>input_sequence_64940
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---------------------------------------------------ATGGCCCTCCCGTCGCCGGCCGGAATCGC
CAAGCCCAGGCTCCACCTTCTCTTCAACCACAGGCGCGCCAGCTCGTCCTCCGTCACCTGTGAGTGGATCTCTCGCTAGC
TCCGCCCGTGCGTGCAGTACGTCGAGT--------TCTTGCTCACTTTTGGTTTCCTCGCTTGCTTCCAGGCTGCAGCAA
CAACGGGCGGTCGTCGTCGTCTGAGCCCGAGGACTGGGCGGCGCCGTCAGGGGACGCCGTCGACTGGCGCTCGTTCAGGG
CGCAGCTCGTCCTCAAGGAGCAGTACGCGAAGAGCGTCAACCCGGCCCTCAGGGCGTCGTGGGCGCCGGCGGCGAAGATC
GCGGACAAGTGGGCGCACCCGCTGGTGGAGCCTGAGAAGGGGTGCCTCCTGATCGCGACGGGGAAGCTGGACGGGTCGCA
CATCTTCGAGCGCACCGTGATCCTCCTGCTGTCGGCCGGGGTGCTCGGCCCCGTCGGCGTGATCCTGAACCGGCCGTCGC
TCATGTCCATCAAGGAGGCGCAGTCCCTCTTCGCGGAGGAGGCGGACATCGCCGGCACCTTCTCCGGCCGCCCGCTCTTC
TTCGGCGGGCCGCTGGAGGAGTGCTTCTTCCTGCTTGGGCCGCGGGAGGGCGC---CAGTGCCGCCGACGACGTGGTGGG
CCGAACGGGGCTGTTCGAGGAGGTGATGCCGGGCGTGCACTACGGCACGCGGGAGAGCGTCGGGTGCGCGGCGGAGCTGG
TCAAGCGCGGGGTCGCCGGCGTGCGGGACTTCCGCTTCTTCGACGGGTTCTGCGGGTGGGAGCGGGAGCAGCTGCGCGAC
GAGGTGCGCGCTGGGCTGTGGCGTGTCGCCGCCTGCAGCCCCGCCGTTCTCGGGCTCACCGGCATCGGGGGCGGGCTGTG
GGAGGAGGTGCAGCAGCTCGTCGGAAAGAGGAGGGTGTGGTGA-------------------------------------
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>chr7D_1_TraesCS7D01G124600
TCTTCCATAGCTCGACTGTGCTTAGTCTATCTAACAATTTTTTTCCCATGTTGTCATCTTTGCAACCAATCAAAACATTT
GTCAATGTTTGGCGCAAAAAAACCTAGTTTATTCTTTATTTTATTGTACTGTTCACCTGAGC------------------
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-------------------------------TCACATGAGCTTCAGATCAGAACAACACTTTCGCTTCTAGATCGCCATG
TTCGTTGTAAAGAGCAAAAGCGGTTGCATTCAGTCTAAGGTATAAGGATATAATCCTTGCGAACATTATACCGCAATGAA
TGCTCACATTTTATGTTTTTCTTCTCGGTACCTAATTAAGTCAGGGTCGAATTGTGATACTGGTTTCATTAAAGATGACG
CTTTCATTACTTAAAAGATTAAGAATTTCACCATCAAAGACAC----CATGTGCGCAGATCATCTTACTTGATCCTTTG-
------------TCGATCGTGCTGATAAATGCCAGCCATCCTTCGTTGTTGTGTTCATTCTCATATATTCTAACAATAAT
TATTATTATTAAAATGGTTCCTTTCAATAGTTTTAATAAATTCTCTTGGTCCAGAGCTGGGCAGCCACACACACACATCC
CTTCCCTCCCCAC-------------GAGGCTCGGCGAAGACAATACT-------CCCACAGGTCGACTCGACGACTAGT
CGATGCTGAGCTCAACCCCATGCACCACGCCCATCACGCAGCAAGTAGCTAGCCGCCCCGCTGCCGTCCTCTTCTTATCC
CCAGCCCTCCCGCGCCGAGCCGTGGCCACAAACGGCGGCTGGACCACCCACACGTCGGCGTCGGCCACGCCGTGTCACTC
CACTCCTCGCGTCGCCATTGGCCCAGGTCACCAGAGAAAGAGCACTGGCAAGAGCCAGCTATATCCGCTTCGGATCGGGG
CCCTGGAAACCTGTGGAGCAGAAGCTCCGGCCATGGCCATCCCATTCTCCTATTTAGCCGCGATCTCCCCCGCATCCTGT
CACTACCAGTGAT-----CGGATCGCACAAAAAGCTTCGAAAAGCAAAAGCATGGCCCTCCCGTCGCCGGCCGGAATCGC
CAAGCCCAGGCTCCACCTTCTCTTCAACCACAGGCGCGCCAGCTCGTCCTCCGTCACCTGTGAGTGGATCTCTCGCTAGC
TCCGCCCGTGCGTGCAGTACGTCGAGT--------TCTTGCTCACTTTTGGTTTCCTCGCTTGCTTCCAGGCTGCAGCAA
