>input_sequence_64965
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---------ATGCATTTC-ATTCTCTATAGCTTCTA-------CTACAAATTGTTGATCTTGCTAGTAGCTATGGATCCT
AATGGCTCCTATCCTAACATTTTGCCCTTGCTAGTAGCTATGGATCCTAATGGCTGCTATCCTAACATTTCC--------
----------------------------------------CCCTTGCATCAAGCATTGAGAGGCACGACAGCCATGCCGA
TATTAAAAGATTTTGTTGCCCTTGAATCCCCACCATCAGATTCACCTTCAATAGGAAATTCCTCACCAACCATCCATGCA
CCACAAGAAGCTACCGTGATGTCGGTCAATGATAGATCCATGATTCCATACCAATCACATACACACCTCGCACCACTACC
CCCACAATTGGGTGATACGATCCCTAATCCTTTATCCTTGGACAAAAGAGAAATGTTCTCACATGAAGAATTCCTCACAA
ATCCTTTTTGGAATGACTTCGACTCATCTCATCAGAGGCA-AAATTTGTCCATGGAGGATTCATTCTTCACATCGTTACT
CCAAACAGAACCAAAATTAATTGTTCATTCTCGACTTACCGCTATGGGAGAGCCGGATGATGGTTCCATCTTTAAGATGG
ACATCAAGCATGTCTCAGAGGTAAACTCACTACCACATCTTGGTTTCTTTATTATCCTGTAAACA---------TTCACA
CCAAGTACTATGCAGCAGGAACAAAAAATACATGATGGGAGATTATTATTTGATGATTCTCATGGTGTACCTACCCCTGG
TTCTCGAAGCATGCAGTCCTCACCTATTCCAAGAGAAGATAAAATCCCTCTAGTTGGTCCAAATGGCATTTCTGATAGTG
GTATTACACATGGTCCAACAACATCACGCAAGTACACATGCAAGATTTGCAGTGCCACATTCAACTCATCTCAAGCATAT
GGTGGTCACATGAGTTCGCATAGCAAAGCTAGGATGAAAAGCCTACAAAGTTGA--------------------------
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>chr3D_1_TraesCS3D01G158900
TGCCTATGTGGTTCATTGTGCTTACTAATGGATCACAATTATTTCTCCTCGTTGATTACTTGGCATGCTACAGTGCTGCT
ACTAAAAGTTATTGCAGATGAGTGTCGTGTGATTCTGTGAGATGAAAATGACTACCGGCAGACTCGATCAGCTGATCATT
TCATATGATTGACATGCATTTTCTCTATAGTCAAGGTGATTGTGATACGTGTTCTTTTAGAATGAAGCCTGGACTCACTC
TAATCGAGTGTCACGACCTATCCTCCTCCTAGAAACAACTCACATAAACACATAGATTGATATATGTCGTTCAAAGTACA
AACTACTTCTGTGCTTGACTTGTTGACCTACAAAGCTGACTCACTATGCAG--TCTCGGGTCCCCTACGGAAAACATTGA
GGATA-GTTTGGTAGTCTGCAGCAAACATGCGCGGTCCAACTTTGGACCGCTTGGTTGCATGCCTTGCGCTAAAACCTCG
GCCCGCTAGAGAAAGACATATATGGACAATCTTTGCTCTCTTCAT----CTCTGTCTCTCTCTATCTCTATCTCTACC--
----------------TCTCA------AAGATCCATTGCCAATACTAGTTTGGATATATTTTGCAATCTTATAAGGAAGT
TAATTTTTTTGA-AATACGAGAATAAAGTGACATCACTT--------------CATGCAATTTTGTATCAACATACATGT
AT-TTT--CTTCCAACAAAAGAGAACATGCACGGGACCAATTCTTCAATAATCATACCATATATTGCACATGACTAATGC
TAGGTTTTATGAAAGCAGGTGGGGAGATCAAATTTACCAAAAGATCCTAAAAGATCTTGTTAATTATTAGAATTTTGTAT
CCCGTATCACTTATATGTTGTATTAATATCAATTATTAGAATCCATATCTTCTTTGTAATGAGATAATTAAATAGTACAT
GAGTCCATGCACGTCTATAGTTTTGTAAGATCCTTATAAATATCACCTTATGTAATACCCTCCACAAGCATCAAACGACA
TCCTAGCATATGCATTTC-ATTCTCTATAGCTTCTA-------CTACAAATTGTTGATCTTGCTAGTAGCTATGGATCCT
AATGGCTCCTATCCTAACATTTTGCCCTTGCTAGTAGCTATGGATCCTAATGGCTGCTATCCTAACATTTCC--------
----------------------------------------CCCTTGCATCAAGCATTGAGAGGCACGACAGCCATGCCGA
TATTAAAAGATTTTGTTGCCCTTGAATCCCCACCATCAGATTCACCTTCAATAGGAAATTCCTCACCAACCATCCATGCA
CCACAAGAAGCTACCGTGATGTCGGTCAATGATAGATCCATGATTCCATACCAATCACATACACACCTCGCACCACTACC
CCCACAATTGGGTGATACGATCCCTAATCCTTTATCCTTGGACAAAAGAGAAATGTTCTCACATGAAGAATTCCTCACAA
ATCCTTTTTGGAATGACTTCGACTCATCTCATCAGAGGCA-AAATTTGTCCATGGAGGATTCATTCTTCACATCGTTACT
CCAAACAGAACCAAAATTAATTGTTCATTCTCGACTTACCGCTATGGGAGAGCCGGATGATGGTTCCATCTTTAAGATGG
ACATCAAGCATGTCTCAGAGGTAAACTCACTACCACATCTTGGTTTCTTTATTATCCTGTAAACA---------TTCACA
CCAAGTACTATGCAGCAGGAACAAAAAATACATGATGGGAGATTATTATTTGATGATTCTCATGGTGTACCTACCCCTGG
TTCTCGAAGCATGCAGTCCTCACCTATTCCAAGAGAAGATAAAATCCCTCTAGTTGGTCCAAATGGCATTTCTGATAGTG
GTATTACACATGGTCCAACAACATCACGCAAGTACACATGCAAGATTTGCAGTGCCACATTCAACTCATCTCAAGCATAT
GGTGGTCACATGAGTTCGCATAGCAAAGCTAGGATGAAAAGCCTACAAAGTTGATCTTGCCACG--CAGCTAGATATCCC
