCCCGGCTGCTTCTTTGGATCTGCTAGCTGGCCTGCCGCCGGCCTCCGGGC
CGCGCATGCCCGTCCTCCCCCGCTCCAAATATCGTCCTTGTTTCGGAGGTCC---TCGTATGCGGATGAGGAGGGGATCC
TGACCTGACTCTTGCTGGGCTCCGGCGGTTCCCTTCTTGGATCCTT----GCGGCGGAGGCGTGCCGGGATGGGTTTCTT
GATCTGCGCCTGCCTCCTCCAGCTGCTCTTCTTGGGCTCTTCTCCGGCGGCGGCGCAGTCGCCGTCGCCGGCGAGGGCCC
TGGACGCAATGCTGCAGGACTACGCGTACCGGGCCTTCGTCCGGCCGCACACCGGCATTGTCTACAACGGCACCGTGCCT
GCGGACCTCGCCGGCGTCGCGGTGTCCGGGCTCCGCCTGCGCAGCGGCAGCCTACGGAGGAAAGGCTTCTCCGACTACTT
CGAGTTCAGCTTCCCCCCTGGCGTCATTGTGCAGCCGTACGTCGAGAGGGTGGTGCTCGTGTACCACAACCTGGGCGAGC
TCTCGGAGAAGTACTACCCGCTCCCCGGCTACACCTACCTCTCGCCCATTCTCGGGCTGCTGGTCTACGACGCTGCCAAC
TTGTCAGCGGTGGGGTTGTCTGAGCTGAGCATCGTCGCGTCAGGGAGCCCGATTTCTGTGAGTTTCAGCAATGTGAGGGC
GGTGCCCTCAGGCAGTCCAGCGCCGCAGTGTGTGTGGTTTGATTTGGATGGCGTGCCACAGTTCCGGGGCTTGGAGGCAA
ACAACGTGTGTGCAACGTATCGCCGAGGGCACTTCTCCATAGTGGTGAACTCCAGTGATGTTGCTCCTGCTCCAGGGCCT
TCAGGCGCAATTGCCCCACTGATACCGACTGATGGTGGTCGTAATAAGGGTAGTTCGGACGCATGGAAGATTGCTGTCGG
TGTTGTTGGGGGCGTCATTGCATTGGGGCTGTTGGCTTTGCTTCTGGTGTGTTTTGTCAGATATAAAAGGGAAAAGAAGA
TGGAGGTGATGGAACGAAATGCAGAGGTCGGGGAGACTTTGCGCATGGCGCAGGTTGGGCGGTCGCAAGCGCCTGTAGCG
TTGGGAACGCGAACAAAACCTGTGATTGAGAGTGAGTATGTTGCATAGTTGATTTTTGGTGTTCTGCAGAATTCAAGCAA
CAGCAACAATGCTCTATGATGATGCCCTGAGATGTGGAATTGTCCACCGGTCAGTTGAGGCAGAAAGCATTCGATGTCAG
TGAGGGTGCTGTGAATTGCTAGGTTTAGGGTTCAGCTGCTGCTCCTTGCGGGTAGCAAATTCTTTTGGCGGTTCTTATTA
GGACTTGAATTGTTCTGCAATGGTTACTGTTGATGTTCATAGTCGCCATGTTCCTTGTTGGGTTCATCTGCAAGCAAGCA
ATGGAGAAGAGATATTTGTCATGCCTGATTTGGAATCCTTCGATTATTTTTTCATTGTTGTATTCAAAAGGAAAATGGGC
CTGGCAATAAGGCTGAGGTAATATTCATTGCACATGCCATTGTGCTGTTCCAGTGAACTTCATACAGGTTCCAACTCAAT
TCCATTTTGGTGCCTTTTAGCTTCTCCTGTTTGGACACATGTTTAATACAATGTAAATGTTTACTCATTTAGTTTGGTTT
GGTAACTAATCTGCTTATTTAGATTTCATTGTTGCTTGGTTTAG-CATGCAGTCTGTATGCAGTGAGAACCTTCCTTTT-
TCTTCTCAGAAAGGTTCTCATTTCTGGCTGTACCTTCTTGATGATCGAACCTTGTGATTTAACAATTAACATGCAGTCTG
TGTGCAGTCTGTGTGCAGTGAGAACTTTCCTCTGTCTTCTGAGAAATGTTCACATTTCTAGTTGTACCTGATTGATGATC
GAACCTTGTGATCTAACATTTAGTCTGTGTGCAATGAAAATTTTCCTTTGTCTTCTTAGAGATATACGCATTTCTAGCTG
TACTTTTTTGATGATCGAACCTTATGA-TTTGTTTCCAAAGTAATACTAAACTCTT-GAACTTACAAGGGTGTCATTGTT
ATTGTTTGTCATTAACAATTTATGTTTCTTTCATGCTGAGTTGGGTAAGAATGGCTTGAATGCAGCTTTGTAAAATAGCA
AAAGAATGTATA
>chr4D_1
TGATAACCAGTTCTCGAATCCAGTCGTTGGCAAAGGACTCGACAAAAGTTTAGCAATCACGCTCACTGCCGGTGGGCTTC
