>input_sequence_64924
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-----------------------------------------------------------------------CCCACGCCT
ACACGGACAGGGTTGATGTGATCGTGTGAATATATGTAGCTCCCGCCGGTATACATCGCTACAACCTATTAC-----CTG
CGATCGACTATGATGATCGACGACGCCTCCACCTCGACCCTAACCACCACGGTGACCACCGGCAGCCATGTCCTCAGAAT
TAACGGCTATACGGAGACAAAGCTCCTCGGCAACGGCGTGGCGGCCCCGTCCGGCGAGTTCGAGGCAGCCGGCCACCGCT
GGCGGATCCACTACTACCCCAACGGAGGATCGTGGAACAACGCCGACGGCATCTCTCTCGCCCTCAGCATCGCCGACAAG
TACGTCCTCAGCCATGTCAACGCAAACGTCCGGTTCTCTCTCGTCCCTCACGACGGCAAGAAGCCGGCGCCGGCCAAGCT
CAAGCACTACCGTTCCAGTTTCGGGGGCGTCTTCAAGTTCAACGGCCATGTCATCGGCGAACGGTCTAGGTTCATGGGAA
GAGACCAGCTAGAGAAGTCGGGTTACGTCGTGGACGACTGCTTCATCGTCAGGTGCGACATCGATGTCGTCGTCACGTCG
GCGGCTAGAGTGTTTGGCAGCACGGCCACGGATGCTTGTGATGATCTCGAGGAGGCGGAGCTCCCCTGCAGCAGCATGGT
TCAGGAGGACATGTGCAAGCACGAGGACAACGTCGTTGGCGGCCACGCAACGGATACGGAAGACCCTTCCGATATCGGGT
TGGCGAAGCTGCACCGCTCGGGACCAAGGCAACCCAAGATGATGATGCATCCGATGTCCGCCGCTCTTTTCTCTTCTGTC
TTCTCATGTTTTGCAGATTTTTTCTAGACATATATTGACCTTTTTAGATTGTAATTTGTAGT-CATTACTATATCATTTA
CCATATGGAAACTAGTAGCTCATCCAATGCAGC--CTCTCTATAAATTTTGATTTGACGA--------------------
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>chr3A_1_TraesCS3A01G020000
AGAAGATGACAAAACGCTGCAGTTTTGCTACATGCTTCAACCGGTATAG-ATTTTGCTACAACTAGGGTCACGTTTTGCT
ACAACACACAGCCGGCGTTGT-GGTTTTGCCACAACTAGCATCAC--TTTTTGCTACAACTGG-CATAATGTATTGCTAC
ATCCAGCACGGCCGAGCTGTGACCCGCGGCGG---CG---ACGACGAC-TTTTTGTTGCAACCGTCGTAGGTATTTGCTA
CGTCTAGCAACGGGTTTTGTTACATCCGTTCATT-ATGCAAATGTTGCTACCTGCAACGGCGAGCTACAACCAGTGAAAA
CGGCGTCGTTTCTTTTTTGCTGCAACCGTGTCTTCATTTTGCTACGACAAACAATGAAAAATGCTACAACGGGCAATTCT
ATTTGCTGGAACCAGTCAATCACCAGCGAGGCGGAGCTGCATCCATGGCGTGCGCGAC-GGTGA-GGGCGGGATCCATCC
ATGGCGAGCGTGGGCGGTGAAGCTGCATCCATGGCAAGCG-C-GGGTGACAGAGTTGCATCCATGGTGAGCGCAGATCTC
TGACGAGTGCGGGCAGCGAAGCTGCATCCATGGCGAGCGCGGATCTCAGGCAAGCGCGGACAGCCGGCGAGGGCTCCCAC
CGACGATGAGGAACGCCGCGGTGGTGCTTCAAGCTCGGTTGTTTTCTTGCGGGGATATGACGTGGTGTCGACGGCGCTCG
GGT-C-GTTGCAATTTTTTTT------GAAAAAATGACTCATGAGGAGGACGAAGCGAGGGACAAATCTGACGGTCATTA
ATCGCTGCATCGGGCGGCTAGGGCTGGACCTGCCCAACTGTTGGGTCGGTGCGCCGGCGCCTAGTGTCGCCCATATTGAA
ATGCCTAAAAGACTTATATTTAGGAACAAAGAGAGTAGTAGCTACCAAAGGATTTACACA--ACAAAATACATCAACGAT
GGGACAACAAGACGGTGACAGTCGGAGTCGGAGAGGATATATAGCCC----TATCCGGATCGAAATATATACCCACGCCT
ACACGGACAGGGTTGATGTGATCGTGTGAATATATGTAGCTCCCGCCGGTATACATCGCTACAACCTATTAC-----CTG
CGATCGACTATGATGATCGACGACGCCTCCACCTCGACCCTAACCACCACGGTGACCACCGGCAGCCATGTCCTCAGAAT
TAACGGCTATACGGAGACAAAGCTCCTCGGCAACGGCGTGGCGGCCCCGTCCGGCGAGTTCGAGGCAGCCGGCCACCGCT
GGCGGATCCACTACTACCCCAACGGAGGATCGTGGAACAACGCCGACGGCATCTCTCTCGCCCTCAGCATCGCCGACAAG