ATGATTAATATTATTGGGACCAATA-TTTCTTGT--AGCCACACAATGGATGAATGCACAAAGGTTTTAGCGAGGGTGGA
GAAAATTTCTAAGAGGTTATTTATTCCTGGAAACAAAATTATCAATAGAAGCCC--AAGGGTGAAGATATATTATGTGGG
TGTGAAACTATAGGAAATTAT---TT-TCTTGACTATGTTTGTGTTGTTGTTTCCCTATGTTAACAAAAGATCCATCTTT
GATGGTCGTGTACTACACCATATGTTCCA---TATAAGGTGCATCAGTATTCATCTCAGTTAATCTTATGTATGTTTGAT
CTCATGACCAAATTCAATCTCTACAAAATATATTG--TCATCCTACTTAACAATGGAACCTGCACATTCTTCTGGCCACT
ATTCAAGTATTCTCCTGATTAATCAGTTAATGGGCCAGTTAATCGCTACTCATAACATGGCCAAATCGAATAGCACCTAC
TCCCCGTGTTAACTTGTCAGGCCGATTAATTGGCGAGTTACAACCATTAATTAGTTGTCAGGCCG-TTAATCTCTACTGG
CCCATTATCGGGTGGGCAAACAAAGCCCAAGATTTTGGCACGTAACCCCTTCCAGCTCCATCC-GCTCCTTAATAGCTAG
GATTTTAATAATTTTACCTCCTCTCTATGCTTTTAATGTGT--ATGGCAACATGTTTGGGTATACTACATAGCTGGGAGC
ATGAGAGTACGGTATAATAGAAT---AAATCAAGATATATGTTGGCAAGTTCCTATTCAATATACCAACTAATGGTTTA-
-----ATCCGGTTAATAGGTTGATTCATCGATTAATCACTAATCCTAAACCGACCGAGCACCTACCTGTTAACGATTACT
TGAACATTGCTTCTCGCAACGCTTGGCTAATTGACAAATCTCTAGATTTAGCCTACCCACACTTAAACTCTCACTCCACC
GCACCCC-ACATTCTGGTTTCTCGGGTTTTTTTAGGATGGATTC
>chr3A_1
TGCCTATTTTCTTACTTGTGCATACTAATGGGTCACAACTATTTCTCCTCTTTGATTACTTGGCATGCTACAATGCAGCT
GCTAAAAGTTATTGTGGACGAGTGTCGTGTGATTCTATGAGATGAAAATGACTACCGGCAGACTCGATCAGCTCATCATT
TCATATGATTTACATGCATTTTTTGTACAGTCAAGTTGATTGTGATACGCGTTCTTTCAGAATGAAGCTTGGACTCACTC
AAATCGAGTGTCTGGACTTATCCTTCTCTTGGAAAGAACTCACATAAACACATAGATTGATATATGTCGTTGAAAGTACA
AACTACTTTGGTGCTTGACTTGCTGACCTACAAAGCTGACTCACTATACAG--TCTCGTGTCCCCTACGGAAAACATTGA
GGACATGTCTGGTAGTGTGCAACAAACCTGCACGGTGCAACTTTGGACCTTGTGGTTGCCTCCCTTGCGTTGAAATCTCG
GTCCAAGAGAGAAAGACATATATGAACAATCTTTTTTCTCTTCATATCTCTCTCTATCTCTCTATCTCTATCTCTATC--
----------------TTTATCTCTTGCAGATCCATTAGCAATACTAGTTTGCACCTATTTTGCAATCATATAAGGAAGT
TAATTTTTTTGA-AATACGAGAATAAAGTGACATCACTT--------------CATGCAATTTTGTATCAACATACATGT
TT-TTT--CTCCCAACAAAAGAGAACATGCATGGGACCAATTCTTCAATAATCATACCATACATTTCACATGACTAATGC
TAGGTTTTATGAAAGCAGGTGGGGAGGTCAAATATACCAAAAGATCCTAAAAGATCTTGTTAATTATTATAATTTTTTAT
CCCATATCTCCTATATGTTGTATTAATATGAATTATTAAAATCCAGATCTTCTTGGCAATGAGATAATTTAATAGTACAT
GAGTCCATGCACGTCTATACTTCTGTAAGATCCTTATAAATATCATCTTATGTAATACCCTCCATAAGCATTAAACGGCA
TCCTACCACATGCATTCC-ATTCTCTATAGCTTCTA-------CTGCAAATTTTTCATCTTGCTAGTAGCTATGGATCCT
AATGGCTCCTATCCTAACATTT------------------------------------------------CCCCCTTGCC
AGTAGCTATGGATCCTAGTGGCTCATATCTTAACATTTTTCCCTTGCATGAAGCATTGAGAGGCACAACAGCCATGTCGA
TATTAAAAAGTTTTGTAGCCTTCGAATCCCCATCATCAGATTCACCTTCAATAGGAAATTCCTCACCAACCATCCATGCA
CCACAAGGAGCTACTGTGATGTCAGTTAATGAAAGATCCATGGTTCCATACCAATCACATACAGACCTCGCACCACTACC
CCCATAGTTGGGTGATACAATCCCTAATCCTTTATCCTTGGACAAAAAATAAATGTTCTCACATGAAGAATTCCTCACAT
ATCCTTTTTGGAATGAGTTTGACTCATCTCATCAGAGGCA-GAATTTGTCCATGGTGGCTTCATCCTTCACATCGTTACT
CCAAACAGAACCAAAATTAATGGTTCATTCCCAAATTACCGCTATGGGAGAGCCGGATGATGGTTCAATCTTTAAGATGG
ATGTCAAGCATGTCTCCAAGGTAAACTCACTACCA--TCTAGGTTTCTTTGTTATCTTGAAGACATTCACCCCCTTCACA
CCAAGTACTATGCAGCAGGAATGGAACATACAAGATGGGAGATTATTATTTGATGATCCTTATGGTGTACCTACCCCTAG
TTCTCCAGGCATGCGGTCCTCACCTATTCCAAGAGAAGATAAAGTCCCTCTAGTTGGTCAAAATGGCATTTCTGAGAGTG
GTATTACACGGGGTCCTACAACATCACGCAAGTACACATGCAAGATTTGCAGTGCCACATTCAACTCATCTCAAGCATAT
GGTGGTCACATGAGTTTGCATAGAAAAGCAAGGATGAAAAGCCTACAAAGCTGATGTTGCCCCA--TAGCTAGATATCCC
ATGATTAATATTATTGGGACCA--------------------------------TGCACAAAGGTTATAGCAAGGGTGGA
GAAAATTTCTAAGAGGTTATTTATTGCAGGAAACAAAATTATCAATAGAAGCCCG---GGGTGAAGGTATGCTATGTGGG
