>input_sequence_64920
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---------ATGTTCGGCCGCCGGGTCGAGAGGCAGCGAGTCATCAACGTATTGATGCAGGACGGCCACCCGCCACCCGG
GGCTCCGACCGTGCTGCCCATCATCGGCCGTCGCAGAGTGGGCAAGAAGACGCTGGTGTGGAGCGTCTGCTCCGACGACC
GGATCCGCTCTCGCTTCCCTTCCATCCTCCACGTCGACGGATGCGAGATTCAGAGGATCGACCGTCGCAGGTTTGCTACT
A---CTGTGAGGACTTTGATCGTCGTTGAGGTCCGGTCGGACGTCGATGACAGGGAGTGGCACGAGTTCCTCTCGCTGCT
CCAAACTGTCACCGGCGCAGGGAGCAAGGTGGTGATCCTAAGCCGGCTCGAGAGGCTAGCGAGGTTTGGAACCGTGAACC
TCGTCCGGATCAACAGCTTCTCACGAGAGGAATACGGCTACCTTTTCAAGGTCCTCGCGTTCGGGAGCTCCGACCCGGCG
GACCACCCGCGGCTGGCGCTGATAGGGAAGGAGCTAGCGACGATGATGGAGGGGTCCCTCGTGCACCTCAACGTCTACTC
GAGCGTGCTGAGGAACAACCTGAACGTTCAGTTCTGGAGCCGCGCTCTGAAGCTGTACCGAACGGTGATGGAGGCTAACC
TGTCCGTCTTCGGTGACCGCCCGAGGGCTCTTCTTGACAGAGGCAGCACCGTTGATATCACCAGGTTCTCGGCGGCGGCG
---GCGGCGGCTACCCCGCTTCGATTTGTGCTGCTGATCGGTGGAAGGGGCTCTTCCGGG------CCAGGTGAGCTCCC
CAGGATGACATTTGGAGATATAATAGCGGGCTCTGTTGTTCTGCCGATGAAGTTTGAGCTGGTGTGGGAATCTCGGTTGC
CCCCTTACACTGTTATCTCCGGCACTTGTGTCGCAGAGGAGCCTCGACACTCGGTTTCACCCACAAGGAAACGTCGTAGA
TGA-----------------------------------------------------------------------------
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>chr7B_1_TraesCS7B01G249600
CCGTGCTAGCTTCAGAGAAAAGATTATGGGTATATTGCAGCAGGGTGATTTTGCAGAGAAGAGGTCTTCCAAGCTGAGCC
AAGTTGATTTCCTCTACTTGCTGTCTCTGTTCAACAAAGCAGGTATACATTTTTCGTGAGGGCCCGCTTAGTCAGCTAGC
TTGAGATGGATCTTGAAAAGCCATGTTTATTTTTTGGTTTATGTTATGTAAGTCCTATATAAGTTAAAAGTCATCTTTGT
GATATTGTGCTCTGAAATATTTTCGACACCGTCGATTTTGCCCCTGCTTTAGAA------AATAATTCCAAGGAAAGATG
TTCAAACCGTGTCGCCAATACATATATGCTCGCATTTTGTATGGTTTGATATTATTCCCCTTGTTGAGGGTGCGATGC--
--------------------------AGATGCAAGTTTAGTTGCTACTACTCCCTCCGTTTCTAAATATTTGTCTTTTAA
GACATTTCAAATGGATGACTACATACGGATGTATATTGACATAGTTTAGAGTGTAGATTTACTCATTTTGCTTCGTATGT
AGTCACTTGTTGGAATCTCTATAAGGACAAATATTTAGGAACGGAGTATTTCTGTATTTCGTATTCAGAATCAAGCTGAA