TACGTCCTCAGCCATGTCAACGCAAACGTCCGGTTCTCTCTCGTCCCTCACGACGGCAAGAAGCCGGCGCCGGCCAAGCT
CAAGCACTACCGTTCCAGTTTCGGGGGCGTCTTCAAGTTCAACGGCCATGTCATCGGCGAACGGTCTAGGTTCATGGGAA
GAGACCAGCTAGAGAAGTCGGGTTACGTCGTGGACGACTGCTTCATCGTCAGGTGCGACATCGATGTCGTCGTCACGTCG
GCGGCTAGAGTGTTTGGCAGCACGGCCACGGATGCTTGTGATGATCTCGAGGAGGCGGAGCTCCCCTGCAGCAGCATGGT
TCAGGAGGACATGTGCAAGCACGAGGACAACGTCGTTGGCGGCCACGCAACGGATACGGAAGACCCTTCCGATATCGGGT
TGGCGAAGCTGCACCGCTCGGGACCAAGGCAACCCAAGATGATGATGCATCCGATGTCCGCCGCTCTTTTCTCTTCTGTC
TTCTCATGTTTTGCAGATTTTTTCTAGACATATATTGACCTTTTTAGATTGTAATTTGTAGT-CATTACTATATCATTTA
CCATATGGAAACTAGTAGCTCATCCAATGCAGC--CTCTCTATAAATTTTGATTTGACGAGGCAATTATTTTCTGCCTTC
TACATCATTTTATACATTTAT--------------------------TAATTTGCGAACCAATTTGTGATTGGACGGTTA
GAGGGCTGTGC-TATCCTAGGCCCATCAGGGTTTAAATCCTGATGCTCGCATTTATTTTTGAATTTATTTCAGAATTTCC
GACGATGCGTATTCAGTTGAAGAAGACGTTCCCGTCGATGACGAGGTGCCTACAGTTACTTCGTAAATTTTAAGATGATA
TGCCGACTTGTGTGAATATGAGCACTTGCGTTTGTACTGTGTTTAAGAAAACACCTGCTATTCATGACACCTAGTATTTT
GGAACGGAGAGAGTAGCAGATAGTACAAGGTAAGTGTACAGAAGGCCGTGGTGGTTTCAGAAAATTTCACATGACACACT
TATACGTCACAAAATTCTATTGCTAGATTGCAATCCGAATTGGATGAACAGCACGAACTTCATATCCATGTGGCCAGCTC
ATAGTAACACATCCGAGGCTCGTGAATGTTTTCTCTCTAGTTTTCTCATGATTTGTTGAC--TTTTTTCTGGACAGTGAT
ATATTTATGTTTTTTCTTTCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGGCACATCTCTGCCGATGATCC---------GTCTCCTCTTTGTCC
GTTTTTCCGACAGCCGGTAGCGGGGAGGAAAATCCTGGTTCTTAGGTCCGGCTAGTAG
>chr2D_1
AGAAGATGACAAAATGCTGCAGTTTTGCTACATGCTTCAACCGGCATAGCATTTTGCTACAGCTAGGGTCACGTTTTGCT
ACAACACACAACCGGCGTTATGG-TTTTGCTACAACTAGCATCTC--TTTTTGCTACAACC-G-CATAATGTTTTGCTAC
ATCCAGCACGGCCGAGCTGCGACCCGCGACGG---CG---ACGACGAC-TTTTTGTTGCAACCGTCGTAGGTATTTGCTA
CACCCGGCAACGGGTTTTGTTACATCCGTTCATT-ATGCAAATGTTGCTACCTGCAACGGCGAGCTACAACCAGCGAAAA
CAACGACGTTTCCTTTTTGCTGCAACCGTGTCTCCATTTTGCTACGACAAACAACGAAAAATGCTACAACGGGCAATTCT
ATTTGCTGGAAACGGTCAATCACCAGCGAGGCGGAGCTGCATCCATGGCGTGCGCGGGTGGCGA-GGGCGGGATCCATCC
ATGGTGAGCGTGGGCGGCGAAGCTGCATCCATGGCAAGCG-C-GGGCGGTGGAGCTGCATCCATGGTGAGCGCAGATCTC
TGAGGAGCACGGGCGGCGAAGCTGCATCCATGGCGAGCGCGGATCTCGGGCAAGTGCGGCCGGCCGGCGAGGGCGCCCAC
CGGCGACGAGGAACGCCGCGGTGGTGCTTCAAGCTCGGCCGTTTTCTCGCGGGGATATGGCGTGGTGTCGGCGGCGCTCG
GGC-C-GTTGCAATTTTTTTTTTCTTTGGAAAAATGACTCGTGAGGAGGATAAAGCGAGGGACAGATCTGACGGTCATTA
ATCGCTGCATCGGGCGGCCAGGGCTGGACCGGCCCAACCATTGGGCCGGTGCGCCGGAGCCTAGCGTCGCCCAT------
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>chr7A_1
AGAAGATGATAAAACGCTGCAGTTTTGCTACACGCTTCAACCGACATAGCATTTTGCTACCACCGGCATCACGTTTTGCT
ACAACACATAGCTGGCGTTGC-G-TTTTGCTACAACTAGCATCGC--TTTTTGCTACAACC-GGTATAACGTTTTGCGAC
ATCCATCACGGCTGAGCTGCGAGGCTCGACAG---CG---ACGACGAC-ATTCTGCTGCAACCGTCGTAGGCTTTTGCTA