TGTGAAACTA--GGAAATTAT---TT-TCTTGACTATGTTTGTGTTGTTGTTTCCCTATGTAAACAAAAGAGTCATCTTT
GATGGTTGTGTAATACACCCTATGTTCCA---TATAAGGTGCATCAATATTCATTTCAGTTAATCTTATGTATGTTTGAT
CTCATGACCAAATTCAATCTCTACAAAATATTTTG--TCATACTACTTAACAATGGCACCTCCACATTCTTCTG-CCACT
GTTCAAGTATTCTCTCGATTAATCAGTTAAGGGGCCAGTTAATCGCTACTCCTAGCATGGACGAATCAAATATAACCTAT
TCCCCGTGTTAACTTGTCAGGACGATTAGTTGGCCAATTACATCCATTAATTACTTGCTAGGTCATATAATCCCTACTGG
CCCATTATTGGGTTGGCAAACAAAGCCCAAGATTTTGGCCTGTAACCCCTTCCATCCCCATCCCGCTCCTTAATATCCAT
GATTTCAATAATTTTACCTCCTCCCTATGCTTTTAATATGTGTACACTAACATGTTTGGGTATACTACATAGTTGGGAGC
ATGAGAGTATTGTATAATACATAAAGAAATCTAGATATATGTTGGTAAGTTCCTATTCAATATACCAACTAATGGGTTA-
-----ATCCAGTTAATAGGATGATTCATCGATTAATCGGTACTCCTAAACCGATAGAGTAGCTACATGTTAATGATTTCT
TGAACATTGCTTTTGGCAACTCTTGGCTAATTGACAAACATCTAGCTTTAGCCTACCCCCACTTAAACTCTCATTCCACC
TCA-CCC-ACATTCTAGTTGCTCAGGTTTTGC-AGGATGGATTC
>chr3B_12
TTCCTTGTGGG-----------TACTAATGGATCACAATTATTTCTCCTCTTTGATTACTGGGCATGCTACAGTGCAGCT
ACTAAAAGTTATTGTGGACGAGTGCCGCTTGAT----------------------------------TCAGCTGATCATT
TCATATGATTGACATGCAGTTTTTGTATA-TCAAGGTGATTGCGATATGTCTTCTTTAAGAATGAAGCCTGCACTCACTC
CAATCGAGTGTCACGGCCTATCCTCCTCCTAGAAAGAACGCACATAAACGCATAGATTGGTATATGTCTTTCAAAGTACA
AACTACTTTGGTGCTTGACTTGATGACCTACAGAGTTGACCCACTATGCAGTCTCTCGTGTCCCCTACGGAAAACATTGA
GGATGTGTTTGGTAGTCTGCAGCAAACCTGCGGGGTGCAACTTTGGACCTTTTGGTTGCCTGCCTTGCATCAAAATGTTG
ATCCACGAGAGAAAGACATATATGGAAAATCTTTGCTCTCTCCAT----CT------CTCTATCTATCTATCTCTATC--
----------------TCTCA------CAGATCCATTAGCAATACTAGTTTGGACCTATTTTGCAATCATATAAGGAAGT
T-ATTTTTTTGA-AATACGATAATAAAGTGACATCACTT--------------CATGCAATTTTGTATCAACATACATGT
TT-ATT--CTTCCAACAAAAGAGAACATACATGGGACCAATTCTTCAATAATCATACCATATATTGCACATGACTAATGC
TAGGTTTTATGAAAGCAGGTGGGAAGATCAAATTTACCAAAAGATCGTAAAAGATCTTGTTAATTATTAGAATTTTTTAT
CCCATATCTTTTATATGTTGTATTAATACCAGTTATTAAAATCCAGATCTTCTTGGTAATGAGATAATTAAATAGTACAT
GAGTCCATGCACGCCTATAGTTTTGTAAGATCCTTATAAATATCACCTTATGTAGTAATCTCCATAAGCATCAAACGCCA
TCCTAGCATATGCATTCC-ATTCTCTATAGCTTCTA-------CTTCAAATTGTTGATCTTGCTAGTAGCTATGGATCCT
AATGGCTCCTATCCTAACATTT------------------------------------------------CC--------
----------------------------------------CCCTTGCATGAAGCATTGAGAGGCACGACAGCCATGCCGA
CATTAAAAGATTTTGTAGCCCTTGAATCCCCATCATCAAATTCACCTTCAATAGAAAATTCCTCACCAATCATCCATGCA
CCACGAGAAGCTTATGTGATGTTAGTCAATGATAGATCCATGATTCCATACCAATCACATACAGACCTCGCACCACTACC
CCCACAATTGGGTGATATGATCCCTAATCCTTTATCCTTGGACAAAAAAGAAATGTTCTCACATGAAGAATTCCTCACAA
ATCCTTTTTGGAATGACTTTGACTCATCTCATCAGAGGCA-TAATATTTCCATGGAAGCTTCATCCTTTACATCGTTACT
CCAAACAGAACAAAAAATAATTGTTCATTCCCAAGTTATCGCTATGGGCGAGCCGGATGATGGTTCGATCTCTAAGATGG
ACATCAAGCATGTCTCAAAGGTAAACTCACTACCA--TCTACGTTTCTTTGTTATCCTGAAAAGATTCA-CCCCTTCACA
CCAAGTACTATGTAACAGGAACAGAACATACAAGATGGGAGATTGTTATTTGATGATCCTTATGGTGTACCTACCCCTGG
TTCTCCAGGCATGCGGTCCTCACCTATTCCAAGAGAAGATAAAATCCCTCTAGTTGGTGCAAATGCTATTTCTGATAGTG
GTATTACACATGGTCCTACAACAGCACGCAAGTACAAATGCAAGATTTGCAGTGCCACATTCAACTCATCTCAAGCATAT
GGTGGTCACATGAGTTCGCATAGCAAAGCAAGGATGAAAAGCCTACAAAGTTGATCCTGCCGCA--TAACTAGATAACCC
ATGATTAATATTATTGGGACCAATA-TTTCTCAC--AGCCACACAATGGGTGAATGCACAAAGGTTTTAGCAAGGGTGGA
GAAAATTTCTAAGAGGTTATTTG-TCCTGGAAACAAAATTATCAATAGAAGCCC--AAGGCTGGAGATATGTTATGTGGG
TGTGAAACTATAGGAAATTAT---TT-TCTTGAGTATGTTTCCGTTGTTGTTTCCCTATGTAAACAAAAGAGTCATCTTT
GATGGTTGTGTACTACACCCTATGTTCCA---TATAAGGTGCATCAGTATTCATGTCAATTAATCTTATCTATGTTTCAT