TTATCGAATCTCATATTTAGGAACGGAGTATTTCTGTATTTCGTATTCAGAATCAAGCTGAATTATCGAATCTCTCGTTT
ACTAGGAGTAGGTGCCAAGGTTATTAGGAGTAGGACACGTGGGCAAAAGATGAGGGGTCAAGGGTCAACACCGTTGAAGT
CGAAGCAATAATGGAGGATTACCTCCCG-----GTCTTGCATCTCTGCCACGTTGATAACCGCAATCGCGCCACGTCTTG
CCTCTCACACAGGATATACATCAACCATGCTCGTATGTATGACCGTCTTTGTCTCGCTGTGACGCACACC---TTCTCCA
TAGCAAGAAAAACCCATGGAGATTGCCGTCTCCGCGGTGGCAAGCGAGCGAGTCATCAACGTATGTATGACCGTTGT---
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----ACTTCATGTTCGGCCGCCGGGTCGAGAGGCAGCGAGTCATCAACGTATTGATGCAGGACGGCCACCCGCCACCCGG
GGCTCCGACCGTGCTGCCCATCATCGGCCGTCGCAGAGTGGGCAAGAAGACGCTGGTGTGGAGCGTCTGCTCCGACGACC
GGATCCGCTCTCGCTTCCCTTCCATCCTCCACGTCGACGGATGCGAGATTCAGAGGATCGACCGTCGCAGGTTTGCTACT
A---CTGTGAGGACTTTGATCGTCGTTGAGGTCCGGTCGGACGTCGATGACAGGGAGTGGCACGAGTTCCTCTCGCTGCT
CCAAACTGTCACCGGCGCAGGGAGCAAGGTGGTGATCCTAAGCCGGCTCGAGAGGCTAGCGAGGTTTGGAACCGTGAACC
TCGTCCGGATCAACAGCTTCTCACGAGAGGAATACGGCTACCTTTTCAAGGTCCTCGCGTTCGGGAGCTCCGACCCGGCG
GACCACCCGCGGCTGGCGCTGATAGGGAAGGAGCTAGCGACGATGATGGAGGGGTCCCTCGTGCACCTCAACGTCTACTC
GAGCGTGCTGAGGAACAACCTGAACGTTCAGTTCTGGAGCCGCGCTCTGAAGCTGTACCGAACGGTGATGGAGGCTAACC
TGTCCGTCTTCGGTGACCGCCCGAGGGCTCTTCTTGACAGAGGCAGCACCGTTGATATCACCAGGTTCTCGGCGGCGGCG
---GCGGCGGCTACCCCGCTTCGATTTGTGCTGCTGATCGGTGGAAGGGGCTCTTCCGGG------CCAGGTGAGCTCCC
CAGGATGACATTTGGAGATATAATAGCGGGCTCTGTTGTTCTGCCGATGAAGTTTGAGCTGGTGTGGGAATCTCGGTTGC
CCCCTTACACTGTTATCTCCGGCACTTGTGTCGCAGAGGAGCCTCGACACTCGGTTTCACCCACAAGGAAACGTCGTAGA
TGATGTATGCTTCTGCAGGCCATTACCGTGCCAGGATTTCTTCCTCCTGATGTCAACTTTTACTGAATGTATCACTTTCC
GTAGCATAGTATACTGCAAATAAGTGGCGCTATTCTTGCTCGTATCTGTTCGCCGGGCGATGCGGGCCTGCTCCTCCGCT
CAGCTCTCACCACGTTGGCCGCCTTCTCTTTGGCTAGCCGCTCGGACTCCTCGAGCCTGAGCCGCAATGCCTTGCAGTTC
TGCAGCGGGGACGGTGGGCATCTGTCTTGGACGTGGTCGACCGGCGGATGACATCGCGGGCGATCCCCTCCTCCGACTCG
GAAGGCAGGACAACCGACATTATCTGCACGGCCCGCAGATGTCCAGCTAGTTCCGACCCCGGACGAAGCACGGATGGTGC
GAGGTAAGGGATTACAGCGGGGGTCGGGGCGGCGCCCGTCCGTTTCGTCTCCGGCGGCCCTAGGATCATGGAGTAGTGGT