CATCCTGCAATGGGTTTTGTTACATCCGTCCATT-ATGCAAATGTTGCTACCTGCAACGGCGAGCTACAACCAGTGAAAA
CGGCGACGTTTCTTTTTTGCTGCAACTGTGTCTCCATTTTGCTACAACAAACAACGAAAAATGCTACAACGGGCAATTCT
ATTTGCTGGAACCAGTCAATCACCAGCGAGGCGGAGCTGCATCCATGGCGTGCACGGGCGGTGAGGGGCGGGATCCATCC
ATGGCGAGCGTGAGCGGCGAAGCTGCATCCATGGCAAGCG-A-GGACGGCAAAGCTGCATCCATGGTAAGTGCAAATCTC
TGACGAGCGCGGGCGGCGGAGCTGCATCCATGGCGAGCGCGGATCTCGGGCAAGCGCGGACGGCCGGCGAGGGCGCCCAC
CGGCGACGAGGAACGCCACGGTGGTGCTTCAAGCTCGACCGTTTTCTCGCGGGGATATGGCGTGCTGTCGGCGGCGCTCG
GGC-C-GTTGTAATTTTTTTTTTT----GAAAAATGACTCGTGAGGAGAACGAAGTGAGGGACAGATCTGACAGTAATTA
ATCGATGCATCGGGCGGCCAGGGCTGGACCGGCCCAACTGTTGGGCCGGTGCGCCGGCGCCTAGCGTCGCCC--------
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>chr1A_1
AGAAGATGATAAAATGCTGCAGTTTTGCTACATACTTCAACCGACATAG-ATTTTGCTACAACGGGCGTCACGTTTTGCT
ACAACACATAGCCGGCGTTGT-G-TTTTGCTACCACTACCATCAC--TTTTCGCTACAACTGG-CATAACATTTTGCGAC
ATCCATCACAGCTAAGCTGCGAGTCTTGACAGCGACG---AC---GACATTTTTGCTGCAAGCGTCGTAGGTTTTTGCTA
CATCCGGCAACGGGTTTTGTTACATCCGTTCATT-ATGCAAATGTTGCTACCTGCAACGGCGAGCTACAACAAGCGAAAA
CAACGACGTTTCTTTTTTGCTGCAACCATGTCTCCATTTTGCTACGACAAACAACGAAAAATGCTACAACGGGCAATTCT
ATTTGCTGGAACCAGTCAATCACCAGCGAGGCGGAGCTGCATCCATGGCGTGCGCGGGCGGCGAGGG-CAGGATCCATCC
ATGACGAGCGTGGGCGGCGAAGCTGCATCCATCGCAAGCG-C-GGGCGGCGGAGCTGGATCCATGGTGAGCGCAGATCTC
TGACAAGCGCGGACGGCGGAGCTGCATCCATGGCGAGCGCGGATCTCGGGCAAGCACAGACGGCTGGCGAGGGCGCCCAT
CGGCAATGTGGAACGCCATAGTGGTGCTTCAAGCTCGGCCGCTTTCTCACGGGGATATGGCGTGCTTTCGGCGGCGCTCG
GGC-C-GTTGCAATTTTTTTT------GGAAAAATGACTCGTGAGGAGGACGAAGCGAGGGACAGATCTAACGGTTATTA
ATCGCTGCATCGGGTGGCTAGGGTTGGACCGGCCCAACTATTGGGCCGGTGCGCCAGCACCTAGCGTCGCCC--------
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>chr1A_1
AGAAGATGATAAAACGCTGCATTTTTGCTACATACTTCAACCGACATAG-ATTTTGCTACAACCGGCATCACGTTTTGCT
ACAACACATAGCCGGCGTTGC-A-TTTTGCTACCACTACCATCAC--TTTTCGGTACAACTGG-CATAACATTTTGCGAC
ATCCATCACTGCTAAGCTGCGAGTCTCGACGG---CGACAAC---GACATTTTTGTTGCAAGCGTCGTAGGTTTTTGCTA
CATCCGGCAACGGGTTTTGTTACATCCTTTCATT-ATGCAAATGTTGCTACCTGCAACGGCGAGCTACAACAAGCGAAAA
CAATGATGTTTCTTTTTTGCTGCAACCATGTCTCCATTTTGCTACGACAAACAACGAAAAATGCTACAACGGGCAATTCT
ATTTGCTGGAACCAGTCAATCACCAGCGAGGCGGAGCTGCATCCATGGCATGCGCGGGCGGCGAGGG-CAGGGTCCATCT
ATGACGAGCGTGGGCGGCGAAGCTGCATCCATGGCAAGCG-C-GGGCGGCGGAGCTGCATCCATGGTGAGCGCAGATCTC
TGACAAGCGCGGAGGGCGGAGCTGCATCCATGGCGAGCGCGGATCTCGGGCAAGCACAGATGGCTGGCGAGGGCGCCCAT
CGGCGACGTGGAACGCCACAGTGGTGCTTCAAGCTCGGCCGCTTTCTCGCGGGGATATGGCGTGCTTTCGGCGGCGCTCG
GGC-C-ATTGCAATTTTTTTT------GGAAAAATGACTCGTGAGGAGGATGAAGCGAGGGACAGATCTAACGGTTATCA
ATCGCTGCATCGGGTGGCTAGGGCTGGACCGGCCCAACTGTTGGGCCGGTGCGCCGGCGCCTAGCGTCGCCC--------
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>chr2D_33
