>input_sequence_64960
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-------------------------------------------------ATGGATCCATTCCCCGTCTTCGGCCGCGAGA
GGTCCGCGTCGTCGCCGGACTACCCGCCCCGCCCGGGGTCGCCGGAGTACGTGCCGTCGTGCCATCAGTCGCGAGCGGCG
TCGGTTGACCTCGCGCCTCCGACCTCCCCGTGGCGCGCGGAGTCCCCGGAGTACGTCCCGTCGACCCCCTGGTGGCGCGG
GCGCGTGACGGTCACGGCCAGCCACCGCACCCGGTCGTCGGCAGGTGGGCGGCAGAGCTCGTCCTCGTCGTCGCCGGATT
ACTTCCCGTCCACCTCGCCGCCCCGCGTGGCGTCTCCGGAGTATTCGCCGTCGGCGGACCACTGGAGGCGCGCGGAGTCA
CCAGAGTACGCGCCGTCGACCTCCCCGTGGCGCGCGGAGTCCCCGGAGTACGTCCCGTCGACTCCCTGGTGGCGCGGGCG
CGCGGCGGCCAGCCAGCACACCCGGTTGTCGGCGCCTGGACGGCAGAGCTCGTCGTCGCCGGATTACTACACTCCTACCT
CGCCGTGCGGCGTGGCGT------------------------------------------CGCCGGAGTACACGCCGTTG
GCTGACCACTGGAGGCGCGCGCTGGCGGTGTTCCCCGCCGACGACACCCCGTCGACACCTCTCGAGCAGCGACCGTCATC
GTCGGACTACGCCGCGTCGACATCTCCTCTGCGGCGCTCGCCGTCACCGGATTACTCCCCGTCGGCCTCCTCGCGGCGCG
CGGCCTCGCCGGAGTACGTGCCGACTGCTCCGTGGCGGCGCGCGGCGTCCCCGCAGCACACGCCCCCGACGCGTCCCCAG
CGCGCGGCGACA---------CGCGCCCCCTGCGCGTCTCCTCCGTCGCCGCCGGTGCCAGCTGACGCTGGGTCGCGCAC
GTCCTCGCGGTCCCGGTGCCATCGTCCGTACCAGAGGAGCGGCGTCGGGGCGTGCACGTGCCCCGCGCGCCGGAGCTGA-
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>chr2A_1_TraesCS2A01G434500
AAGATGTAAAGTTGTGAAGGATAGCACGTAGGTGAAAAACTAATGTGATAAAGTAATTAAGAAGAGAGAACATTTTAATG
ACTCAAAGCAGAAACAATGGTACCTACATAAGGAAATGAAGTTTCTTAGCTCGAGCTCATACGAGGTCGT-TGAACAGTA
AAAATGAAAAA---AATCAAACAATTCTGAATAAAATTGTGACAAACATTGACAAAAGTTTTTTACGCTTGCAAGTTTCA
TTGTGTCGCTTTCCGCAAAAAAAAAGTTTCATTGTGTCGCCATGAACTCTACAAATGTCCCAAGCTCAAAGAATTTTATG
ATTTTTTTTATTTTACTGTTCAC--CGAGCTCATTCAAGCGTGGGACTAGAAGAGTACTTCCGCCTACACAAACACCTAT
GCATGAAATAGTTTAATTGCTAAACAATTTAAATGAAGGAAGCTTAGTTACAAAAGGCTAAGCACGTATATATACATTAA
AAAAATACAAGTTGGTACTAAGCCCTTTCGTGTATTTAACACTTAGCATCTTATTTAAGC--GTACCGCGTAGAAAAA-T
GACGGGGTGTTACTTCGTGTCACACGGTGGCACTTACCATTTGATAAAAAGAAAGTGCCCTCATGATTTATACAGCGAGC
CTGGTCTTTGGACCCGTACGGCAGCCTGGCCCACACTCAGAGGAACGGGTGAGTGGACCCGTACGGCAGCCTGGCCCACG
CTCAGAGGAACGGGTGAGTGGACGGTATGCCAGTCTGGCCCACTCGCAGATGAACCGATCTGAGCACTAGCTACAGCCGA
AGCCAATTCGAGCAAGCTTTTAAACTCGAGGCCAGCGCAGAGCCGCGGACTTGCTATCCACGCGACATCGCCCCTAGAAA
TTCTCGCGAGTGGCCTCCGCCGTCTCGGATTCTTGACCGCCACGCTCTCACGCAACCCTCTCTGGATCCGGCGCCCGCCG
GCGACTTCTGCGGCGTCTCTTGCTCCCCAGACTACCCACCCCTTCCCCGATGGATCCATTCCCCGTCTTCGGCCGCGAGA
GGTCCGCGTCGTCGCCGGACTACCCGCCCCGCCCGGGGTCGCCGGAGTACGTGCCGTCGTGCCATCAGTCGCGAGCGGCG
TCGGTTGACCTCGCGCCTCCGACCTCCCCGTGGCGCGCGGAGTCCCCGGAGTACGTCCCGTCGACCCCCTGGTGGCGCGG
