>input_sequence_64963
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-----------------------------------ATGACGATCGGCGTCTGCTACGGCGTGGTGGCCAACAACCTCCCG
CCGGCGAACGACGTGGTGCAGCTCTACAAGTCCAAGGGCCTCACCGGCATGCGCATCTACTTCGCCGACGCCAAAGCCCT
CTCCGCGCTCCGCGGCTCCGGCATCGCCCTCATCCTCGACGTCGGCGGCACCGACGTGCTGGCCAGCCTCGCCGCCAATG
CCTCCAACGCGGCGAACTGGGTCCGGGACAACGTGCGGCCCTACTACCCGGCCGTGAACATCAAGTACATCGCCGCCGGC
AACGAGGTCCTGGGCGGCGACACGCGGAACATCGTCCCGGCCATGCGGAACCTCAACTCGGCCCTCGCCGGCGCCGGCCT
CGGCCTCGGCGCCATCGAGGTGTCCACCTCGATCCGGTTCGACGCGGTGACCAACACCTTCCCGCCGTCCAACGGCGTGT
TCGCGCAGGCCTACATGACGGACGTGGCCCGGCTGCTGGCGAGCACCGGCGCGCCGCTGCTGACCAACGTGTATCCCTAC
TTCGCCTACAAGGACAACCCGCGGGACATCCAGCTGAACTACGCGACGTTCCGGCCGGGCACCACCGTGCGTGACCAGAA
CAACGGGCTGACCTACACGTGCCTGTTCGACGCCATGGTGGACGCCGTGGTGGCGGCGCTGGAGCGGGCCGGGGCGCCCG
GGGTGAGGGTGGTGGTGTCGGAGAGCGGGTGGCCGTCGGCGAGCGGGTTCGCGGCGACGGCGGACAACGCGAGGGCGTAC
AACCAGGGGCTGATCGACCACGTTGGCGGGGGCACGCCCAAGAGGCCCGGCTTGCTGGAGACGTACATCTTCGCCATGTT
CAACGAGAACTTCAAGACCGGGGAGCTCATCGAGAAGCACTTCGGGCTGTTCAACCCGGACAAGTCGCCGGCGTACCCCA
TCCGGTTCCAGTA-G-----------------------------------------------------------------
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-----------------------------------------------------------------------------
>chr3B_1_TraesCS3B01G533900
TCACAATGCAGTCCATAAATTCGTTTGCGACATGTATTAATATAAGGAATAAAAA--GTTAAACGCGATTGAGGGTACGA
GGGTGACCGGCCGGGCCAAGGCGTGCACGTACGCAGCGCCAAGCTGCTGCACGCACACGCA--TGCATGTGCCAAAT---
-----------------------------------------------------------------------------TAA
GATTTAGCTAGCATGAGCTTAATACTCACATGCATAGGCGGCTAGACTCATCGCTGTCATCATATCTT--ACTTAAATTC
GATCTCATCCACCAT---AACAATGTCAACGGAGTATC-----------------------------------ACTCACA
TGCATAGGCGGCTAGGCTTAGAGGGTGCTTGGATACGTTTTAGTCCCATGACTAAAAGTAGTGGGACTAAAACTTGCTAG
CCTCACCCATACTTGGATACAAATACTAAATAGACTAAAATCGAGTTAATGAGCATTTATCATCCTCCAAACCCTCCAAT
CCAGAACTTGCATGTGTTAAAGGAGAGGAGTTAAATGAGGAGAGAGAGGACTAATCCACATTTTAGTAGGGTTCCCTTGA
CTAAACTTTTTTAGTCTCAAGACTAGTTCTAGCCTCTCTTTAGTCAGAGGTGATTGGAACTTTAGCCTCTAAAAGAGACT
AGTTTTAGTCAGACTAAAAATAGTCCACAAAGA--TTTTCAAGAACTAAATAATGGCCATTGATGTATGTACATACCCAA
CTAGTTGTCGACGAAAAGTCCAACAAGTTTCCAATTTTGTGTATAAACTACATAAATGAAAATCTGGCACGATAGCAGCC
CCTATCACGGACTCATCGTTAGGGATCATGGAATGCTAAGGCTAAGATGAC--------------ACCTAATTCACTAGG
AAGATGGAGCGCCCCTA---------------------------------------------------TCTAATAATGCA
AACATATCACATGCAGAGATGCATC--TCTGGTCTCTCCCTG-----------TATAAATAATCC--CGCGTTTCTTATC
---------------GCAGCAGAGAGAGCAAAGCATCAAGTCATCAACCAGAAATCTAAGCTCGATT-------------
-GTTAGTTTCTTCTCTTTTGACACCGCAGCTAGCCATGACGATCGGCGTCTGCTACGGCGTGGTGGCCAACAACCTCCCG
CCGGCGAACGACGTGGTGCAGCTCTACAAGTCCAAGGGCCTCACCGGCATGCGCATCTACTTCGCCGACGCCAAAGCCCT
CTCCGCGCTCCGCGGCTCCGGCATCGCCCTCATCCTCGACGTCGGCGGCACCGACGTGCTGGCCAGCCTCGCCGCCAATG
CCTCCAACGCGGCGAACTGGGTCCGGGACAACGTGCGGCCCTACTACCCGGCCGTGAACATCAAGTACATCGCCGCCGGC
AACGAGGTCCTGGGCGGCGACACGCGGAACATCGTCCCGGCCATGCGGAACCTCAACTCGGCCCTCGCCGGCGCCGGCCT