CCCATGACCAAATTCAATCTCTACAAAATATTTTTTTTCATCCTACTTAACAATGGCACCTCCACATTCTTCTGGCCATT
GTTCAAGTATTCTCCCGGTTAATCAGA-------CCAGTTAATGGCTACTCATAGTGTGGCCGAATCAAATAGCACCTAT
T-CCCGTGTTAACTTGTCGA-CCGGTCAATTGACCAGTTACAACCATTAATTACTTCTCAGGCTGATTAATCCCTACTGG
ACCATTATCAGGTGGGCAAACAAAGCTCAAGATTTTGGCCTGTAACCCCTTCTAGCCCCATCCCACTCCTTAATAGCTAG
GAT-TTAATAATTTTACCTCATCTCTATGCTTTTAATATGTGCACGACAACATGTTTGGGTATATTGCATAGCTGGGAGC
ATGAGAGTATGGTACAATACATAAAGAAATCTAGATATATGTTAGCAAGTTCCTATTCAATATACCAACTAATGGTTTA-
-----ATCCATTTAATAGGCTTATTCATCGATTAATCGCTACTCCTAAACCGACCGAGCAACTACCTGTTAACGATTTCT
TGAACATTGCTTCTTGCAACTCTTGGCTAATTGAAAGACCTCTAGATTTAGCCTACCCCCACTTAAACTCTCACTCCACC
TCA-CCCCACATTCTGGTTGCTCGGGTTTTGC-AGGATGGATT-
>chr3D_485
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-------AGAGAAAGACATATATGGACAATCTTTGCTCTCTCTCC----CT------CTCTCCCTCTCTCTCTCTCTCTC
TCTCTGTGTGTGTGTGTCTCA------AAGATCCATTAGCAATACTAGTTTTGACCTATTGTGCCATATATC-------T
TAATTTTTTTGA-AAGCCGAGAATAAACTGACATCGCTTG-TTTAGGAAGACACATGCAACTTTGCATCAATATACATGT
TT-TTTTCCTTCCAATAAAAGAGAAGATGCACAGGACTCAGTCTACAATAATCATACCATATATTGTACATGATTAATGC
CTGGTTTTATGAAAACCAGTGGGGAGACCAGATTAACCAACAGATCCTAGAAGATCTCATTAATTATTAGAAATTTTAAT
ATCATATCTCCTATATATTGTATTAATAGCAATTATTAAAATCCAAATATTCTTGTTAATGAGATAATTAAATAGTACAC
GAGTCCATGCACGTCTATAGTTTTGTAAGATCCTTATAAATATCACCTTATGTAATACCCCACATAAGCATCAAA-GGCA
TCCTATCATATGCATCTCTATTCTCCATAACATCTACTGCAATCTGCAAATTGTTGATATTGCTAGTAGCTATGGATCCT
AATGGCTCCTATCCTAACATTT------------------------------------------------CC--------
----------------------------------------CCCTTGCATGAAGCATTGAGAGGCACGACAACCATGCCGA
TATTGAATGATTTCGTAGACCTTGAATCCCCATCATCATATTCACCTTCGATAGGAAATTCCTCAACAAACATCCATGCA
CCACAAGAAGGTACTGTGATGTCGGTCAATGATAAATCCATGATTCCATACCAATCTAGTGCAGAACTCGCACCACTACC
CCCACAACTGGGTGATACAATCCCTATTCCTTTATCCTCGAACGAAAAAGGAATGTTCTCGCATGAAGACTTCCTCACAA
ATCCTTTTTGGAATGACTTCAACTCATCACATCAGATGCA-GAATTTGTCCACGGAGGCTTCACCATTCACACCCTTACT
CCAAACAGAACCAAATTTAATTGTTCATTCCCAACTTAACACTAATGCGGTGGTGGATGATGGTTCACTCTTTAAGATGG
CCACGAGGGATGTCTCCGAGGTAAGCTCACTACCG--TCTAGGTTTCTTTGTTCTTCTCAAAAGATTCA-CCCCTTCACA
CCAAGTACTATGCAGAAGCAATTGAAGATACAAGATGGAAGATTATCAAATGCTGATCCATATGGTGTACCTGCCCCTGC
TTCTCCAGCCATGCAATCGTCACATATTCAAAGAGAAGATAAGATCCTTCTAGTTGGTCCAAATGGCATTTCTGATAGTG
CTATTATGCATGATTCGACAACCTCACGTAAATACACATGCAAGATTTGCAATGCCACATTCAACACATCTCAAGCGTAT
GGTGGTCACATGAGTTCGCATAGCAAAGCAAGGATGAAAAGCCTACAAAGTTGATCTTCCCATG--TAGCTTGACATCCC
ATGATTGATACTTGTGGGACCAATA-TTTTTC--CTAAGCACACAATGGATGAAGGCACGGTGGTTTCATCGCAAGTGGA
GAAAATTTATAAGAGGTTATTTATATTTGGAAACAAAATTATCAATAGAATAGCATAAGAGTGAAGATATGTTATGTGGG
TGCGAAACTATTGAAAATTAT---TT-TCTTGGCTATGTTTGTTTTGCTATTTCCCTATGTAAACAACATAGTCATCTTT
GATGGTTGTGTACTACTCCCTTGGTTCCAAAATATAAGGTGCATTAGTTTTTGTGCCAGTGAAACTTATGTACATTTGA-
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>chr3A_485
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-------AGAAAAAGACATATATGGACAATCTTTTCTCTCTCTCT----CT------CCCTCCCCAT-------------
-G--TGTGTGTG----TCTCA------AAGATCCATTAGCAATACTAGTTTTGACCTATTGTGCAATCATATAAGTTAAT
---TTTTTTTGA-AAGCCGAGAATAAACTGACATCGCTTG-TT-AGGAAGACACATGCAACTTTGCATCAACATACATGT
TT-TT-TCCTTCCAATAAAAGAGAATATGCACGGGACTCAGGCTACAATAATCATACCATATATTGTACATGATTAATGC
CTGGTTTTATGAAAACCAGTGGGGAGACCAGATTTACCAACAAATCCTAGAAGATCTCATTAATCATTAGAAATTATAAT
ATCATATCTCCAATATATTGTATTAATAGCAATTATTAAAATCCAAATATTCTTGTTAATGAGATAATTAAATAGTACAT