GCGCGTGACGGTCACGGCCAGCCACCGCACCCGGTCGTCGGCAGGTGGGCGGCAGAGCTCGTCCTCGTCGTCGCCGGATT
ACTTCCCGTCCACCTCGCCGCCCCGCGTGGCGTCTCCGGAGTATTCGCCGTCGGCGGACCACTGGAGGCGCGCGGAGTCA
CCAGAGTACGCGCCGTCGACCTCCCCGTGGCGCGCGGAGTCCCCGGAGTACGTCCCGTCGACTCCCTGGTGGCGCGGGCG
CGCGGCGGCCAGCCAGCACACCCGGTTGTCGGCGCCTGGACGGCAGAGCTCGTCGTCGCCGGATTACTACACTCCTACCT
CGCCGTGCGGCGTGGCGT------------------------------------------CGCCGGAGTACACGCCGTTG
GCTGACCACTGGAGGCGCGCGCTGGCGGTGTTCCCCGCCGACGACACCCCGTCGACACCTCTCGAGCAGCGACCGTCATC
GTCGGACTACGCCGCGTCGACATCTCCTCTGCGGCGCTCGCCGTCACCGGATTACTCCCCGTCGGCCTCCTCGCGGCGCG
CGGCCTCGCCGGAGTACGTGCCGACTGCTCCGTGGCGGCGCGCGGCGTCCCCGCAGCACACGCCCCCGACGCGTCCCCAG
CGCGCGGCGACA---------CGCGCCCCCTGCGCGTCTCCTCCGTCGCCGCCGGTGCCAGCTGACGCTGGGTCGCGCAC
GTCCTCGCGGTCCCGGTGCCATCGTCCGTACCAGAGGAGCGGCGTCGGGGCGTGCACGTGCCCCGCGCGCCGGAGCTGAG
CAATCCCGTGGCGGCATGGGCGCCTGATTTTGCACGGATGTTAGTCGGATTCATAGGCACCTTGCAGATTG---TAGTAG
GAGATATTGGATTCCTCATGCAAACTTTGCTGCTAGTAGTTGCCTGACTTGCAATACGACTCACTCCTTTCCTGTTTGCC
GTGCTTCACATCAATAACGAGCATGTCAATGCCACATGCATGACCCTTGCTCTTTCATGCATTGGTGAGATCAAAATATG
ACCGAATTTAATGTGGACACAAGCTATATTTATCTACTTGGGCC----------TTCCAAATGGCAAATTTCTGATTGGT
AAGATCAAAATTTGACAGAATTCAATCTGTCGGTGGTAGGTTGTATTTAGGGATCTTATCTTTTTTTTTTTGCGG-----
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----------------------------------CAATTTAGGGACCTTATCAAAATTCAG-------------------
----------ACTACTACAAGTTCAGAGTACTTACCGAATAGAAAGCTTAGTTTTGAGTTGTTTGGCTCCACCTGGTAAG
CATGTTTTTTTTTTTTTGCGGACACACCTGGTAAGCATGTTGACGTCGGTCAACACTAGAGATTCAGATGTATTGTT---
-------GAATACTTGTAGTTCATTTCTTGGTTAATTTCATGTATGTGAATCTCATGAACACCTCAAAAACACCCATAAT
C--AACAACCATCGTATTTATATCC-----------GATATCAATATTATTAGTTCGATATTTCCTCGATACGTGGCAAT
AAAGTAGCGATGAATATATGCAATAAAATTAATGTGGATGTGTTTTCAATACTCCTTTGATCCTTCCTTGATACGACCTA
GCTCAGTCAAATTCGATGTTGCGGTTTGGCTGTCAGTTACTGGCTTTTGATATAAGAGAATGAACCACACAAACTAAATA
CTCCCTCTGTAAACTAATATAAGAGCGTTTAGATCACTAAAGTAGTAATCTAAACGCTCTTATATTAGTTTACGGAGGGA
GTACATACTAAACAGTTTGATGCTTAATTGATAATATATTCTCAAAACAGTAAAACATATCCT
>chr2D_2
-AGATGTATAGTTGTGAAGGATAGCACATACGTGAAAAATTGTTGTGATAAAGTAACTAAGAAGAGAGAGCACTTTAATG
ACTCAAAAAAGAAACAATGCTATCTACACAAGGACATGAAGTTTCTTAGCTCGAGCTCATATGAGGTCAGGTGAACAGTA
AAAATGAAAAAGAAAATCAAACAATTCTAAAAAAAATA-TGACAAACATTGACAAAAGTTTTTTA-GCTTGC--------
-----------------------AAGTTTCATTGTGTTGCCATTAATTCTACAAATGTCCCAAGCTCAAAGAATTTTGTG
ATTTTTTTTATGTTACTGTTCACCCCAAGCTCATTCAAGTTTGGGACTAGAGGGGTACCTACGCCTACACAAACACTTAT