AGCTCAGGGGTCCCACACCTCAGCGACCTACAAACACACGGCTTTACAAAAAGACC---CCACCTCGCAAATCATCTCTC
CCAGGACAGGAGCATCCAAACGTTGGGAACAAAGGCGTTCTCCGCCGGCCGCTCGAGATGGCTCGCCCGGCCCCACAGGT
CAGTCAGCAGCACCGCCATT-TTACAATAAAG-CCCCTTCTGATCTCCCGTCCACAAACGAACCCCTCACACCTGGACCC
CACTCTCCAGCGAGCAGAAGCAGCAGAAGCCCAGCTGTCCAGGGGCAGAGCGGTAACTCCGCAGGGGCGGACGTGCCAAC
TGTGAGCCCGCGTATTTTATTGCGGGAAAA-ACCAGGGAGAAATTTATTTCCATCCGAGCCCCTGAAAAAATGCGTCCCC
ATTAAAACCTCTCTCCTTCCTTCCTGTCTCTCTCTCTC--CCTAAAATCTCTCTCCTTCACCTCACTCTCTCTCCACCCC
GACCCCCGCTGCCGAATCCCCAAACCCCCGCCGTCGCAATCATCCGCCCGTGGGGGCAGGCGCGCGCGGATTTCTGTGGA
CTCCGGCGTCCCCGGCCCGGATTGATCCCGCCGCTC---CTCCCCTCCTCCCGATTCTCGCCATCCAATCCTT----TGC
TCCCTTCCTTTCCCGGCCGCCTCCCTGGTTTCTTGCCGAAATTGCCTGCCACCTGTTTGGACTCTGGACGCGCGCATAAC
TTGCCTCGCCATTGTGGCTGCTCTGCTCAGCCCGGCTGCTTCTTTGGATCTGCTAGCTCGCCTGCCGCCGGCCTCCGGTC
CGCGCATGCCCGTCCTCCCCCGCTCCGAATCTCGTCCTCGTTTCGGAGGTCC---TCGTATGCGGATGAGGAGGGGATCC
TGACCTGACTCTTGCTCGGCTCCGGCGGTCCCCTTCTTGGATCCTCGCTCGCGGCGGAGGCGTGCCGGGATGGGTTTCTT
GATCTGCGCCTGCCTCCTCCAGCTGCTCTTCTTGGGCTCTTCTCCGGCGGCGGCACAGTCACCGTCGCCGGCGAGGGCCC
TGGACGCAATGCTGCAGGACTACGCGTACCGGGCCTTCGTCCGGCCGCACACCGGCATTGTCTACAACGCCACCGTGCCT
GCGGACCTCGCCGGCGTCGCGGTGTCCGGGCTCCGCCTGCGCAGCGGCAGCCTGCGGAGGAAAGGCTTCTCCGACTACTT
CGAGTTCAGCATCCCCCCTGGCGTCATCGTGCAGCCGTACGTCGAGAGGGTGGTGCTCGTGTACCACAACCTGGGCGAGC
TGTCGGAGAAGTACTACCCGCTCCCCGGCTACACCTACCTCTCGCCCATTCTCGGGCTGCTGGTCTACGACGCTGCCAAC
TTGTCAGCAACGGGATTGTCCGAGCTGAGCATCGTCGCGTCAGGGAGCCCGATTTCTGTGAGTTTCAGCAATGTGAGGGC
GGTGCCCCCAGGCAGTCCAGCGCCGCAGTGTGTGTGGTTTGATTTGGATGGGGTGCCACAGTTCCGGGGCTTGGAGGCAA
ACAACGTGTGTGCAACCTATCGCCGAGGGCACTTCTCCATAGTGGTGAACTCCAGTGAGGTTGCTCCTGCTCCAGGGCCT
TCAGGCGCAATTGCCCCACCAATACCGACTAATGGTGGTCGTGATAAGGGTAGTTCGGACGCATGGAAGATTGCTGTCGG
CGTTGTTGGGGGCGTCATTGCATTGGGGCTGTTGGCTTTGCTTCTGGTGTGTTTTGTCAGATATAAAAGGGAAAAGAAGA
TGGAGGTGATGGAACGAAATGCAGAGGTCGGGGAGACTTTGCGCATGGCGCAGGTTGGGCGGTCGCAAGCGCCTGTAGCG
TTGGGAACGCGAACAAAACCTGTGATTGAGAGTGAGTACGTTGCCTAGTTGATTTTTGGTGTTCTGCAGAATTCAGGCAA
CAGCAGCAATGCTCTATGATGATGCCCTGAGATGTGGAATTGTCCACCGGTCAGTTGAGGCAGAAAGCATTCCATGTCAG
TGAGGGTGCTGTGAATTGCTAGGTTTAGGGTTCAGCTGCTGCTCCTTGCGGGTAGCAAATTCTTTTGGCGGTTCTTATTA
GGACTTGAATTGTTCTGCAATGGTTACTGTTGATGTTCATAGTCGCCATGTTCCTTGTTGGGTTCATCTGCAAGCAAGCA
ATGGAGAAGAGATATTTGTCATGCCAGATTTGGAATCCTTCGATTATTTTTTCATTGTTGTATTCAGAAGGAAAATGGGC
CTGGCAATAAGGCTGAGGTAATATTCATTGCACATGCCATTGTGCTGTTCCAGTGAAATTCATATAGGTTCCAACTCAAT