GAGTCCATGCACGTCTATAGTTTTGTAAGATCCTTATAAATATCACCTTATGTAATACCCCACATAAGCATCAAA-GGCA
TCCTAGCACATGCATCTCTATTCTCCATAACATCTACTACA-------AATTGTTGATACTGCTAGTAGCTATGGATCCT
AATGGCTCCTATCCTAACATTT------------------------------------------------CC--------
----------------------------------------CCCTTGCATGAAGCATTGAGAGGCACGACAGCCATGCCGG
TATTGAATGATTTCGTAGACCTTGAATCCCCATCATCATATTCACCTTCGATAGGAAATTCCTCAACAAAAATGCATGCA
CCACAAGAAGGTACCGTGATGCCGGTCAATGATAGTTCCATGATTCCATACCAATCTAGTGCAGAACTCGCACCACTACC
CCCACAACTGGGTGATACAATCCCTATTCCTTTATCCTCAGACAAAAAAGGAATGTTCTCGCATGAAGGCTTCCTCACAA
ATCCTTTTTGGAATGAATTCAACTCGTCACATCAGATGCA-GAATTTGTCCACGGAGGCTTCATCATTCACACCCTTACT
CCAAACAGAGCCAAATTCAATTGTTCATTCCCATCTTTACACTAATGGAGTGTTGGATGATGGTTCACTCTTTAAGATGG
CCACGAGGGATGTTTCCGAGGTAAGCTCACTACCG--TCTAGGTTTCTTTGCTCTTCTCAAAAGATTCA-CCCCTTCACA
CCAAGTACTATGCAGAAGCAGATGAAGATACAAGATGAAAGATTATCAAATGCTGATCCATATGGTGTACCTGCCCCTGC
TTCTCCTACCATGCAATCCTCACATATTCAAAGAGAAGATAAGATCCTTCTAGTTGGTCCAAATGGCATTTCTGATAGTG
CTATTATGCATGATTCTACAACCCCACGTAAATACACATGCAAGATTTGCAATGCCACATTCAACACATCTCAAGCATAT
GGTGGTCACATGAGTTCGCATAGCAAAGCAAGGATGAAAAGCCTACAAGGTTGATCTTCCCATG--TTGCTTGACATCCC
ATGCTTGATACTTGTGGGACCAAT--TTTTTC--CTAAGCACACAATGGATGAAGGCACGGTGGTTTCACCGCAAGTGGA
GAAAATTTATAAGAGGTTATTTATATTTGGAAACAAAATTATCAATAGAGTAGCATAAGAGTGAAGATATGTTATGTGGG
TGCGAAACTATTGACAATTAT---TT-TCTTGGCTATGTTTGTGTTGCTATTTCCCTATGTAAACAACAG--TTATCTTT
GATGGTTGTGTACTACTCCCTCTGTTCCAAAATATAAGCTGCAT------------------------------------
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>chr3A_485
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-------AGAGAAAGACATATATGGACAATCTTTGATCTCTCTCT----CT------CTCTCGCTCTCTCCCTCTCCCTC
CTCATGTGTGTG----TCTCA------AAGATCCATTAGCAATACTAGTTTTCACCTATTGTGCAATCATAT----AAGT
TAATTTTTTTGA-AAGCCGAGAATAAACTAACATCGCTTGTTT-AGGAAGACACGTGCAACTTTGCATCAACATACATGG
-T-TT-TCCTTCCAATAAAAGAGAATATGCACGGGACTCAGGCTACAATAATCATACCATATATTGTACATGATTAATGC
CTGGTTTTATGAAAACCAGTGGGGAGACCAGATTAACCAACAAATCCTAGAAGATCTCATTAATCATTAGAAATTATAAT
ATCATATCTCCAATATATTGTATTAATAGCAATTATTAAAATCCAAATATTCTTGTTAATGAGATAATTAAATAGTACAT
GAGTCCATGCACGTCTATAGTTTTGTAAGATCCTTATAAATATCACCTTATGTAATACCTCACATAAGCATCAAA-GGCA
TCCTAGCACATGCATCTCTATTCTCCATGACATCTACTGCA-------AATTTTTGATACTGCTAGTAGCTATGGATCCT
AATGGCTCATATCCTAACATTT------------------------------------------------CC--------
----------------------------------------CCCTTGCATGAAGCATTGAGAGGCACGACAGCCATGCCGG
TATTGAATGATTTCGTAGACCTTGAATCCCCATCATCATATTCACCTTCGATAGGAAATTCCTCAACAAACATGCATGCA
CCACAAGAAGGTACCGTGATGTCGGTCAATGATAGTTCCATGATTCCGTACCAATCTAGTGCAGAACTCGCACCACTACG
CCCACAGCTGGGTGATACAATCCCTATTCCTTTATCCTCAGACGAAAAAGGAATGTTCTCGCATGAAGGCTTCCTCACAA
ATCCTTTTTGGAATGACTTCAACTCATCACATCAGATGCAAAAATTTGTCCACGGAGGCTTCATCATTCACACCCTTACT
CCAAACAGAGCCAAATTCAATTGTTCATTCCCAACTTAACACTAATGGAGTGTTGGATGATGGTTCACTCTTTAAGATGG
CCACGAGGGATGTTTCCGAGGTAAGCTCACTACCG--TCTAGGTTTCTTTGTTCTTCTCAAAAGATTCA-CCCCTTCACA
CCAAGTACTATGGAGAAGCAGCTGAAGATACAAGATGAAAGATTATCAAATGCTGACCCATATGGTGTACCTGCCCCTGC
TTCTCCTGCCATGCACTCCTCACATATTCTAAGAGAAG-TAAGATCCTTCTAGTTGGTCCAAATGGCATTTCTGATAGTG
TTATTATGCATGATTCTTCAACCCCACATAAATATACATGAAAGATTTGCAATGCCACATTCAACACATCTCAAGCATAT
GGTGGTCACATGAGTTCGCATAGCAAAGCAAGGATGAAAAACCTACAAAGTTGATCTTCCCATG--TAGATTGACATCCC
ATGCTTGATACTTGTGGGACCAAT--TTTT-C--CTAAGCACACAATGGATGAAGGCACGGTGGTTTCACCGCAAGTGGA