GCATGAAATAGTTTAGCTGCTAAACAATTTAAACAAAGAAAGCTTAGTTACAAAAGGCTAAGCAC--ATATGTACATTAA
AAGGTTATAAGTTAGTACTAAGCCTTTTCGTGTATTTAGCATTTAGCATCTCATCTAACTATGTACCGCGTAAAAAAAAT
GTCAGAACGGTCACACGT--------GTGGCACTTATCATTTGGCAAAAAAAAAGTGCCCTCGTGATTTATACAGGCAGC
CTGGTCTTTGGACCCGTACGC---------------------------------------------CAGCCTGGCCCACG
CTCAGAGGAACGGGTGAGTGGACCGTATGCCAGTCTGGCCCACTCGCAGATGAACCGATCTGAGCACTAGCTACAGCCGA
AGCCAATTCAAGCAAGCTTTTAAACTCGAGGCCAGCGCAGAGCCGCGGACTTGCTATCCACGCGACATCGCCCCTAGAAA
TTCTCGCGAGTGGCCTCCGCCGTCTCGGATTCTTGACCGCCACGCTCACACGGAACCCTCTCTGGATCCGGCGCCCGCCG
GCGACTTCCGCGGCGTCTCT----CCCTAGACTACTGCCCCCTTCCCCGATGGATCCATTCCCCGTCTTTGGCCGCGAGA
GATCCCCGTCGTCGCCGGACTACCCGCCCCGCCCGGGGTCGCCGGAGTACGTGCCGTCATGCCATCAGTGGCGTGCGGGG
TCGCTTGACCTCGCGCCGTTGACTTCCCCGTGGCGCGCCGAGTCCCCGGAGTACGTCCCGTCGACTCCCTGGTGGCGCGG
GCGCGTGACGGTCACGGGCAGACACCACGCCAGGTCATCGGCGGGTGGGCGGCAGAGCTCGTCCTCGTCGTCGCCGGATT
ACTTCCCGTCCACCTCGCCGTGCCGCGTGGCATCTCCGGAGTATATGCCGTCGGCTCACCACTGGAGGCGCGCGGCGTCA
CCAGAGTACGCGCCGTCGACCTCCCCGTGGCGCGCTGAGTCCCCGGAGTACGTCCCGTCGACTCCCTGGTGGCGCGGGCG
CGCGGCGGGCAGCCAGCGCACCCGGTTGTCGGCGCCTGGGCGGCAGAGCTCGTCGTCGCCGGATTACTCCCCTTCTACCT
CGCCGTGCCGCGTGGCGT------------------------------------------CGCCGGAGCATATGCCGTTG
GCTGACCACTGGAGGCGCGCGCTGGCGGTGTTCCCCGCCGACGACACCCCGTCGACACCTCTGGAGCAGCGACCTTCGTC
GTCGGACCCCGCCACATCGACA---CCTCTGCGGCGCTCGCCGTCACCGGATTACTCCCCGTCGGCCTCATCGTGGCGCG
CGGCCTCACCGGAGTACGTGCCGACTGCTCCGTGGAGGCGCGCGGCGTCCCCGCAGCACACGCCCCCGACGCGTCCCCAG
AGGGCGGCGACATATCCCGACCGCGTCCCCTGCGCGTCTCCTCCGTCGCCGC---------CTGACGCTGGGTCGCGCAC
GTCGTCGCGGTCCCGCTGCTATCATCCGTACCAGAGGAGCGGCGTCGGGACGTGCACGTGCTCCGCGCGCCGGAGCTGAA
CAC-CCCGTGGCGGCATCGGCGCCTGATTTTGCACGGATGTTA-TCGGATTCATAGGCACATAGCAGATTGGAATAGTAT
GAGATATTGGATTCCTCATGCAAACTTTGCTGTTAGTAGTTGCCTAACTTGCGATACTACTCACTTATTTCCTGTTTGCC
GTGCTTCACATCAATAACGAGCATATCAATGCCACATGCATGACCCTTGCTCTTTCATGCATTGGTA---TCAAATTTTG
ACAGAATTTAATGTGGACACATACTATATTTATGTATTCCC---------AGGTTTACAAATGGCAAATTTCTGACTTTT
AAACTGCAAGGAG-------------GGGAGTATCCAATTTGGATGCGGTGCTTGATGGCATTGTTTGCCTTCTTATCGG
TTCTTGATCTTAGCAAAATGTTGCCCATGTATGCAGGTGGTTAGTGGGGGAGCCAGAAAAATTGTATCGACAGGGCAT--
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---------------------------------------------------------------ATAGTGTTATTAAGCAA
GGTTAAGGAGGGCTAAACCATAAAATACGCTTTTGGCAGCTAAAAAATAATCGTCAATCTAACGAAGGAAACTGAATGTT
GGCCCGGGCCCGTGCTGGCTACCCCTGCCTCTGCCAATGCGGGTGGTAGGTTGTACTCCCTCTGTAAACTAATATAAGAG