--------------------------------TGCTACAACCGGCATATCATTTTGCTACAGCTAGGGTCACGTTTTGCT
ACAACACACAGCCGGCGTCGTGG-TTTTGCTACAACTAGCATCGC--TTTTTGCTACAACC-GGCATAATGTTTTGCTAC
ATCCAGCACGGCCGAGTTGCGACCCGCGACGG---CG---ACGACGACTTTTTTGTTGCAACCGCCGTAGGTATTTGCTA
CGTCCGGCAATGGGTTTTGTTACATCCGTTCATTGATGAAAATGTTCCTACCTGCAACGGCGAGCTACAACCAGCGAAAA
CGGTGACGTTTCTTTTTTGCTGCAACCGTGTCTCCATTTTGCTACGACAAACAACGAAAAATGCTACAACGGGCAATTCT
ATTTGCTGGAACCAGTCAATCGCCAACGAGGCGGAGCTGCATCCATGGCGTGCGCGGGCGGCGAGGGGCGGGATCCATCC
ATGGCAAGCGTGGGCGGCGAAGCTGCATCCACGGCAAGCGCT-GGGCGGCGGAGCTGCATCCATGGTGAGCGCACATCTC
TGATGAGCGCGGGCGGCGGAGCTGCATCCATGGCGAGCGCGGATCTGGGGCAAGCGTGGACGGCCGGCGAGGACGTCCAC
CGGCGACGAGGAACGCCGCGGTGGTGCTTCAAGCTCGGCTGTTTTCTCGCGAGGATATGGCGTGGTGTCACCGGCGCTCG
GGC-C-GTTGTAATTTTTTTT------GGAAAATTGACTCAGGAGGAGGACAAAGCAAGGGACAGATCTGACGGTC--TA
ATCCCTGCGTCGGGCGGCCAGGGCTGGATCGGCCCAACTGTTGGGCCGGTGCGCCGGCGCCTAGCGTCG-----------
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>chr4D_33
--------------------------------TGCTACAATCGGCATATCATTTTGCTACAGCTAGGGTCACGTTTTGCT
TCAACACACAGCCGGCGTCGTGG-TTTTGCTATAACTAGCATCGC--TTTTTGCTACAACC-GGCATAATGTTTTGCTAC
ATCCAACACGGCCGAGTTGCGACCCGCGACGG---CG---ACAACGACTTTTTTGTTGCAACCGTCGTAGGTATTTGCTA
CGTCCGGCAATGGGTTTTGTTACATCCGTTCCGTGATGCAAATGTTCCTACCTGCAACGGCGAGCTACAACCAGCGAAAA
CGGCGACGTTTCTTTTTTGCTGCAACCGTGTCTCCATTTTGCTACGACAAACAACGAAAAATGCTACAACGGGCAATTCT
ATTTGCTGGAACCAGTCAATCGCCAACGAGGCGGAGCTACATCCATGGCGTGCGTGGGCGGCGAGGG-CGGGATCCATCC
ATGGCGAGCGTGGGCAGCGAAGCTGCTTCCATGGCAAGCGCC-GGGCGGCGGAGCTGCATCCATGGTGAGCGCAGATCTC
TGATGAGCGCGGGCGGCGGAGCTGCATCCATGGCGAGCGTGAATCTGGGGCAAGCGCGGACGACCGGCGAGGGCGCCCAC
CGGCGACGAGGAACGCCGCGGTGGTGCTTCAAGCTCGGCTATTTTCTCGCGAGGATATGGCGTGGTGTCGGCGGCGCTCA
GGC-C-GTTGCAATTTTTTTT------GGAAAATTGACTCAGGAGGAGGACAAAGCGAGGGACAGATCTGACGGTC--TA
ATTGCAGCATCGGGCGGCCAGGGCTGGACCGGCCCAGCTGTTGGGCCGGTGCGCCGGCGCCTAGCGTCGCCCTATA----
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>chr1D_33
--------------------------------TGCTACAACCGGCATATCTTTTTGCTACAGCTAGGGTCACGTTTTGCT
ACAACACA--GCCGGCGTCGTGG-TTTTGCTACAACTAGCATCGC--TTTTTGCTACAACC-GGCATAATGTTTTGCTAC
ATCCAGCACGGCCGAGTTGCGACCCGCGACGG---CG---AC---GACTTTTTTGTTGCAACCGCCGTAGGTATTTGCTA
CGTCCGGCAATGGGTTTTGTTACATCCGTTCATTGATGAAAATGTTCCTACCTGCAACGGCGAGCTACAACCAGCGAAAA
CGGTGACGTTTGTTTTTTGCTGCAACCGTGTCTCCATTTTGCTACGACAAACAACGAAAAATGCTACAACGGACAATTCT
ATTTGCTAGAACCAGTCAATCGCCAACGAGGCGGAGCTGCATCCATGGCGTGCGCGGGCGGCGAGGG-CGGGATCCATCC
ATGGCGAGCGTGGGCGGCGAAGCTGCATCCACGGCAAGCG-CCGGGCGGCGGAGCTGCGTCCATGGTGAGCGCAGATCTC
TGATGAGCGCAGGCGGCGGAGCTGCATCCATGGCGAGCGCGGATCTGGGGCAAGCGCGGACGGCCGGCGAGGATGCCCAC
CGGCGACGAGGAACGCCGCGGTGGTGCTTCAAGCTCGGCTGTTTCCTCGCGAGGATATGACGGGGTGTCGCCGGCGCTC-