GAAAATTTATAAGAGGTTATTTATATTTGGAAACAAAATTATCAATAGAGTAGCGTAAGAGTGAAGATATGTTATGTGGG
TGCGAAACTATTGACAATTAT---TT-TCTCGGCTATGTTTGTGTTGCTATTTCCCTATGTAAACAACAG--TCATCTTT
GATGGTTGTGTACTACTCCCTCATTTCCAAAATATAAGGTGCATTAGTTTTTGTACCAGTCAAACTTATGTACATTTGA-
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>chr3A_485
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--------------------------------------------------------------------------------
-------AGAGAAAGACATATATGGACAATATTTGCTCTCTCTCT----CT------CTCCCTCTCCCTCCCTCCCTCCC
CG--TGTGTGTG----TCTCA------AATATCCATTAGCAATACTAGTTTTGACCTATTGTGCAATCATATAAGTTAA-
----TTTTTTGA-AAGCCGAGAATAAACTGGCATCGCTTGTTT-AGGAAGACACATGCAACTTTGCATCAACATACATGT
TTCTT-TCCTTCCAATAAAAGAGAAGATGCACGGGACTCAGGCTACAATAGTCATACCATATATTGTACATGATTAATGC
CTGGTTTTATGAAAACCAGTGGGGAGACCAGATTAACCAACAAATCCTAGAAGATATCATTAATCATTAGAAATTATAAT
ATCATATCTCCAATATATTGTATTAATAGCAATTATTAAAATCCAAATATTCTTGTTAATGAGATAATTAAATAGTGCAT
GAGTCCATGCATGTCTATAGTTTTGTAAGATCCTTATAAATATCACGTTATGTAATAGCCCACATAAGCATCAAA-GGCA
TCCTAGCACATGCATCTCTATTCTCCATAACATCTACTGCA-------AATTGTTGATACTGCTAGTAGCTATGGATCCT
AATGGCTCCTATCCTAACATTT------------------------------------------------CC--------
----------------------------------------CCCTTGCATGAAGCATTGAGAGGCACAACAGCCATGCCAG
TATTGAATGATTTCGTAGACCTTGAATCCCCATCATCATATTCACCTTCAATAGGAAATTCCTCAACAAACATGCATGCA
CCACAAGAAGGTACCGTGATGTCGGTCAATGATAGTTCCATGATTCCATACCAATCTAGTGCATAACTCGCACCACTACC
CCCACAACTGGGTGATACAATCCCTATTCCTTTATCCTCGGACGAAAAAGGAATGTTCTCGCATGAAGGCTTCCTCACAA
ATCCTCTTTGGAATGACTTCAACTCGTCACATCGGATGCA-GAATTTGTCCACGGAGGCTTCATCATTCACATCCTTACT
CCAAACAGAGCCAAAATCAATTGTTCATTCCCAACTTAACACCAATGGAGTGTTTCATGATGGTTCACTCTTTAAGATGG
CCATGAGGGATGTTTCTGAGGTAAGCTCACTACCG--TCTAGGTTTCTTTGTTCTTCTCAAAAGATTCA-CCCCTTCACA
CCAAGTACTATGCAGAAGCAGCTGAAGATACAAGATGAAAGATTATCAAATGTTTATCCATATGGTGTACCTGCCCCTGC
ATCTCCTGCCATGCAATCCTCACATATTCAAAGAGAAGATAAAATCCTTCTAGTTGGCCCAAATGGAATTTCTGATAGTG
CTATTATGCATGATTCTACAACCCCATGTAAATACACATGCAAGATTTGCAATGCCACATTCAACACATCTCAATCATAT
GGTGGTCACATGAGTTCGCATAGCAAAGCAAGGATGAAAAGCCGACAAAGTTGATCTTCCCATG--TAGCTTGGCATCCC
ATGATTGATACTTGTGGGACCAATA-TTTT-C--CTAAGAACACAATGGATGATGGCACGATGGTTTCACCACAAGCGGA
GAAAAATTATAAGAGGTTATTTATATTTGGAAACAAAATTATCAATAGAGTAGCGTAAGAGTGCAGATATGTCATGTGGG
TGCGAAACTATTGAAAATTAT---TTTTCTCGGCTATGTTTGTGTTGCTATTTCCCTATGTAAACAATAGAGTCATCTTT
GATGGTTGTGTATTACTCCCACGATTCCAAAATATAAGGTGCATTAGTTTTTGTGCTAGTCAAACTTATGTACATTTGA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
>chr3B_504
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------CAATCTTTGCTCTCTCTCT----CT------CTCTCCCTCTCCCCCTCTCTCT-
CG--CGTGTGTG----TGTCA------AAGATCCATTAGCAATACTAGTTTTGACCTATTGTGCAATCATATAACTTAA-
----TTTTTTTGCAAGCCGAGAATAAACTGACATCGCTTGTTT-AGGAAGACACATGCAACTTTGCATCAACATACATGT
TT-TT-TCCTTCCAATAAAAGAGAAGATGCACAGGACTCAGGCTACAATAATCATACCATATATTGTACATGATTAATGC
CTGGTTTTACGAAAACCAGTGGGGAGACCAGATTAACCAACAGATCCTAGAAGATCTCATTAATTATTAGAAATTATAAT
ATCATATCTCCTATATATTGTATTAATAGCAATTGTTAAAATC------TTCTTGTTAATGAGATAATTAAATAGTACAT
GATTCCATGCACGTCTATATTTTTGTAAGATCCTTATAAATATCACCTTCTGTAATACCCCACATAAGCATCAAA-GGCA
TCCTAGCATATGCATCTCTATTCTCCATAACATCTACTGCG-------AATTGTTGATATTGCTAGTAGCTATGGATCCT
GATGGCTCCTATCCTAACATTT------------------------------------------------CC--------
----------------------------------------CCCTTGCATGAAGCATTGAGAGGCACGACCGCCATGCCGA