CGTCTAGATCACTACTACGAGTTTAGACTACTTATCGAATAGAAAGCTTAGTTTTGAGTTGTTTGGCTCCACCTGGAAAG
CATGG-----------------------------------TGATGTCGGTCAACCTAACTAGAAGAATCGGATGTACTCC
GTTGGCAGAATACTTGTAGTTTATTGCTTGGTTAAATTCATGTGTATGGATCTCATGAACACCTCAGAAACATCGATAAT
CCCAACAACCGTCGTAATCTATCGGATATCATATCTGATATCAATATTATTGGTTCGATATGTCCTCGATACGTAGCAAT
GAAGTAGCGGTGAATATATGCAATAAAATTAATGTCGTTGCGTTTTCAATACTCCCTTGATACATCCTTGATACGACCTA
GCTCAGTCAAATTCGATGTTGCGGTTTGGCTGTTAGTTATTAGCTTTT--------------------------------
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>chr2B_2
-AGATGTAAAGTTGTAAAGGATAACACATAGGTGAAAAATTGTTGTGATAAAGTAACTAAGAAGAGAGAGCACTTTAATG
ACTC--AGAAGAAACAATGCTACCTATACAAAGACATGAAGTTTCTTAGCTCGAGCTCATATGAGGCCAGGTGAACAGTA
AAAATGAATAAGAAAATCAAACCATTCTAAAAAAAATTG----------TGACAAAAGTTTTTTACGCTTGC--------
-----------------------AAGTTTCATTGTGTTGCCATGAATTCTACAAATGTCCCAAGCTCTAAGAATTTTATG
ATTTTTTTAT------TGTTCACCCCGAGCTCATTCAAGGTTGGGACTAGAAGAGTAATCTCACCTTCACAAACACTTAT
GCATGAAATAATTTAGTTGCTAAACAATTTAAATAAAGAAAGCTTAGTTACAAAAGGCTAAGCGTGTGTATACATTA-AA
AGGGTTATAAGTTGGTACTAAGCCCTTTCGTGTATTTAGCATTTAGCACCTCAGCTAAGCATGTACCGCATAAAAAAA-T
GTCAAGACGGCCACACGT--------GCTGCACTTATCATTTAAT-AAAAATAAGTGCCCTCATGATTTATACAGGCAGC
CTGGTCTTTGGACCCGTAT---------------------------------------------GGCAGCCTGGCCCACG
CTCAGAGGAACGGGTGAGTGGACCGTATGCCAGTCTGGCCCACCCTCAGATGAACCGATCTGAGCACTAGCCACAGCCGA
AGCCAATTCAAGCAAGCTTTTAAACTCCAGGCCAGCGCAGAGCCGCGGACTTGCTATCCACGCGACATCGCCCCTAGAAA
TTCTCGCGAGTGGCCTCCGCCGTCTCGGATTCTTGACCACCACGCTCACACGGAACCCTCTCTGGATCCGGCGCCCGCCG
GCGACTTCTGCGGCGTCTCT----CCCTAGACTACTCACCCCTTCCCCGATGGATCCATTCCCCGTCTTCGGCCGCGAGA
GATCCCCGTCGTCGCCTGACTACCCGCCCCGCCTGGGGTCGCCGGAGTACGTGCCGTCGTGCCATCAGTGGCGAGCGGGG
TCGCTTGACCTCGCGCCGTCGACCTCCCCGTGGCGCGCGGAGTCCCCGGAGTACGTCCCGTCGACTCCCTGGTGGCGCGG
GCGCGTGACGGTCACGGGCAGCCACCACACCCGGTCGTCGGCAGGTGGGCGGCAGAGCTCGTCCTCGTCGTCGCCGGATT
ACTTCCCGTCCACCTCGCCGTGCTGCGTGGCGTCTCCGGAGTATAGGCCGTCGGCTGACCACTGGAGGCGTGCGGCGTCA
CCAGATTACGCGCCGTCGACCTCCCCGTGGCGCGCGGAGTCCCCGGAGTACGTCCCGTCGACTGCCTGGTGGCGCGGGCG
CGCGGCGACCAACCAGCACACCCGGTTGTCGGTACCTGGGCGGCAGAGCTCGTCGTCCCCGGATTACTCCCCTTCTACCT
CGCCGTGCCGCGTGGCGTCGCCGGGTTACTCCCCTTCTACGTCACTGTGCCGAGTGGCGTCGCCGGAGTATATGCCGTTG
ACTGACCACTGGAGGCGCGCGCTGGCGGTGTTCCCCGCCGACGACACCCCGTCGACACCTCAGGAGCAGCGACCTTCTTC
GTCGGACTACGCCGCGTCGACACCTCCTCTGCGGCGCTCGCCGTCACCGGATTACTCCCCCTCGGCCTCCTCGTGGCGCG
CGGCCTCGCCGGAGTACGTGCCGACTGCTCCGTGGAGGTGCGCGGCGTCCCCGCAGCACACGCCCCCGACGCGTCCCCAG