CGGCCTCGGCGCCATCGAGGTGTCCACCTCGATCCGGTTCGACGCGGTGACCAACACCTTCCCGCCGTCCAACGGCGTGT
TCGCGCAGGCCTACATGACGGACGTGGCCCGGCTGCTGGCGAGCACCGGCGCGCCGCTGCTGACCAACGTGTATCCCTAC
TTCGCCTACAAGGACAACCCGCGGGACATCCAGCTGAACTACGCGACGTTCCGGCCGGGCACCACCGTGCGTGACCAGAA
CAACGGGCTGACCTACACGTGCCTGTTCGACGCCATGGTGGACGCCGTGGTGGCGGCGCTGGAGCGGGCCGGGGCGCCCG
GGGTGAGGGTGGTGGTGTCGGAGAGCGGGTGGCCGTCGGCGAGCGGGTTCGCGGCGACGGCGGACAACGCGAGGGCGTAC
AACCAGGGGCTGATCGACCACGTTGGCGGGGGCACGCCCAAGAGGCCCGGCTTGCTGGAGACGTACATCTTCGCCATGTT
CAACGAGAACTTCAAGACCGGGGAGCTCATCGAGAAGCACTTCGGGCTGTTCAACCCGGACAAGTCGCCGGCGTACCCCA
TCCGGTTCCAGTA-GTATGGCTGCG------TCGTGCATGTATGCGTGCGTACTTACATACACACGTGCATCGTCAACCT
AAATAAGCTGCGTATAGTGCAGGAGTGAAGTGTAACATGGATACAATATGGGTCTGTGTAGGACACATCTAGTAGATGTG
ACAT--------CACAT--------------------CTGAGCTGATGTCCACTCTGTTTATGGTGTATTTTTTCTTTGT
CCTAGTTATTTTC-T--TATTGCTGCATTATATATATTTATGGAGTTTATATATTGTCTCTCATCCCAGTTAAAAAA---
-----------------------------ATCA----------TCTGTCATGAATAAAGAGAAGGAAATTGAGGCAGTTA
TGAACTTTTTGTGATCCATGCATGCTTTATGTGCAGCGATTCCGC------------------CTCCCACCGAAGGAACA
TCACTTAAAAGCGTGGAATAGATCCAAGAAGATGTGGTTGAAC---ATAGTTGAAATATGTTATATGCACTATAAAAGCA
AAGGCGAAAAAGAACTGCAATTGTGTGTTACTATTTTGCGAGTTAAATTTTTTTCATCCGTCTGTAAATTAGCGATTCTG
TAATTGTAACATGGTAGTTTTAACATTTTTTGTTATCTCATGCAGCGGAACCCCTTCGGATGGACACTGGTGCATTTTTG
CTGACCAAGGCCTTCCTGGATAGATGCAATCATGTGTATGGAGTTATCTTTGTCGAAAAA--TCTGTATGGAGTTATGCC
TCGCACCCAGGAGAACCAGGGCCAACCATTTGTTTCAAAGCACTTCAATGTTATTGATCCCTTAATTACGAGCAAATTAT
TAGCACAAAATATTTATGCAGACCACATCGGCGCATCAAAACTTTCTGGACCATTGCGCCGACGTATCGCTCTAGGAGAT
AGTACTCCTTGGAATAGAGATGGAGAAGAATCAAGGGAACCATTTTATATTGTAAATGCATTTGTAATAGGTTTAATTTG
TAATCAGTTGGGATGGAGAAGAAACAAGTGAATCGAGGGATTAATCCATGCACGTCGTGTGTTCAGCCTGGGTTCGG
>chr3B_1
TCACAATGCAGTCCATAAATTCGTTTGCGACATGTATTAATATAAGCAATAAAAA--GTTAAACGCGATTGAGGGTACGA
GGGTGACCGGCCGGGCCAAGGCGTGCACGTACGCAGCGCCAAGCTGCTGCACGCACACGCA--TGCATGTGCCAAAT---
-----------------------------------------------------------------------------TAA
GATTTAGCTAGCATGAGCTTAATACTCACATGCATAGGCGGCTAGACTCATCGCTGTCATCATATCTT--ACTTAAATTC
GATCTCATCCACCAT---AACAATGTCAACGGAGTATC-----------------------------------ACTCACA
TGCATAGGCGGCTAGGCT--------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------TAGTCCACAAAGA--TTTTCAAGAACTAAATAATGGCCAATGATGTATGTACATACCCAA
CTAGTTGTGGACGAAAAGTCCAACAAGTTTCCAATTTTGTGTATAAACTACATAAATGAAAATCTGGCACGATAGCAGCC
CCTATCATGGACTCATCGTTAGGGATCATGGAATGCTAAGGCTAAGATGAC--------------ACCTAATTCACTAGG
AAGATGGAGTGCCCCTA---------------------------------------------------TCTAATAATGCA
AACATATCACATGCAGAGATGCATC--TCTGGTCTCTCCCTG-----------TATAAATAATCC--CGCGTTTCTTATC
---------------GCAGCAGAGAGAGCAAAGCATCAAGTCATCAACCAAAAATCTAAGCTCGATT-------------
-GT--------------TTGACCCCGCAGCTAGCCATGACGATCGGCGTCTGCTACGGCGTGGTGGCCAACAACCTCCCG
CCGGCGAACGACGTGGTGCAGCTCTACAAGTCCAAGGGCCTCACCGGCATGCGCATCTACTTCGCCGACGCCAAGGCCCT
CTCCGCGCTCCGCGGCTCCGGCATCGCCCTCATCCTTGACGTCGGCGGCAACGACGTGCTCGCCAGCCTCGCCGCCAACG