TATTGAATGATTTCATAGACCTTGAATCCCCATCATCATATTCACCTTCAATAGGAAATTCCTCAACAAACATCCATGCA
CCACAAGAAGGTACCGTGCTGTCGGTCAATGATAGTTCCATGATTCCATACCAATCTAATGCAGAACTCGCACCACTACC
CCCATAGCTGGGTGATACAATCCCTAGTCCTTTATCATTGGATGAAAAAGGAACGTTCTCGCATGAAGGCTTCCTCACAA
ATCCTTTTTGGAATGACTTCAACTCATCACATCAGATGCA-GAATTTGTCAACGGAGGCTTCACCATTCACACCCTTACT
TCAAACAGAACCAAATTCAATTGTTCATTCCCAACTTAACACTAATGGAGTGTTGGATGATGGTTCACTCTTTAAGATGG
TCACGAGGGATGTCTCCGAGGTAAGCTCACTACCA--TCTAGGTTTCTTTGTTCTTCTCAAAAGATTCA-CCCCTTCACA
TCAAGTACTATGCAGAAGCAACTGAAGATACAAGATGGAAGATTATCAAATGCTAATCCATATGGTGTAGCTGCCCCTAC
TTCTCCAGCCATGCAATCCTCACATATTCAAAGAGAAGATAAGATCCTTCTAGTTGGTCCAAATGGCATTTCTGATAGTG
CTATTATGCATGATTCTATAACCTCACGTAAATACACATGCAAGATTTGCAATGCCACATTCAACACATCTCAAGCATAT
GGTGGTCACATGAGTTCGCATAGCAAAGCAAGGATGAAAAGCCTACAAAGTTGATCTTCCCATG--TAGCTTGACATCCC
ATGATTGATACTTGTGGGACCAATATTTTT-C--CTAAGAACACAATGGATGAAGGCACGATGGTTTCATCGCAAGTGGA
GAAACTTTATAAGAGGTTATTTATATTTGGAA---AAAATATCAATAGAATAGCATAAGAGTGAAGATATGTTATGTGGG
TGCGAAACTATCAAAAATTAT---TTT-CGTGGCTATGTTTGTGTTGCTATTTCCCTATGTAAACAACAGAGTCATCTTT
GATGGTTGTGTACTAC----------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------
>chr2A_1385
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------------------------------------------------GAAATGTTCAGGCATGAAGACTTCCTTTCAA
ACCCTTTGTGGAATTACGCTGACTCCTATCATCATACACA-TACCTCGTCCATGGAGTCTCCATCATTCACATCCTTACT
CCAAACAGATCCAAATTCTATTGTTCATACCCACCTTAACACTAATGGAGCAATGGAGGATGGTTCAATCTATGACATGC
CCGCCATACATGTCTCTGAGGTAAACTCACTACCA--TATGGATTTCATTGTTCTCCTGAAAATATTGA-CCCATTTACA
CCGAATACTATATTGCAACAACAGAACATACAAGATGGAAGGCTACTATATGATGCTTCTTATGGTGTACCTGCCCCTAT
TTCTCCATTCATGGCAACCTCACATGTACCAAGAGAATATAACACCCCTCTAGTTGGTCCAAATGGCATTTCTGATAGTG
CTATTTTGCATGATTCTACATCCTTGGGTAATTACACATGCAAGATTTGCGGTCGCAAATTCAACACATCTCAAGCCTAC
GGTGGTCACATGAGTTCCCATGCCAAAGAAAGGAAGAAACACCTACAAAGTTGATCTTCCCATATGTACTTGGACATCCC
ATGATTACCATTCTCGGGACAAAT--ATTT-CTACTAGCACCAAAATGGTTGAAGACCGAGAGCTTCTAGCTCAAGTGGA
GAAATTTTAATAGATTTTATTTGTTTTTGGAAACAAAAATATCAATGGAGTAACATAAGAGTGAGAATATGTTGTGAGGG
TGTGAAACAATTAATAGAACTATCTT-TGTTTGAATGGTATGTGTTGTTGTTTCCATGTTTAACTAATAGATTCATCTTT
AATGGTCGTGTAC-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
>chr5A_2335
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------ATACTTTTGGGCACT
GTTCAAGAATTCACCCGATTAATCAGTTAATGGGCCAGTTAATCGCTACTCAAAGCATGGCCGAATCGAATAACACCTAT
TCGTCGTGTTAACTTGTCAGGCCGATTAATTGGCCAGTTAGATCGATTAATCAGTTGTCATGCCGATTAATCCCTGTTGG
CCCGTTAAC-GGTGGGCAAACAAAGCCCAAAATTTTGGCCCATAGCCCCTTCCGGCACCATGCCGCTCCTTAATAGATAG
GA--TTAATAATTTTACCTCCTCTCTATGCTTTTCATATGTGTATGGCAGCATTTTTTGGTATACTACATAGCTGGGAGT
ATGAGAGTATGGTATAATACATTAAAAAATCTAGATATATGTTGGCAAGTTTCTATTCAATCTACCGAATAATGGTCGAC
CGATTATCCAGTTAATAGGCCAATTCACCGATTAATCGCTACTCCTAAACTGACCGAGCAGCTACCAGTTAACGATTTCT
TGAACATTGCTT--------------------------------------------------------------------
--------------------------------------------
>SNPs
-------S-----SS------S----------------------------S-------------------------S---
--------------SS--S-----------------S-------------------------------------------
----------------------S-S--------------------------------S----------------------
S----------------------------------S--------------------------------------------
--------SS------------S-----------------------------------S---------------------