CAACGGGCGGTCGTCGTCGTCTGAGCCCGAGGACTGGGCGGCGCCGTCAGGGGACGCCGTCGACTGGCGCTCGTTCAGGG
CGCAGCTCGTCCTCAAGGAGCAGTACGCGAAGAGCGTCAACCCGGCCCTCAGGGCGTCGTGGGCGCCGGCGGCGAAGATC
GCGGACAAGTGGGCGCACCCGCTGGTGGAGCCTGAGAAGGGGTGCCTCCTGATCGCGACGGGGAAGCTGGACGGGTCGCA
CATCTTCGAGCGCACCGTGATCCTCCTGCTGTCGGCCGGGGTGCTCGGCCCCGTCGGCGTGATCCTGAACCGGCCGTCGC
TCATGTCCATCAAGGAGGCGCAGTCCCTCTTCGCGGAGGAGGCGGACATCGCCGGCACCTTCTCCGGCCGCCCGCTCTTC
TTCGGCGGGCCGCTGGAGGAGTGCTTCTTCCTGCTTGGGCCGCGGGAGGGCGC---CAGTGCCGCCGACGACGTGGTGGG
CCGAACGGGGCTGTTCGAGGAGGTGATGCCGGGCGTGCACTACGGCACGCGGGAGAGCGTCGGGTGCGCGGCGGAGCTGG
TCAAGCGCGGGGTCGCCGGCGTGCGGGACTTCCGCTTCTTCGACGGGTTCTGCGGGTGGGAGCGGGAGCAGCTGCGCGAC
GAGGTGCGCGCTGGGCTGTGGCGTGTCGCCGCCTGCAGCCCCGCCGTTCTCGGGCTCACCGGCATCGGGGGCGGGCTGTG
GGAGGAGGTGCAGCAGCTCGTCGGAAAGAGGAGGGTGTGGTGACTAATTGATAC---------TGCTGCAAGGCAGCATA
TACTACTACTACTTGCTAGGTAGAAATTGTACATTATATTTGTTGTGAAAAATGCTTCACAATATAATTAATTTCCCTAT
A----ATTTTATACTTACATTACGTGTTCATATACTGAGATTAAAGCTCGAACTTTCTCCTCAGAAGTGTAAATTACTCC
ACGTACTCCCTCCGTTTTAAGATAAGTGTACTTAGTACTATTTTATACTAAAGTTGTACTAGGTCAGCGGCACTTATTTT
AAAAAGAAGAGAGTATTTCATAATATACTGCATACAATCTTGTCTCCGGCCAATTCCATTTTGTAGATTTTGACTAAAAC
ATTTCTTTCGCAGTTAATTCTTGAGAAAATTGTCCCTCTAAATTTTGACCAAATTTATGGGGAAAATGCATCAACATCTA
CAGTACCATAACAATATCATTAGATCCATCATAAAATATATTTTATCTGTTTTAT-AAATTTGACGTAAGACAAAGCTAA
TATGCAATGTGTTTTA-AAATGGAGAGAGTATCAACAGAATAAAAACACCTTGTATTTTGCATAATTTTCTGAGGTGGAC
TATGGCATGCATTGTCAACCATTACCATTTAGAGCTTGAAAGTGTCACTTAACATGGAGACATACTATAAGGAATAAAGA
GGGAGAGCCGAGCGTAGCTCAGATGGTTAGATTCCTTGTGGTGGGACCAGTTTACCGCCGTGTGGCCGTCGGCAGTGGCA
GCGCTACCTTTTGTACTTTCTCCTAGATCTGATGGGCATAGACCCTAGCTGCGCGCGCTGGGACATGATGTTGGAAATAT
GCCCTAGAGGCAATAATAAAATGGTTATTATTATATTTCCTTGTTCATGATAATTGTTTATTGTTCATGCTATAATTGTG
TTATCCGAAAATCGTAATACATGTGTGAACACATAGACCATAACATGTCCCTAGTGAGCCTCTAGTTGACTAGCTCGTTG
ATCAATAGATGGTTACGG
>chr7A_58
---------------------------------------------------------CTTTGCAACCAATCAAAACATTT
GTCAATGTTTGGCGCAATAAAAATCAG----TTTTTTATTTTACTGTGGTGTGTTGCGTTTCACATCCGTACATGGATGT
TACTATTTCCATCCTTGTTTCACTAACCGGTGATTGCGCACATTGGTGTTTGCATCATCTTGCAAATTTGATAAGAAAAA
AGCAATACCTTTGATGGATTATTTGAATTCTATAATCCTTATTTTTGTATTAGTTGTTCTAAATAATTCTATGATGCTGT
TTTCGACTTTTTCGTTTGCAGAGTTAGTAGTGTGTCCAACCTATGTTTTCTTTTTCTCTTGGTGGATGTGATAAAATTTG
CGCATTCTTGATAATTCACCTTTGTGATCTCAAGGATGATATGGTTTGAATCATCTTTAATTTGCTTTACTTCTATTTTA
CGAATTTTCTCTTTCCAGATGACTCGATGCATATGTGGTCTGGTAGATAATAATTTGCTTTGTTTTTATGTCAGTTTGGT
TGATGATGCAAAAGAGATGCTTCACTTGAGATCATGTGAGCTCTGGATTAGAACAACACTTTCGCTTCTA-ATCGTCGTG
TTGGTCATAAAGAGCAAAACCGGGTGCATTTAGTCCAAGGTATAAGGATATAATCCTTGCGAGCATTATGCCGCAATGAA