CCTCCAACGCGGCGAACTGGGTCCGGGACAACGTGCGGCCCTACTACCCGGCCGTGAACATCAAGTACATCGCCGCCGGC
AACGAGGTCCTGGGCGGCGACACGCGGAACATCGTCCCGGCCATGCGGAACCTCATCTCGGCCCTTGCCGGCGCCGGCC-
-----TAGGCGCCATCAAGGTGTCCACCTCGATCCGGTTCGACGCGGTGACCAACAGCTTCCCACCATCCAATGGCGTGT
TCGCGCAGGCCTACATGACGGACGTGGCCCGGCTGCTGGCCAGCACCGGCGCGCCGCTGCTCACCAACGTGTACCCCTAC
TTCGCCTACAAGGACAACCCGCGGGACATCCAGCTGAACTACGCGACGTTCCGGCCGGGCACCACGGTGCGTGACCAGAA
CAACGGGCTGACCTACACGTGCCTGTTTGACGCCATGGTGGACGCCGTGGTGGCGGCGCTGGAGCGGGCCGGGGCGCCCG
GGGTGAGGGTGGTGGTGTCGGAGAGCGGGTGGCCGTCGGCGAGCGGGTTCGCGGCGACGGCGGACAACGCGAGGGCGTAC
AACCAAGGGCTGATCGACCACGTCGGCGGGGGCACGCCAAAGAGGCCCGGCTTGCTGGAGACGTACATCTTCGCCATGTT
CAACGAGAACTTCAAGACCGGGGAGCTCATCGAGAAGCACTTCGGGCTGTTCAACCCGGACAAGTCGCCGGCGTACCCCA
TCCGGTTCCAGTA-GTATGGCTGCG------TCGTGCATGTATGCGTGCGTACCTACGTACACACGTGCATCGTCAACCT
AAATAAGCTGCATATAGTGCAGGAGTGAAGCGTAACGTGGATACCATATGGGTTTGTTTAGGACACATCTA---GATGTG
ACATAGTTATGTCACAT--------------------CTGAGCTGATGTCCACTCTGTTTGTGGTCTATTTTT--TTTGT
CCTATATTTTTTCTT--TATTGCTGCATTATATATTTATG-GGAGTTTA-------------------------------
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-----------------------------------------------------------------------------
>chrUn_1
TCACAATGCAGTCCATAAATTCGTTCCTGACACGTATTTAGATAAGCAATAAAAA--GTTAAACGTGATTGAGAGAACGA
GGGTGACCGGCCGGGCCAAGGCGTGC----ACGCAGCGCCAAGCTGCTGCATGCACACAGA--TGCATTTGCGAAACGAT
CATCGACGACTCGACTAGGTGTAAGAAAGAGACACGGACTT-----ACCAATCATGCATGTGA--------GTCTTGTAA
GATTTA----------------------------------------------GCTGTCATCATATCTT--ACTTAAATTC
GATCTCATCCACCAT---AACAATGTCAACGGAGTATTCTCTTATTGTGCATGCATGAGCTTACTGTACG--TACTCACA
TGCATAGGCGGCTAGGTT--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------TAGTCCACGAAGA--TTTTCAAGAACTAAATAATGGCCATTGATGTATGTACATACCCAA
AGAGTTGTCGACGAAAAGTCCAACAAGTTTCCAATTTTGTGTATAAACTACATAAATGAAAATCTGGCGTGATAGCAGCC
TCCATCGTGAGGGATC----------------------------------------------------------------
-------------------------------------------------ATGGTGGAATAAGGAACTGTCTAATAATGCA
AACATATCACATT----CATGCATC--TCTGGTCTCTCCGTG-----------TATAAATAATCC--CGCGTTTCTTATC
---------------GCAGCATAGAGAGCAAAGCATCAAGTCATCAACCAGAAATTCAAGCTCGATTGTTAGTTTCTTCT
CGT--------------TTGACTCCGCAGCTAGCCATGACGATCGGCGTCTGCTACGGCGTGGTCGCCAACAACCTCCCG
CCGGCGAACGACGTGGTGCAGCTCTACAAGTCCAAGGGCCTCACCGGCATGCGCATCTACTTCGCCGACGCCAAGGCCCT
CTCTGCGCTCCGCGGCTCCGGCATCGCCCTCATCCTCGACGTCGGCGGCAACGACGTGCTCGCCAGCCTCGCCGCCAACG
CCTCCAACGCGGCGAACTGGGTCCGGGACAACGTGCGGCCCTACTACCCGGCCGTGAACATCAAGTACATCGCCGCCGGC
AACGAGGTCCTGGGCGGCGACACGCGGAACATCGTCCCGGCCATGCGGAACCTCATCTCGGCCCTTGCCGGCGCCGGCC-
-----TAGGCGCCATCAAGGTGTCCACCTCGATCCGGTTCGACGCGGTGACCAACAGCTTCCCACCATCCAATGGCGTGT
TCGCGCAGGCCTACATGACGGACGTGGCCCGGCTGCTGGCCAGCACCGGCGCGCCGCTGCTCACCAACGTGTACCCCTAC
TTCGCCTACAAGGACAACCCGCGGGACATCCAGCTGAACTACGCGACGTTCCGGCCGGGCACCACGGTGCGTGACCAGAA
CAACGGGCTGACCTACACGTGCCTGTTTGACGCCATGGTGGACGCCGTGGTGGCGGCGCTGGAGCGGGCCGGGGCGCCCG