---------------------------S--------S------------SS--------S---------S-----S----
-S--S-S----------------------------------------------S-S------------------------
-------------------------------------SS---------------SS------------------------
--------------------------------------------------------------------------------
S-------------------------------------------------------------------------------
----------------------------------------------------------------------------S---
---S----S-----------------------------S------S--------S-------------------------
----------------------------------------------------------------S------------S--
---------------------------------------------S----------------------------------
----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------
-------------------------------------------------S------------------------------
----------------S---------------S-----------------------------------------------
---------------------------------------------------------------S----------------
-----------------------------------------------S--------------------------------
----------------------------------------------------------S-----S---------------
------------------------------S-S---------------------------------S-------------
-----------------------------------SS---S---------S--------S--------------------
-----------------------S--S-----S---------------------------S-------------------
-----S--------------------------------------------------------------------------
----------------S---------------------------------------------------------------
-----------------------------S------------------------------------S-------------
-------------------------------SSS----------------------------------------------
----------------------------------------------------------------------S---------
-------------------------------------------------------------S----------S-------
-------------------S----------------------------------S-------------------------
-------------------------------S------------------------S----S------------------
S--------------S--------------------------------------S-------S----------------S
----------------------------------S-------------------------------------S-------
---------------------------------------S----------------S-----------------------
-------------------------------------S------------------------------------------
---------S---------S-S---------S------------------------------------------------
---------S---------S-----------------S---S------------------S----------------S--
--------------S-----S-----------------S-------------------S---------------------
S--S---------------S----------SSS-----------
>forward_77
---------------------------------------------------------ACTTGGCATGCTACAGTGCT---
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------
>reverse_1846
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----GAAGCATGCAGTCCTCACCT-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
>forward_1667
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------GAGAGCCGGATGATGGTTCC-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
>reverse_2975
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------CGCAACGCTTGGCTAATTGA----------------------------------------------
--------------------------------------------