GGG-C-GTTGCAATTTTTTTG------GGAAAATTGACTCAGGATGAGGACATAGCGAGGGACAGATCTGACGGTC--TA
ATCGCTGCATCGGGCGGCCAGGGCTGGACCGGCCCAACTGTTGGGCCGGTGCGCCGGCGCCTAGCGTCGCCCTTTTTGAA
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>chr1D_33
--------------------------------TGCTACAACCGGCATAGCATTTTGCTATAGCTAGGGTCACGTTTTGCT
ACAACACACAGCCGGCGTTATGG-TTTTGCTACAACTAGCATATTTTTTTTTGCTACAACC-GGCATAATGTTTTGCTAC
ATCCAGCATGGCCGAGCTGCAACCCGCGACGG---TG---ACGACGAC-ATTTTATTGCAACCGTCATACGTATTTGCTA
TGTCCGGCAACGGGTTTTGTTACATCCGTTCATT-ATGCAAATGTTGCTACCTGCAACGGCGAGCTACAACCAGCGAAAA
CGGCGACGTTTCTTTTTTGTTGCAACCGTGTCTCCATTTTGCTACGACAAACAACGAAAAATGCTACAACAGGCAATTCT
ATTTGCTAGAACCAGTCAATCACCAGCAAGGCGGAGTTATATCCATGGCGTGCGCGGGCGGCGAGCG-TGGGATCCATCC
ATGGCGAGCGTGGGCGGCGAAGCTGCATCCATGGCAAGCG-A-GGGCGGCGGAGCTGCATCCATGGTGAGCGCAAATCTC
TGACGAGCGC-GGCGGCGAAGCTGCATCCATGGCGAGCGCAGATCTCGGGCAAGCGCGGACGGCCAGCGAGGGCGCCCCC
CGGCGACGAGGAACGCCGCGGTGGTGCTTCAAGCTCGACCGTTTTCTCACGGGGATATGGCGTGATGTCGGCGGCCCTC-
GGG-CTGTTGCATTTTTTTTT------GGAAAAACGACTCGTGAGGAGGATGAAGCGAGGACTGAATCTGACGGTCATTA
ATCGCTACATCGGGCGGCCAGGGCTGGACCGTCCCAACTGTTGGGCCGGTGCGCCGACGCCTAGCATCGCCC--------
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>chr5A_33
--------------------------------TGCTACAACCGGCATATCATTTTGCTACAACTAGGGTCACGTTTTGCT
ACAACACACAGCCGGCGTCGTGG-TTTTGCTACAACTAGCATTGC--TTTTTGCTACAACC-GGCATAATGTTTTGCTGC
ATCCAGCACAGCCGAGTTGCGACCCGCGACGG---CG---ACGACGACTTTTTTGTTGCAACCGTCGTAGGTATTTGCTA
CGTCCAGCAATGGGTTTTGTTACATCTGTTCATTTATGCAAATGTTCCTACCTCCAACCGCGAGCTACAACCAGTGAAAA
CAGCGACGTTTCTTTTTTGCTACAACCGTGTCTCCATTTTGCTACGACAAACAAAGAATAATGCTACAACGGCCAATTCT
ATTTGTTGGAACCAGACAATCACCAACGAGGCGGAGCTGCATCCATGGCGTGCGCGGGCGACGAGGG-CAGGATCCATCC
ATGGCGAGCGTGGGCGACGAAATTGCATCCATGGCAAGCGCC-GGGCGGCGGAGCTGCATCCATGGTGAGCGCAGATCTC
TGATGAGCGCGGGCGGCAGAGCTGCATCCATGACGAGCGCGGATCTGGGGCAAGCGAGGACGGCCGGCAAGGGCGCCCAC
CGGCGACGAGGAACGCCGCGGTGGTGCTTCAAGCTCGGCTGTTTTCTCGCGAGGATATGGCGTGGTGTCGGTGACGCTC-
GGGCC-GTTGCAATTTTTTTT------GAAAAATTAACTCGGGAGGAGGAGAAAGCGAGGGACAGATCTGACGGT--TTA
ATCGCTGCATCGGGCGGCTAGGGCTGGACCGGCC-AACTGTTGGGCTGGTGCGTCGGCGCCTAGGTCGC-----------
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>chr3B_890
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----------------------------------GTAGGAGCTACCAAAGGATTTACACACAACAAAATACATCGACGAT
GGGACAACAACACGGTGACAGTCGGAGTCGGAGAGGATATATAGCCC----TATCCGGATCGAAATACGTACCCACACCT
ACACGGACCGGGTTGATGTGATGATGTGAATATATGTAGCTCCGGCGGCTATCCATCGCCACAACCTATGCTATGCACTG
CGATCCACTATGATGATCGACGACGCCTCCACCTCGACCCTGACCACCACGGTGACCACCGGCAGCCACGTCCTCAGAAT
CAACGGCTACGCGGAGACAAAGCTCCTCGGCAACGGCGTGGCCGCCCCGTCTGGCGAGTTCGAGGCCGCCGGCCACCGCT