GGGTGAGGGTGGTGGTGTCGGAGAGCGGGTGGCCGTCGGCGAGCGGGTTCGCGGCGACGGCTGACAACGCGAGGGCGTAC
AACCAAGGGCTGATCGACCACGTCGGCGGGGGCACGCCAAAGAGGCCCGGCTTGCTGGAGACGTACATCTTCGCCATGTT
CAACGAGAACTTCAAGACCGGGGAGCTCATCCAGAAGCACTTCGGGCTGTTCAACCCGGACAAGTCGCCGGCGTACCCCA
TCCGGTTCCAGTA-GTATGGCTGCG------TCGTGCATGTATGCGTGCGTACGTACGTACACACGTGCATCGTCAACCT
AAATAAGCTGCGTATAGTGCAGGAGTAAAGTGTAACGTGGATACAATATGGGTCTGTTTAGGACACATCTA---GATGTG
ACATAGTTATGTCACATGTGACATAGTTATGTCACATCTGAGCTGATGTCCATTCTGTTTGTGGTTTATTTTT--CTTTA
TCCTATTTTTTTTCT--TATTGTTGCATTGTATATTTATG-GGAGTTTATATATCGTCTGTCATCCTAGTTCAAAAT---
-----------------------------ATATATATATATCCTCTGTCATGAATAAAGAGAAGGAAATTGAGGCAGTTA
TGAACTTTTTGTGATCCATGCATGGTTTATGTGCAGCGATTCCGC---------------CGTCTCCCACCGAAGGAACA
TCACTGAAAAGCGTGGAATAGATCCAAGAAGACGTGGTTGAAC---ATAGTTGAAATATGTTATATGTACTATAAAAGCA
AAGGCAAAAAAGAACTGCAATTGTGTGTTACTATTTTGCGAGTTAAATTTTTTTCATCCGTCTGTAAATTAGCGATTCTG
TAATTGTAACAT--------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------
>chr3D_1
TCACAATGCACTCCATAAAT-CGTTAGCGACACGTATTAATATAAGCAATAAAAAAGGTTAAACGTGATTGAGGGAATGA
GGGTGACCGGCCGGGCCAAGGCGTGC----ACGCAGCGCCAAGCTGCTGCATGCACACACAGATGCATGTGTGGAATGAT
CAACGACTAGGTACAC------AAGAAAAAGACACGTACGAGTACGACCAATCATGTGAGCAGGCGATCGGGTCTTGTAA
GATTCA----------------------------------------------GCTAGCTCATCACTGTCAACTTAAATTC
GATCTCATCCGCCATTGCAACATTGTCAACGGAGTAT--------TGTGCATGCATGAGCATGAGCTTACTATACTCACA
TGCATAGGCGGCCAGACT--------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------TGGTCCACGAAAGATTTTTCAAGAACTAAATAATGGACATTGATGTATGTACGTACCCAA
CTAGTTGTCGACGAAAAGTCCAACAAGTTTCCAATTTTGTGTAATAAAACTATAAGTGAAAATCTGGCACGATAGCAGCC
TCTATCATCTACTCATCGTTATGGATCATGGAATACTAAGGCTAGGATGAC--------------ACCTAATTAACTTGA
AAGATGGGGTGCACCTATCATCGAC------------------GATGAGATGGTGGAATAAGGAACCGTCTAATAATGCA
AACATATCACATGCATGC-------------ATCTCTCCATG-----------TATAAATAATCCTAG------CTAATG
---------------GCAGCAGGGAGAGCAAAGTATCAAGTCATCAACCAGAGAATTCTGTGACCTG-------------
--C--------------TTGATCCCGCAGCTAGCCATGACGATCGGCGTCTGCTACGGCGTGGTGGCCAACAACCTCCCG
CCGGCTAACGAGGTGGTGCAGCTCTACAGGTCCAAGGGCCTCACCGGCATGCGCATCTACTTCGCCGACGCCAAGGCCCT
CTCCGCGCTCCGCGGCTCAGGCATCGCCCTCATCCTCGACGTCGGCGGCACCGACGTGCTGGCCAGCCTCGCCGCCAACG
CCTCCAACGCGGCGAACTGGGTCCGGGACAACGTGCGGCCCTACTACCCGGCCGTGAACATCAAGTACATCGCCGCCGGC
AACGAGGTCCTGGGCGGCGACACGCAGAACATCGTCCCGGCCATGCGGAACCTCAACGCGGCCCTCAATGGCGCCGGCC-
-----TCGGCGCCATCAAGGTGTCCACCTCGATCCGGTTCGACGCGGTGACCAACACCTTCCCGCCGTCCAACGGCGTGT
TCGCGCAGGCCTACATGACGGACGTGGCCCGGCTCCTGGCCAGCACCGGCGCGCCGCTGCTCGCCAACGTGTACCCCTAC
TTCGCCTACAAGGACAACCCGCGGGACATCCAGCTGAACTACGCGACGTTCCGGCCGGGCACCACGGTGCGGGACCAGAA
CAACGGGCTGACCTACACGTGCCTGTTCGACGCCATGGTGGACGCCCTGGTGGCAGCGCTGGAGCGGGCCGGCGCGCCGG
GGGTGAGGGTGGTGGTGTCGGAGAGCGGGTGGCCGTCGGCGAGCGGGTTCGCGGCGACGGCGGACAACGCGAGGGCGTAC
AACCAGGGGCTGATCGACCACGTCGGCGGGGGCACGCCCAAGAGGCCCGGCTTGCTGGAGACGTACATCTTCGCCATGTT
CAACGAGAACTTCAAGACCGGGGAGCTGACCGAGAAGCACTTCGGGCTGTTCAACCCGGACAAGTCGCCGGCGTACCCCA