TGATCAGATTGTATGTTTTTCTTCGCGGTATCTAATTAAGTCGGGATCGAGCTGTGATACTGGTACGTGTTCCGTCATAT
ATATT--------------------------CATCAAAGACAGCATGCATGTGGGCAGATCATCTTACTTGAT-------
-GTCGATCGAGTTCGATCGTGCTGATAAATGCCAGCCATCCTTCGTTGTTGTGTTCATTCTCATATATTCTAACAATAAT
AATTATTATTAAAATGGTTCCTTTCAATAGTTTTAATAAATTCTCTTGGTCCAGAGCTGGCCAGCCACACACATG-ACAC
ATCCCT--CCCCATGAGGCCATGACTGAGGCTCGGCAAAAACAAAACA-------CCCAAGG------TCGACGACTAGT
CGAT------CTCAACCCCATGCACCACGCCCATCACGCAGCAAGTAGCTTAGCCGCCGCTCCTT------TTCTTATCC
CCAACACTCCCGCGCCAAGCCGTGGCCACAAACGTCGGCCGGACCACCCACACGTCGGCGTCGGCCATGCCGTGAC----
---------CGTCGCCATTGGCCCAGGTCACCAGAGAAAGAGCACTGGCAAAGGCCAGCTATATCCGCTCCGGATCGGGG
CCCTGGAAACCTGTGGAGCAGAAGCTCCGGCCATGGCCATCCCATCCTCCTATTTAGCCGCCATCTCCCCCGCATCCTGT
CACTACCAGTGATCTCATCGGATCGCGCAAAAAGCTTCGAAAAGCTAAAGCATGGCCCTCCCGTCGCCCGCCGGCATCGC
CAAGCCCAGGCTCCACCTGCTCCTCAACCACAGGCGCGCCAGCTCGTCGTCCGTCACCTGTGAGTGGCCG---CTCGAGC
TCTCCCCGCCCGGACCGTGCGCCGAGTTCTTGGACTCTTGCTCACTTTTGGTTTCTTCGCTTGCTTCCAGGCTGCAGCAG
CAACGGGCG---GTCGTCGTCTGAGCCCGAGGACTGGGCGGCGCCGTCAGGGGACGCCGTCGACTGGCGCTCGTTCCGGG
CGCAGCTCGTCCTCAAGGAGCAGTACGCGAAGAGCGTCAACCCGGCGCTCAGGGCGTCGTGGGCGCCGGCGGCGAAGATC
GCGGACAAGTGGGCGCACCCGCTGGTGGAGCCGGAGAAGGGGTGCCTCCTGATCGCGACGGGGAAGCTGGACGGGTCGCA
CATCTTCGAGCGCACCGTGATCCTCCTGCTGTCGGCCGGGGTTCTCGGCCCCGTCGGCGTGATCCTGAACCGGCCCTCGC
TCATGTCCATCAAGGAGGCGCAGTCCCTCTTCGCCGAGGAGGCGGACATCGCCGGCACCTTCTCCGGCCGCCCGCTCTTC
TTCGGCGGGCCGCTGGAGGAGTGCTTCTTCCTGCTGGGGCCGCGGGAGGGCGC---CAGCGCCGCCGACGACGTGGTGGG
CCGGACGGGGCTGTTCGAGGAGGTGATGCCGGGCGTGCACTACGGCACGCGGGAGAGCGTGGGGTGCGCCGCGGAGCTGG
TCAAGCGCGGGGTCGCCGGCGTGCGGGACTTCCGCTTCTTCGACGGGTTCTGCGGGTGGGAGAGGGAGCAGCTGCGTGAC
GAGGTCCGCGCAGGGCTGTGGCGTGTGGCCGCCTGCAGCCCCGCCGTTCTCGGGCTCACCGGCATCGGGGGCGGGCTGTG
GGAGGAGGTGCAGCAGCTCGTCGGAAAGAGGAGGGTGTGGTAACTAATTGATCGTACAAGGCTTACAAGGCTACATA---
---TACTAGTACTTGCTAGGTAGAAATTGTACATTATACTTGTTGTGAAAAATGCTTCACAAGATAATTAATTTCCCTAT
A----ATTTTTTACTTACGTTACATGTTCATA--CAGAGATTAAAGACCAATCTTTCT----------------------
---------------------------------------------------------------------------ATTTT
GGGACGGACAGAGTATTTGACG------TGCATATAGGCTTGTCTCCGGTCAATTCCTTTCTATAGATTTTGACTAAAAC
ATTTCTTTTGCGATTAATTATTGAGAAAATTGTCCCTCTAAATTTTGACAAAAATTACGGGGAAAATGCATCAACATCTA
CAGTACCATAACAATATCATTAGATCCATCATAAAATATATTTTATTTTTTAAATAAAATTTGACATAACACGAAGCTAA
TATGCAATGTGTTTTAAAAATGGAGAGAGTATCAACAGAGTAAAAACACCTTGTATTTTGCATAACTTTTTCAGGCGAAT
TATGGCATGCACTGTCGACCATTACCCTTTAGAGGTAGAAAGTGTCACTTAACATGGAGACAAATTATAAGGAATAAAGA
GGGAGA--------------------------------------------------------------------------