TCCATTTTGGTGCCTTTTAGCTTCTCCTGTTTGGACAAATGTTTAATACAATGTAAATGTTTACTCATTTAGTTTGGTTT
GGTAACTAATCTGCTTATTTAGATTTCATTGTTGCTTGTTTTAA-CATGCGGTCTGTATGCAGTGAGAACCTTCCTTTTT
TCTTCTCAGAAAGGTTATCATTTCTGGCTGTACCTTCTTGATGATCCAACCTTGTGATTTAACAATTAACATGCAGTCTG
-----------TGTGCAGTGAGAACTTTCCTCTGTCTTCTGAGAAATGTTCGCATTTCTAGCTGTACCTGATTGATGATC
GAACCTTGTGATTTAACATTCAGTCTGTGTGCAATGAAAATTTTCCTTTGTCTTGTTAGAGATGTATGCATTTCTAGCTG
TACTTTCTTGATGATCGAACCGTATGA-TTTGTTTCCAAAGTAATACTAAACTCTTGGAACTTACAAGGGTGTCATTGTT
ATTGTTTGTTATTAACAATTTTAGTTTCTTTCATGCTGAGTTGGGTAAGAATGGCTTGAATGCAGCTTTATAAAATAGCA
AAAGAATGTATA
>chr4A_1
TGATAACCAGGTCTGGAATCCAGTCGTTGGCAAAGGACTCGACAAAAGTCTAGCAATCACGCTCACTGCCGGTGGGCTTC
AGCTC---GGTCCCACACCTCAGCGACCTACAAACATAGGGCTTTACAAAAAGACCGCACCACCTCGCAAATCATCTCTC
TCAGGACAGGAGCATCCAAACGTTGGGAGCAAAGGCGTTCTCCGCCGGCCGCCCGAGCCGGCACGCCCGGCCCCACAGGT
CAGTCAGCAGCACCGCCATTCTTACAGAAAAGCCCCCCTCCGATCTCCCGTACACAAACGAACCCCTCACGGCTGGACCC
CACTCTCCAGCGAGCAGAAGC---------CCAGCTGTCCAGGGGCAGAGCGGTAACTCCGCCGGGGCGGACGTGCCAAC
TGTGAGCCCGCGTATTTTATTGCGGGAAAAAACCAGGGGGGGATTTATTTCCATCCGAGCCCCTGAGAAAATGCGTCCCC
ATTAAAACCTCTCTCCTTCCTTCCTGTCTCTCTCTCTC--CCTAAAATCTCTCTCCTTCACCTCACTCTCTCTCCACCCC
AACCCCCGCTGCCGAATCCCCAAACCCCCGCCGTCGCAATCACCCGCCCGTGGGGGCAGCCGCGCGCGGATTTCTGTGGA
CTCCGGCGTCCCCGGCCCGGATTGATCCCGCCGCCCCTGCTCCCCTCCTCCCGATTCTCGCCATCCAATCCTTCCTTTGC
TCCCTTCCTTTCCCGGCCGCCTCCCTGGTTTCTTGCCGAAATTGCCTGCCACCTGTTTGGACTCCGGACGCGCGCATAAC
TTGCCTCGCCATTGCGGCTGCTCTGCTCAGCCCGGCTGCTTCCTTGGATCTGCTAGCTCGCCTGCCGCCGGCCTCCGGGC
CGCGCATGCCCGTCCTCCCCCGCTCCGAATCTCGTCCTCGTTTCGGAGGCCCTCGTCGTATGCGGATGAGGAGGGGATCC
TGACCTGACTCTTGCTCGGCTCCGGCGGTCCCCTTCTTGGATCCTCGCTCGCGGCGGAGGCGTGCCGGGATGGGTTTCTT
GATCTGCGCCTGCCTCCTCCAGCTGCTCTTCTTGGGCTCTTCTCCGGCGGCGGCGCAGTCGCCGTCTCCGGCGAGGGCCC
TGGACGCAATGCTGCAGGGCTACGCGTACCGGGCCTTCGTCCGGCCGCACACCGGCATTGTCTACAACGGCACCGTGCCC
GCGGACCTCGCCGGCGTCGCGGTGTCCGGGCTCCGCCTGCGCAGCGGCAGCCTGCGGAGGAAAGGCTTCTCCGACTATTT
CGAGTTCAGCATCCCCCCTGGCGTCATCGTGCAGCCGTACGTGGAGAGGGTGGTGCTCGTGTACCACAATTTGGGCGAGC
TGTCGGAGAAGTACTACCCGCTCCCCGGCTACACCTACCTCTCGCCCATTCTCGGCCTGCTGGTCTACGACGCTGCCAAC
TTGTCAGCAGCGGGGTTGTCCGAGCTGAGCATCGTCGCGTCAGGGAGCCCCATTTCTGTGAGTTTCAGCAATGTGAGGGC
GGTGCCCCCAGGCAGTCCAGCGCCGCAGTGTGTCTGGTTTGATCTGGATGGCGTGCCACAGTTCCGGGGCTTGGAGGCAA
ACAACGTGTGTGCAACGTATCGCCGAGGGCACTTCTCCATAGTGGTGAACTCCAGTGAGGTTGCTCCTGCTCCAGGGCCT