TCCAGTTCCATTA-GTCTGGCTGCG------TCGTCCATACATGCGCCGGCCCGTACGTACACACGTGCACTGTCAACCT
AAATAAGCTGCGTATAGTGCAGGAGTGAAGTGTAACGTGGGTACAATATACGTACACGTCGACATATTGTCAGCCTAAAT
AAGCTGCA------------------------------------------------------------------------
-------------CG--TATTGCAGCAGTGAAGTGTAACG-AGAGTGCATGTCAGAACATCGATTCATGCAAGAGTAGTG
CG-----ACCATTCCAGGTGGTGTTATATATCG----------TCTGTCATGAATAAAGAGAAGGAAATTGAGGCAGTTA
TGAATTTTTTGTGATCCATGCATGCTTTATGTGCAGGGATTCCGTGAGTCCACGGAAACACGTCTCCCACTGAAGGAACA
TCACTGAAAAGCGTGGAATAGATCCAAGAAGATGTGGTTCAAAAATATAGTTGAAATATGTTATATGTACTATAAAAGCA
AAGGCAAAAAAGAACTGCAATTGTGTGTTACTATTTTGTGTGTTAAATTGTTTTCATCCGGCTGTAAATTAGCGATTCTG
TAATTGTAACATGGTAGTTTTAACATTTTTTGTTATCTCATGCAGCGAAACCCCTACGGATGGACAGTGGTGAATTGTTG
CTGACCAAGGCCTTCCTGCATAGATGCAATCCTCTGTATGGAGTTTTTTTTGCGGCAAATCCTCTGTATGGAGTTA----
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>chr3A_617
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--------------------TAGTCCACGACGA--TTTTCAAAAACTAAATAATGGACATTGATGTATGTACGTACCCAA
CTAGTTGTCGACGAAAAGTCCAACAAGTTTCCAATTTTGTATA-AAACTATATAATTGAAAATTCGGCACGGTAGCAGCC
TCTGTCATCGACTTGTCGTTACGGATCATGGAATACTAAGGCTAGGATGACCAGGCTGAGGTGACACCTAATTAGCTAGG
AAGATGGGGAGCCCCTATCAATCTATCATGGACGATGAGATGAGATGAGATGGTGGAATAAGGAACCGTCTAATGATGCA
AGCATATCACATGCACGC-------------ATCTCTCATCTCTCCCATGTACTATAAGTAATCCTAG------CTAATG
GCGTTTCTTATCGCAGCAGCAGGGAGAGCAAAGCATCG--------ACCAGAAATTTTAGCCAGCAGAGACCCAGCTGAA
ACC--------------TTGATCCCGTAGCTAGCCATGACGATCGGCGTCTGCTACGGCGTGGTCGCCAACAACCTCCCG
CCGGCCAACGAGGTGGTGCAGCTCTACAGGTCCAAGGGCCTCACCGGCATGCGCATCTACTTCGCCGACGCCAAGGCCCT
CTCCGCGCTCCGCGGCTCCGGCATCGGCCTCATCCTCGACGTCGGCGGCACCGACGTGCTGGCCAGCCTCGCCGCCAACG
CCTCCAACGCCGCGAACTGGGTCCGGGATAACGTCAGGCCCTACTATCCGGCGGTGAACATCAAGTACATCGCCGCCGGC
AACGAGGTCCTGGGCGGCGACACGCAGAACATCGTCCCGGCCATACGGAACCTCAACGCGGCCCTCGCCGGCGCCGGCC-
-----TCGGCGCCATCAAGGTGTCCACCTCGATCCGGTTCGACGCGGTGACCAACACCTTCCCGCCCTCCAACGGCGTGT
TCGCGCAGGCCTACATGACGGACGTGGCCCGGCTCCTGGCGAGCACCGGCGCGCCGCTGCTGGCCAACGTGTACCCCTAC
TTCGCCTACAAGGACAACCCGCGGGACATCCAGCTGAACTACGCGACGTTCCGGCCGGGCACCACGGTGCGCGACCAGAA
CAACGGGCTGACCTACACGTGCCTGTTCGACGCCATGGTGGACGCCCTGGTGGCGGCGCTGGAGCGGGCCGGCGCGCCGG
GGGTGAGGGTGGTGGTTTCGGAGAGCGGGTGGCCGTCGGCGAGCGGGTTCGCGGCGACGGCGGACAACGCGAGGGCGTAC
AACCAGGGGCTGATCGACCACGTCGGCGGGGGCACGCCCAAGAGGCCCGGCGCGCTGGAGACGTACATCTTCGCCATGTT
CAACGAGAACTTCAAGACCGGGCAGCTCACCGAGAAGCACTTCGGGCTGTTCAACCCGGACAAGTCGCCGGCGTACCCTA
TCCAGTTCCGTTA-GTCTGGCTGCG------TCGTCCATACATGCG----CCCGTATGTACACACGTGCACTGTCAACCT
AAATAAGCTGCGTATAGTGCAGGAGTGAAGTGTAACGTGGATACAATATACGTACACGTCGACATATTGTCAGCCTAAAT
AAGCTGCA------------------------------------------------------------------------
-------------CGTATATTGCAGCAGTGAAGTGTAACG-AGAATGCATGTCATAACATCGATTCATGCAAGAGTAGTG
CAATGCAACCATTCCAGGTGGTGTTATATATCG----------TCTGTCATGAATAAAGAGGAGGAAATTGAGGCAGTTA
TGAACTTTTTGTGATCCATGCATGCTTTATGTGCAGCGACTCCGCGACAC----------CGTCTGCCACTGAAAGGACA
TCACTGAAAAGCGTGGAATAGATCCAAGAAAATGTGGTTGAA--------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------