CGCGCGGCGACATATCCTGACCGCGTCCCCCGCCCGTCTCCTCCGTCGCCGCCGGTGCCAGCTGACACTGGGTCGCGCAC
GTCCTCGCGGTCCCGCTGCTATCATCCGTACCAGAGGGGCGGCGTCGAGCCGTGCACGTGCTCCGCGCGCCGGAGCTGAA
CA-TCCCGTGGCGGCATGGGCGCCTGATTTTGCACGGATGTTAGTCGGATTCATAGGTACCTTGCAGATTGTAACAG---
GAGATATTGGATTCCTCATGCAAACTATGCTGTTAGTAGTTGCCTAACTTGCAATACTAGTCACTTCTTTCCTGTTTGCC
GTGCTTCACATCAATAACGAGCATATCAATGCCACATGCATGACCCTTGCTCTTTCATGCATTGGTAAGATCAAATTTTG
ACAGAATTTAATGTGGACACAATCTATATTTATCTATTTCTAAAATAATAAGGTTTGCAAATGGCAAATTTCTGTTTTTT
AAGATGGACCTAACAAACTGAAAGGAGGGAGTATCCAATTTGGATGCGATGTTTGATGGCGTTCTTTGCCTGCTTATCGG
TTCTCGATCTTAGCAAAATGTCGCCCATGTATGCGGGTGGTTAGTGGGGGAGCCAGAAAAATTATACTCGCTTCATTTCA
TGATGTAGTGCATCAGCGCTTTTCGAGATTTAAATTTGACCATATATTTAACCAACGGGACCGACTGCGGCGGGAGCAAA
AATTATACCACTAAATTTGTATCGAAAATACGAAATCAGTGCTATAATTTCTGTTGCCGTCGCAGTCGGTCTCGTTGGTT
AAATTTAGATCTCAAAAAGTATAAATGCACTACATTGTGAAATGAAGGGAGTATCGGTGCGGCATAGTGTTATTAAGCAA
GGTTTGGGAGGGCTAAGTCGTTAAATACGCTTTTAGCAGGT----AATAATCGTCAATCTAACGAATGAAACTGAATGTT
GGCCGGGGGCCCTGCTGGCTACCCCTGCCTCTGCCAATGTAGGAATCTTATCAAAATTCAA-------------------
----------ACTACTACAAGTTCAAAGTACTTACCGAATAGAAAGCTTAGTTTTGAGTTGTTTGGCTCCACTTGGTATG
CATGTT--------------------------------------------------------------------------
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>SNPs
S--------------------------S-----------S-SS-------------S------------S--S-------
--------S----------S--------S-----S--------------------------S------SS----------
----------------------------S--S----------------------------------------SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS--------------S--------S---------------------------------
-----------S---------------------------SS-------------------S---------------S---
---------------S------------------S---S-----------------------------------------
--SSS--S------------------------------S--S---------S--S-----------------S-------
-S-S--SS-S-SSSS---SSSSSSSS----------S-------------S------------------------SS---
--------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------
-----------------------S--------------------------------------------------------
---------S----------------------------------------------------------------------
-----------------------------------------------S----S---------------------------
--------------------SSSS---S-------S--------------------------------------------
-S---S---------------------------------------------------------------S--------S-