GGCGGATCCACTACTACCCCAACGGGGGATGGTGGAACAACGCCGACGGCATCTCTCTCGCCCTCAGCATCGCCGACAAG
TACGTCCTCAGCCATGTCAACGCAAATGTCCGGTTCTCTCTCGTCCCTCACGACGGCAACAAACCGGCGCCTGCCAAGTG
CAAGCATTACCGTTCCAGTTTCGGAGGCGTTTTCATGTTCAACGGCCATGTCATCGGCGAACGGTCTAGGTTCATGGGAA
GAGACCAGCTAGACAAGTCGGGTTACGTCGTGGATGACTGCTTCATCGTCCGGTGCGACATCGACGTCGTCGTCACGTCG
GCAGCTATGGTGATGGGAAGCACAGTCGCGGATGCGTGTGATGATCTGGAGGAGGCGGAGCTCCCCTGCAGCAGCATGGT
TCAGGAGGACATGTGCAAGCACGAGGACAACGTCTTTGGTGGCTGCACTACGGATACGGAGAATGCTTCCGATATCGGGT
TGGCGAAGCCGCACCGCTCGGGACCAAGGCAACCCAAGATGATGATGCATCCGATGGCCGCCGCTGTTTTCTCTTCTGTT
TTCTCATGTTTTGCAGATTTTTTCTAGACATATATTCAACTTTTTAGTTTGTAATTTGTAGT-CACTATTATATCATCTA
CCATATGGAAACTAGCATCTCATCCAGTGCAACCTCTCTCTATAAATTATGATTTGACAAGGCAATTATTTTCTGGCTTC
TACATCAGTTAATACA----------------------------------------------------------------
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>chr3D_893
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-------------------------------------GTAGCTGCCAAAGGATTTACACACAACAAACTACTTCGACGAT
GGGACAACAACACGGTGACAGTCGGAGTCGGAGATGATATATAGCCTTACGTATCCGGATCGAAATATATACCCACACCT
ACACGGACAAGGTTGATGTGATCATGTGAATATATGTAGCTCCGGCCGGTA-CCATCGCCACAACCTATGCTAGGCACTG
CGATCGACTATGATGATCGACGACGCCTCCACCTCGACCCTAACCACCACGGTGACCACCGGCAGCCACGTCCTCAGAAT
TAACGGCTATACGGAGACAAAGCTCCTCGGCAACGGCGTGGCGGCCCCGTCCGGCGAGTTCGAGGCCGCCGGCCACCGCT
GGCGGATCCACTACTACCCCAACGGGGGATGGTGGAACAACGCCGATGGCATCTCTCTCGCCCTCAGCATAGCAGACAAG
TACGTCCTCAGCCATGTCAACGCGAACGTCCGGTTCTCTCTCGTCCCTCACGACGGCAAGAAGCCGGCACCGGCCAAGCT
CAAGCACTACCGTTCCAGTTTCGGCGGCGTCTTCAAGTTCAACGGCCATGTCATCGGCGAACGGTCTAGGTTCATGGGAA
GAGACCAGCTAGAGAAGTCGGGTTACGTCGTGGATGACTGCTTCATCGTCAGGTGCGACATCGACGTTGTCGTCACGTCG
GCGGCTAGGGTGGTTGGCAGCACGGCCACGGATGCGTGTGATGATCTCGTGGAGGCGGAGCTCCCCTGCAGCAGCATGGT
TCAGGAGGACATGTGCAAGCACGAGGACAACGTCGTTGGCGGCCACGCAACGGATACGGAGGACCCTTCCGATATCGGGT
TGGCGAAGCCGCACCGCTCGGGACCAAGGCAACCCAAGATGATGATGCATCCGATGGCCGCCA------------CTGTT
TTCTCATGTTTTGCAGATTTTTTCTAGACATATATTCAACATTTTAGTTTGTAATTTGTAGTGCACTATTATATCATCTA
CCATATGGAAACTAGCATCTCATCCAGTGCAACCTCTCTCTATAAATTTTGATTTGACAAGGCAATTATTTTCTGGCTTC
TACATCAGTTAATACA----------------------------------------------------------------
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>chr3B_932
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------------------------------------------------------------------------------AT
GGGACAACAACACGGTGACAGTCGGAGTCGGAGAGGATATATAACCC----TGTCCGGATCGAAATATATACCCACGCCT
ACACGGACAGGGGTGATGTGATCATGTGAATATATGTAGCTCCGTCAGGTATCCATCGCCACAAC-----CTATGCACTG
CGATCGACTATGATGATCGACGACGCCTCCACCTCGACCCTAACCACCACGGTGACCACCGGCAGCCATGTTCTCAGAAT
CAATGGCTACACCGAGACAAAGCTCCTCGGCAACGGCGTGGCCGCCCCGTCCGGCGAGTTCGAGGCCGCCGGCCACCGCT