>chr3D_850
AACAT---------------------------------------------------------------------------
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------TCACATGCATCCATGCATCTTTCTGATCTCTCCCTG-----------TATATATAAGTAATCGCAGTTCTTATC
---------------GCAGCAGGGAGAGCAAAGT-------CATCAACCAGAGAATTCTGTGACCTG-------------
--C--------------TTGGTCTCGTAGCTA-CCATGACCATCGGCGTCTGCTACGGCGTGGTCGCTAACAACCTCCCG
CCGGCGAACGAGGTGGTGCAGCTCTACAGGTCCAAGGGCCTCACCGGCATGCGCATCTACTTCGCCGACGCCAAGGCTCT
CTCCGCGCTCCGGGGCTCCGGCATCGCCCTCATCCTCGACATCGGCGGCAACGACGTGCTGGCCAGCCTCGCTGCCAGCG
CCTCCAACGCGGCGAACTGGGTCCGGGACAACGTGCGGCCCTACTACCCGGCCGTGAACATCAAGTACATCGCCGCCGGC
AACGAGGTCCTGGGCGGCGACACGCAGAACATCGTCCCGGCCATGCGGAACCTCAACTCGGCCCTCAACGGCGCCGGCC-
-----TCGGCGCCATCAAGGTGTCCACCTCGATCCGGTTCGACGCGGTGACCAACACCTTCCCGCCCTCCAACGGCGTGT
TCGCGCAGGCCTACATGACGGACGTGGCCCGGCTCCTGGCCAGCACCGCCGCGCCGCTGCTGGCCAACGTGTACCCCTAC
TTCGCCTACAAGGACAACCCGCGGGACATCCAGCTCAACTACGCGACGTTCCGGCCGGGCACCACCGTGCGTAACCAGAA
CAACGGGCTGACCTACACGTGCCTGTTCGACGCCATGGTGGACGCCGTGGTCGCGGCGCTGGAGCGGGCCGGAGCGCCGG
GGGTGAGGGTGGTCGTGTCGGAGAGCGGGTGGCCGTCGGCCAGCGGGTTCGCGGCGACGGCAGACAACGCGAGGGCGTAC
AACCAGGGGCTGATCGACCACGTCGGCGGGGGCACCCCCAAGAGGCCCGGCTTGCTGGAGACGTACATCTTCGCCATGTT
CAACGAGAACTTCAAGACCGGTGAGCTCACCGAGAAGCACTTCGGGCTGTTCAACCCGGACAAGTCGCCGGCGTACCCCA
TCCGCTTCTAGTACGTCTGGCTGCATATCGATCGTCCATGCA--------TACGTACGTACACACATGAATCGTCAACCT
AAATAAGCTG----------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------
>chr3B_1007
--------------------------------------------------------------------------------
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-----------------------------------------ATCGGCGTGTGCTACGGCGTGATCGCCAACAACCTCCCG
CCGGCGAACGAGGTGGTGCAGCTCTACAGGTCCAAAGGCATCACCGGCATGCGCATCTACTTCGCCGACGCCAAGGCCCT
CTCCGCGCTCCGCAACTCCGGCATCAGCCTCATCCTCGACGTCGGC---AACGACCAACTCGCCAACCTCGCCGCCAGCA
CCTCCAACGCGGCGTCATGGGTGCAGAAGAACGTCCGCCCATACTACCCGGCTGTAAACATCAAGTACATCGCGGCGGGC
AACGAGGTCCAGGGCGGCGCCACGCAGAGCATCGTGCCGGCCATGCGCAACCTCAACGCGGCCCTCTCCGCTGCTGGGC-
-----TCGGCGCCATCAAGGTGTCCACCTCCATCCGGTTTGACGAGGTGGCCAAGTCCTTCCCGCCCTCCGACGGCGTGT
TCGCGAATGCCTACATGACGGACGTGGCCCGGCTCCTGGCGAGCACCGGCGCGCCGCTGCTGGCCAACGTGTATCCCTAC
TTCGCCTACAAGCGCGACCCGCAGAACATCAAGCTAAACTACGCGACGTTCCGGCCGGGACCCTCGGTTCGGGACGACAA
GAGCGGGCTGACCTACACATGCCTGTTCGACGCGATGGTGGACGCCGTGGTCGCCGCGCTGGAGAAGGCCGGGGCGCCGG
CGGTGAGGGTGGTGGTGTCCGAGAGCGGGTGGCCGTCGGCAAGCGGGTTCGCGGCGACGGCCGACAACGCTAGGGCGTAC
AACCAGGGGCTGATAGACCACGTCGGCGGGGGCACACCGAAGAGGCGCGGCGCGCTGGAGACGTACATCTTCGCCATGTT
CAACGAGAACTTCAAGAGAGGGGACCTCGTGGAGAAGCACTTCGGGCTGTTCAAGCCGGACAAGTCGCCGGCGTACCCCA
TCCAGTTCAAGT--------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------
>chr3B_1007
--------------------------------------------------------------------------------
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-----------------------------------------ATCGGCGTGTGCTACGGCGTGATCGGCAACAACCTTCCC