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>chr7B_383
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-------------------------------CATCAAAGACAC----CATGTGGGCAGATCATCTTACGTGATCCTTCGT
TGTCGATCGAGTTCA----TGCTGATAACTGCCAGCCCTCCTTCGTTGTTGTGTTCATTCTCATAGTTC-------TAAT
AATAGTAATAATAATGGTTCCTTTCAATAGTTTTAATAAATTCTCTTGGTCCAGAGCTGGCCAGCCACACACACACACAC
ATCCCT--CCCAC-------------GAGGCTCGGCAAAAACAATACTGAATACTCCCAAGG------TCGACGACTAGT
CGATGCTGAGCTCAACCCCATGCACCACGCCCATCACGCAGC--------------CCCGCTGCCGTCCTCTTCTTATCC
CCAGCCCTCCCGCGCCAAGCCGTGGCCACAAACGGCGGCTGGACCACCCACACGTCGGCGTCGGCCACGCCGTGTCACTC
CACTCCTCGCGTCGCCATTGGCCCAGGTCACCAGAGAAAGGGCACTGGCAAAAGCCAGCTACATCCGCTTCGGATCGGGG
CCCTGGAAACCTGTGGAGCGGAAGCTCCGGCCATGGCCATCCCATCCTCCTATTTAGCCGCGATCTCCCCCGCATCCTGT
CACTAACCAGTG----ATCGGATCGCACAAAAAGCTCCGAAAAGCAGAAGCATGGCCCTCCCGTCGCCGGCCGGCATCGC
GAAGCCGAGGCTTCACCTTCTCTTCAACCACAGGCGCACCAGTTCGTCGTCTGTCACCTGTGAGTGGCCA---CTCGAGC
TCCGCCCGTACGTATAGTACGCCGGGT--------TCTTGCTCACTTTTGGTTTCTTCGCTTGCTTCCAGGCTGCAGCAA
CAACGGACGGTCGTCGTCGTCTGAGCCCGAGGACTGGGCAGCGCCGTCCGGAAACGCCGTCGACTGGCGCTCGTTCCGGG
CGCGGCTCGTCCTCAAGGAGCAATACGCGAAGAGCTTCAACCCGGCGCTCAGGGCGTCGTGGTCGCCGGCGGTGAAGGTC
GCGGACAAGTGGGCGCACCCGCTGGTGGAGCCGGAGAAGGGGTGCCTCCTGATCGCGACGGGGAAGCTGGACGGGTCGCA
CATCTTTGAGCGCACCGTGATTCTCCTGCTGTCGGCCGGGGTGCTGGGCCCCGTGGGCGTGATCCTGAACCGTCCGTCGC
TCATGTCCATCAAGGAGGCGCAGTCCCTCTTCGCGGAGAAGGCGGACATCGCCGGCACCTTCTCCGGCCGCCCGCTCTTC
TTCGGCGGCCCGTTGGAGGAGTGCTTCTTCCTGCTGGGGCCGCGGGAGGGCGGAGACGGCGACGGCGGCGACGTGATGGG
CCGGACGGGGCTGTTCGAGGAGGTGATGCCGGGCGTGCACTACGGCACGCGGGAGAGCGTCGGGTGCGCGGTGGAGCTGG
TTAAGCGCGGGGTCGCCGGCGTGCGGGACTTCCGCTTCTTCGACGGGTTCTGCGGGTGGGAGCGGGAGCAGCTGCGCGAC
GAGGTGCGCGCTGGGCTGTGGCGTGTCGCCGCCTGCAGCCCCGCCGTTCTCGGGCTCACCGGCATCGGGGGCGGGCTCTG
GGAGGAGGTGCAGCAGCTCGTCGGAAAGAGGAGGGTGTGGTGACTAATTGATAC---------TACAAGGCTACATA---
---TACTACT--TTGCTAGGTAGAAATTGTACATTATATTTATCGTG-AAAATGCTTCACGAGATAATTAATTTCCCTAT
ATACAATTTTGTACTTACATTACATGTTCATA--CAGAGATTAAAGATCGAACTTTCTCATCAGAAGTGTAAAGTCTCCA
C-------------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------
-----------------S----SSS--SSSS--S---------S---SS---SSSS-SSSS-------------------
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----------------------------------SS------SSS---S---------------------S----S-S--
--S--SS------------S---S------S----S--------------------------S------S----------
--S---S---S-------------S-----S-----------S--S----SS------------SSSSS-SSS-SSSSSS
S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------S-----------------------S--