GGCGGATCCACTACTACCCCAACGGGGGATGGTGGAACAACGCCGACGGCATCTCTCTCGCCCTCAGCATCGCCGACAAG
TACGTCCTCAGCCATGTCAACGCAAACGTCCGGTTCTCCCTCGTCCCTCACGACGGCAACAAGCCCACGCCGCCCAAGCG
CAAGCACTACCGGTCCAGTTTCGGTGGCGTCTTCAAGTTCAACGGCCATGTCATCGGTGAACGTTCTAGGTTCATGGGAA
GAGACCAACTAGAGAAGTCGGGCTACGTCGTGGACGACTGCTTCATCGTCCGGTGCGACATCGACGTCGTCGTCACGTCG
GCGGCTAGGGTGGTTGGCAGCACGGCCACGGATGCCTATGATGATCTTGAGGAGGCGGAGCTCCCCTGCAGCAGCATGGT
TCAGGAGGACATGTGCAAGCACGAGGACAACGTCGTTGGCGGCCACGCAACGGATACAGAGGACCCTTCCGATATCGGGT
TGGCAAAGCCGCACCGCTTGCGACCAAGGCAACCCAAGATGATGATGCATCCGATGGCCGCCGCTGTTCTCTCTTCTGTC
TTCTCATGTTTTGCAGATTTTTTCTAGACATATATTGACCTTTTTAGTTTGTATG-TGTAAT-CATTATTATATCATTTA
CCATATGGAAACTAGTAGCTCATCCTGTGCAAC----CTCTATAGATTTTGATATGACAAGGCAATTATTTTCTGGCTTC
TACATCAGCTTATACAAACAATCATCTTCATAGTTTTAAACATCTGCTAATTCGCGAACCAATCTGTGGTTGGATGGTTA
GAGGGACTGTGATATCCTCAGCCCACCAGGGTTCAATTTCTGGTGCTCGC------------------------------
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-----------GTGTATATGAGCGCTT-----------------------------------------------------
----------GAGTAGCAGATAGTACAAGGTAAGTGTGCAAAAGGCCGTGGTGGTTTCAGAAAATTTCACATGACACACT
TATACGTCAC-AAACTCTATTGCTAGATTGCCATCCAAATTGGCCAAAGAGCCCGAACTTCATCTCCATGTGGCCAGCTC
ATAGTAACACATCCGAGGCTGGTGAAT------------GTTTTCTCATGATTTGTTGATTTTTTTTTCTAGACAGTGCT
ATATTTATGTTTTTTCTTTCACCTCTTGCAAGACCACTAGAGGAAAGCCTTACTCCTCCCTAG-----------------
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--------------------------------------------------------------------------------
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-----------------------------------------CTCTGCCGATGATCCCGTGGATTCGTCTCCTCTTTGTCC
GTCGCTCCGACAGCCGGTAGCGGGGAGGAAAATCCTGGTTCTTAGCTCCGGCTAGTAG
>SNPs
--------------------------------------------S-----------------------------------
-----------------------S------S-----------------------------------------S-------
-------------------S--------S---------------------------------------------------
----S---------------------------------------------------------------------------
-----S---------------------------S--------------------S-------------------------
--------------------------------------------------------SS----------------------
-----------------S----------------------------S-S-----S-------------------------
-------S------S--------------------------------S-------------S------------S-----
--S-----------------------------------S--------S----------------------S---------
--S-----------------------------------------------------------------------------
------------------------------S--------------S------------------S---------S-----