TCCCGGAGCGACGTGGTGCAGCTCTACAGGTCCAAGGGCATCAACGGCATGCGCATCTACTTCGCCGACGGGCAGGCCCT
CTCCGCGCTCCGCAACTCCGGCATCGGCCTCATCCTCGACATCGGT---AACGACCAGCTCTCCAACATTGCCGCCAGCA
CCTCCAACGCGGCGTCCTGGGTCCAGAACAACGTGCGCCCCTACTACCCGGCCGTGAACATCAAGTACATCGCCGCCGGC
AACGAGGTGCAGGGCGGCGACACGCAGAGCATCGTCCCGGCCATGCGGAACCTCTACGCGGCCCTCTCCGCCGCCGGTC-
-----TCGGCGCCATCAAGGTGTCGACCTCGATCCGGTTCGATGCGGTGGCCAACTCCTTCCCGCCCTCCGCCGGCGTGT
TCGCGCAGTCGTACATGACGGACGTGGCCCGGCTCCTGGAGAGCACCGGCGCGCCGCTGCTGGCCAACGTGTACCCCTAC
TTCGCGTACCGCGACAACCCGCGGGACATCAGCCTGAACTACGCGACGTTCCAGCCGGGCACCAGCGTGCGTGACCAGAA
CAACGGGCTGACCTACACGAGCCTGTTCGACGCGATGGTGCACGCCGTGTACGCGGCGCTGGAGAAGGCCGGCGCGCCGG
GCGTGAAGGTGGTGATTTCCGAGAGCGGGTGGCCGTCGGCGGGCGGGTTCGCGGCGTCGGCGGACAGCTCACGGACGTAC
AACCAGGGGCTGATCAACCACGTCGGCGGGGGCACGCCCAAGAAGCGGGAGGCGCTGGAGACGTACATCTTCGCCATGTT
CAACGAGAACCAGAAGACCGGGGATCCGACGGAGAGGAGCTTCGGGCTCTTCAACCCGGACAAGTCGCCGGCCTACAACA
TCCAGTTCAAGTAGCTAT--------------------------------------------------------------
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>chr3D_1007
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-----------------------------------------ATCGGCGTGTGCTACGGCGTGATCGCCAACAACCTCCCG
CCGGCGAACGAGGTGGTGCAGCTCTACAGGTCCAAAGGCATCACCGGCATGCGCATCTACTTCGCCGACGCCAATGCCCT
CTCGGCGCTCCGCAACTCCGGCATCAGCCTCATCCTCGACGTCGGC---AACGACCAGCTCGCCAACCTCGCCGCGAGCA
CCTCCAACGCGGCGTCCTGGGTCCAGAAAAACGTCCGGCCATACTACCCGGCCGTGAACATCAAGTACATCGCGGCCGGC
AACGAGGTCCAGGGCGGCGCCACGCAGAGCATCGTGCCGGCCATGCGCAACCTCAACGCGGCCCTCTCCGCGGCTGGGC-
-----TCGGCGCCATCAAGGTGTCCACCTCCATCCGGTTCGACGAGGTGGACAAGTCCTTTCCGCCCTCCGACGGCGTGT
TCAAGAATGCCTACATGACGGACGTGGCCCGGCTCCTGGCGAGCACGGGCGCGCCGCTGCTGGCCAACGTGTACCCCTAC
TTCGCCTACAAGCGTGACCCGCAGAACATCAAGCTCAACTACGCGACGTTCCGGCCGGGACCCACGGTGCGGGACGACAA
GAACGGGCTGACCTACACGTGCCTGTTCGACGCGATGGTGGACGCCGTGGTCGCCGCCCTGGAGAAGGCCGGGGCGCCGG
CGGTGAGGGTGGTGGTGTCCGAGAGCGGGTGGCCTTCGGCGAGCGGGTTCGCGGCGACGGCCGACAACGCGAGGGCGTAC
AACCAGGGGCTGATCGACCACGTCGGCGGGGGCACACCGAAGAGGCGCGGCGCACTGGAGACGTACATCTTCGCCATGTT
AAACGAGAACTTCAAGAGAGGGGAGCTGGTGGAGAAGCACTTCGGGCTGTTCAACCCGGACAAGTCGCCGGCGTACCCCA
TCCGGTTCAAGT--------------------------------------------------------------------
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>chr3A_1007
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-----------------------------------------ATCGGCGTGTGCTACGGCGTGATCGCCAACAACCTCCCG
CCGGCGAACGACGTGGTGCAGCTCTACAGGTCCAAGGGCATCACCGGCATGCGCATCTACTTCGCCGACGCCAAGGCCCT
CTCCGCGCTCCGTAACTCCGGCATCAGCCTCATCCTCGACGTCGGA---AACGACCAGCTCGCCAGCCTCGCCGCCAGCA
CCTCCAACGCGGCGTCCTGGGTGCAGAAAAACGTCCGGCCATACTACCCGGCCGTGAACATCAAGTACATCGCCGCCGGT
AACGAGGTCCAGGGAGGCGCCACCCAGAGCATCGTGCCGGCCATGCGGAACCTCAACGCGGCTCTCTCCGCCGCTGGGC-
-----TCGGCGCCATCAAGGTGTCCACCTCCATCCGGTTCGACGAGGTGGCCAAGTCCTTCCCGTCCTCCGAGGGCGTGT
TCGCGAATGCCTACATGACGGACGTGGCCCGGCTCCTGGCGAGCACCGGCGCGCCGCTGCTGGCCAACGTGTACCCCTAC
TTCGCCTACAAGGACAACCCGCGGGACATCCAGCTGAACTACGCCACGTTCCGGCCGGGACCCACGGTGCGGGACGACAA