---S-------------SS----------------------------------------------S--------------
-----------------S--------S-----------------------------------------------------
--------------------SS----------------------SS---------S-------------------S----
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---------------------------------------S----------------------------S-S--S------
--------S-------------------------------------------------------------S-S-------
--------------------------------------------------------------S-----------S--S--
----------------------S--------------------------------------------------S------
-----------------------------------S--------------------------------------------
-------------------------S------------------------------------------------------
---------------S---S---S-------------------------S-----------S-----------------S
--S----------------------------------------------------------------------------S
--------------------------------S------------S-----------S-------S--------------
------------------------S-----------------------------------------S--------S-S--
--S-------------------S-------------S--SSSSS------------S--------------------SS-
-----SS--S-SSS-S-SSSSSSSSSSS-SSSS-SSS-SS-S-SSSSS-S-SS-SS-SS-S--S---SSS---SS-----
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--------------------------------------S----S-S--------------S-------------------
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------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S----------SSS-SSSSSSS-SSS-S--SSSS---
---------------------S---S---------S-------S-S--S-----------------S-----S-S-----
----------S-----S-SSSSSSS--------------------------S---------S------------S-----
S--------S-------------------------S-S--S--------------S-----S-S----------------
---------------------------------S-----S-S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_579
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-------------------------------------------------------------------------------T
GACGGGGTGTTACTTCGTG-------------------------------------------------------------
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>reverse_2979
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------------------CGGACACACCTGGTAAGCAT------------------------------------------
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