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------S-----
----------S---------------------------------------------------------------------
-----------------------S-------------------S--------S------S---------SSS--------
--------------------------------------------------------------------------------
------------------------------------------------------------------S-------------
-------------------------S----S-------------------------------------------------
--------------------------------------------------------------------------------
------------------------S-------------------------------------------------------
----------------------------------------------------------------S---------------
--------S---S----------------------S--------------------------------------------
------------------------------------------------------------S-------------------
---------S----------------------------------------------S--------S--------------
-----------------------------------------------S--------------------S-----------
--------------------------S----S--------------------------S----------------S----
-------S--------SSS-S-------------------------------S----------S----S-----S-----
-----SSSSSS-------SS-----S-------S--S-S---S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS---S--------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS---------------------------S--S---------------------------------------
----------S---S----------------S----S------SSS--S---S----------S----------------
--------------------S------SSSSSSSSSSSS--------------------S----------S-------S-
--------------------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------------
--SSS----------------------------------------S------------
>forward_45
-------------------------TGCTACATGCTTCAACCGGT-----------------------------------
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>reverse_1465
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------------------------GGGCGTCTTCAAGTTCAACG------------------------------------
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----------------------------------------------------------
>forward_1093
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---------------------------------ATGTAGCTCCCGCCGGTATA---------------------------
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>reverse_2194
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---------------------------------GTCGATGACGAGGTGCCTAC---------------------------
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----------------------------------------------------------