GAACGGGCTGACCTACACGTGCCTGTTCGACGCGATGGTGGACGCCGTGGTCGCCGCCCTGGAGAAGGCCGGGGCGCCGG
GGGTAAGGGTGGTGGTGTCGGAGAGCGGGTGGCCGTCGGCGAGCGGGTTCGCTGCGACGGCGGACAACGCGAGAGCCTAC
AACCAGGGACTGATCGACCACGTCGGCGGGGGCACGCCCAAGAGGCGTGGCGCGCTGGAGACGTACATCTTCGGCATGTT
CAACGAAAACTTCAAGAGAGGGGAGCTCGTGGAGAAGCACTTCGGGCTGTTCAACCCGGACAAGTCGCCGGCGTACCCCA
TCCAGTTCAAGT--------------------------------------------------------------------
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>SNPs
----------------------------------------------S---------------------------------
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------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS------------------------------------------------------------
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-------S------------------------------------------------------------------------
---------S----------------------------------------------------------------------
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---SSSSSSSSSSSSSS-----S---------------------------------------------------------
--------------------------------------------------------------------------S-----
------------------------------------------------------------------------------S-
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-------------------------------------------------------------------------------S
SSSSS-----------S---------------------------------------------------------------
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-----------------------S--------------------------------------------------------
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-----------------------------------------------------S---S----------------------
------------------------------------S----------------------------------SSS------
------------------------------------------------------------S----S-------SS-----
----S--S---------------------------S-S-SS------------------S------S-------------
--------------------------------S-----------------------------------------------
--------------------------------------------------------------------------------
-----S-------------------------------------------------------------S------------
-----S--------------------------------------------------------------------------
-----------------------------------------------S-------S----------S-----S---S---
------------------S------------S-S-----------S-S----SS-S---S----------------SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_433
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-------------AGGCTTAGAGGGTGCTTGGA-----------------------------------------------
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>reverse_2277
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------------------------------------ATGGATACAATATGGGTCTGTGT---------------------
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