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S-----------------------------------------------------------S----------------SS-
S-S--SSS----------------------------S--S-------------------SS-SSSSSS------------
--------------------------------------------------SSS-SS------------------------
----------------S---------------------------------------------------------------
---------------------------------------------------S----------------------------
---------------------------------------------S----------------------------------
--------------------------------------------------------------------------S-----
------------------------------------------------S------------------SSSSSS-S-S---
---------S---S-------S---------------------------------S------------------------
----------------------------------------------------------------------------S---
----------------------------------------------S---------------------------------
--------------------------------S-----------------------------------------------
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-----------------------------------S-----------------------S--------------------
---S----------------------------------------------------------------------------
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----------------------------------------------------------------S-SSSSSSS--SSSSS
SSS-----------------------------------------------------------S-----------------
----------S------------S--------SS-S----------S------------S-------------S-SSS-S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
SSS-S-S-S---------S-SSSSSSSS------S-SS-----------S-------S--S-S-----------------
--------S--SS------S-----------------------------S---S---S----------------------
----------------------------------------------S-S--SS------------S---S--S-------
---------------------------------------S-------------------------S---S-S---S-S-S
-----------S----S---------S-------S-S-------------------------S-S---------------
------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS
>forward_1046
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------------------------------------------------------------------ACACACACACATCC
CTTCCC--------------------------------------------------------------------------
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>reverse_2758
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-------------------------------------TCTTGTCTCCGGCCAATTCC-----------------------
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