TCAGGCGCAATTGCCCCACCGATACCGACTAATGGTGGTCGTGATAAGGGTAGTTCGGACGCATGGAAGATTGCTGTCGG
CGTTGTTGGGGGCGTCATTGCATTGGGTCTGTTGGCTTTGCTTCTGGTATGTTTCGTCAGATATAAAAGGGAAAAGAAGA
TGGAGGTGATGGAACGAAATGCGGAGGTCGGGGAGACTTTGCGCATGGCGCAGGTTGGGCGGTCGCAAGCGCCTGTAGCG
TTGGGAACGCGAACAAAACCTGTGATTGAGAGCGAGTATGTTGTGTAGTTGATCTTTGGTGTTCTGCAGAATTCAGGCAA
CAGCAGCAATGCTCTATGATGATGCCCTGAGATGTGGAATTGTCCACCGGTCAGTTGAGGCAGAACGCATTCCATGTCAG
TGAGGGTGCTGTGAATTGCTAGGTTTAGGGTTCAGCCGCTGCTCCTTGCGGGTAGCAAATTCTTTTGGCGGTTCTTATTA
GGACTTGAATTGTTCTGCAATGGTTGCTGTTGATGTTCATAGTCGCCATGTTCCTTGTTGGGTTCATCTGCAAGCAAGCA
ATGGAGAAGAGATATTTGTCATGCCAGATTTGGAATCCTTCGATTATTTTTTCATTGTTGTATTCAGAAGGAAAATGGGC
CTGGCAATAAGGCTGAGGTAATATTCATTGCACATGCCATTGTGCTGTTCCAGTGAAATTCATACAGGTTCCAACTCAAT
TCCATTTTGGTGCCTTTTAGCTTCTCCTGTTTGGACAAATGTTTAATACAATGTAAATGTTTACTCATTTAGTTTGGTTT
GGTAACTAATCTGCTTATTTAGATTTCATTGTTGCTTGTTTTAAACATGCAGTCTGTATGCAGTGAGAACCTTCCTTTTT
TCTTCTCAGAAAGGTTCTCATTTCTGTCTGTACCTTCTTGATGATCCAACCTTGTGATTTAAGAATTAACATGCAGTCTG
-----------TGTGCAATGAGAACTTTCCTCTGTCTTCTGAGAAATTTTCGCATTTCTAGTTGTACCTGATTGATGATC
GAACCTTGTGATTTAACATTCAGTCTGTCTGCAATGAAAATTTTCCTTTGTCTTCTTAGAGATGTACGCATTTCTAGCTG
TACTTTCTTGATGATCGAACCTTATGATTTTTTTTCCAAAGTAATACTAAACTCTT-GAACTTACAAGGGTGTCATTGTT
ATTGTTTGTCATTAACAATTTTAGTTTCTTTCATGCTGAGTTGGGTAAGAATGGCTTGAATGCAGCTTTATAAAATAGCA
AAAGAATGT---
>SNPs
------------------------S-----------------------------------S-------------------
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-------------S-----S-------------S-----------------SS---------SS----------------
--S--------------------------S----------S--------S------------------------------
-------S------------------------------------------------------------------------
--------------------------------------SS----------------S-----------------------
-----------------------------------------------S--------------------------------
--------------------------------------S-------------------------------S---------
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--S-------------------------------------------------------S---------------------
--------------------------S---S-------S-----------------------------------------
----------------S------------S---------------S----------------------------------
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-----------------------------------------------------S--------------------------
----------S----------------S----------------------------------------------------
-S------------------------------------------------------------------------------
--------S-S---------S-----------------------------------------------------------
-------S------------------------------------------------------------------------
----------------------------------------------------------S---------------------
-------------------S----------S-----------S-------------------------------------
S-------------------------------------------------------------------------------
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--------------------------------------------S------------------------------S----
-----S------------------------------------------------------------------S-------
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-------------------------S----------------------------------------S-------------
---------------------------------------------------------S----------------------
-------------------------------------S------------------------------------------
--------------------------------------S----S------------------------------------
----------------------------------------------S---------------------------------
SSSSSSSSSSS----------------------------------------S----------------------------
------------S-------S------------------------------------------S----------------
------S-------------------------------------------------------------------------
---------------------SS----------------------------------------------S----------
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>forward_977
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-----------------------------------------------------------------------------TCC
TGACCTGACTCTTGCTG---------------------------------------------------------------
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>reverse_2073
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------------------------------------------------------------------------GATGTCAG
TGAGGGTGCTGT--------------------------------------------------------------------
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