GGACCTCGGTCCTTGCGGACGGGAGGGATCTTTCTTCGTTTTTAATTGTTTTTATGAGTTCGTTTAGGGTTTGTGTCTTG
TTCAGGTAGACGAGACGGTGGCGACTCCTTGAT-ATGGAATTAGGTTCTCTCCGCATGGCC-CCGTTCTGCTAATGTGTC
TAGCGTCGTAAAAGGGTG--TGGAGGTGTGTCTCTCGCGGATCTCGCGA-GATTCGGTCGGTGCTTGTCTTTGATGAATC
CGT----------TCTTTGTTTGTTTAAGTTCATGTGTCTACATGTTGGATCCTTTCGATCTATACTTCACTTCATCGGC
AATGGTTGATGCTCTGGTGTGTTGGTCTAATGGGTTCTTAGCACAACGACTTCTTGACTGTCTATTGCAACAAGTTTGAC
CCGGCTTCGGTGAGAGAGGGATGATAGGGCTGATGACGGCGGCATGCTTTCGGCTTGCTCCAGTGCTTGTAATCGTCGCT
AGCTGGTCTACGAACATGGAT-TAATTATTTATGTGTTTTTTTATTGCCATAGCATGAC
>chr7D_1
CCGTGCTAGCTTCAAAGAAAAGATTATGGGCATATTGCAGCAGGGTGATTTTGCAGAGAAGAGGTCTTCCAAACTGAGCC
AAGTTGATTTCCTCTACTTGCTGTCTCTGTTCAACAAAGCAGGTATACATTTTTCATGAGGGCCCGCTTAGTCAGCTAGC
TTGAGATGGATCTTGAAAAGCCATGCTTATTTTTTGGTTTATGTTATGTAAGTTCTATATAAGTTA---GTCATCTATGT
GATATTGCGCTCTGAGATATTTTTGATACTGTCGATTTTGCCCAGGCTTTAGAGAAGTCGAATAATTCTAGGGAAAGATG
TTCAAACGGTGTTGTTTGTGCCTATATCCTCGCA-TTTGTATGGTTTGATATTATGCCTCTGTTGAGTGTGAAGCTGATA
GATGTGTTGACTGTTTCGGCTGCTCAAAATGCAGGTTTAGTTGCCATTTCAGTAC-------------------------
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---------------------------------------TTCGTATTCAGAATCGAGCTGAATTATCAAACCTCTCGTTT
GC------TAGGTGCCATGGTCATTTAGCAT--GACACGTGGGCAAAAGACGGGGGGTCAAGGGTCAGCACCGTTGAAGT
CGAAGCAATAATGGAGGAGTACCTCTCCTCCCAGTCTTGCGTCTCTGCCACGTTGATCACCGCAATCGCGCCACGTCTTG
CCTCTCAGGCAGGATATACATCAGTCATGCTCCTATGTGTGACCGTGTTCGTCTCGCTGTGACACACA-C---TTCTCCA
TAGCAAGAAAAACCCATGGAGATTGCCGTCTCCGCGGTGGCAAGCGAGCTCGCCGGCCGGCTCGTGTCTTTCCTCATCAG
CAAGTACAGAGGCCAGGCACGCCTGAGCAAGAAGGAGAACCTGGAGTCGCTGCGCCGGCTCCTCCTCAGAGTCCACACCG
TCGTCGAGGAGGCTGAGGGGCGATACATCACCAACTCACGGATGCTGCTGCAGCTCGAGACGCTCGCGGAGGCTATGTAC
CGGGGGTACGACGCCCTGGACACCCATGGCACCCTGGAGCAGATCGGAGCACGACCGGAGGTGAGCGGCTCCTCAGACTC
CATGGATTTCAGAGGTTTCCATAGCACAGCTGCCAGCAAAGAGGTGCAGACCGCACTGAGAGCTCTGGAGGCCGCCTCTT
CGGAGATGGCCGAGTTCGTCGCGCTTCTAGCAGGCTGCGAGCGTATGCTCCGCAGCCCGTACAGCTGCCACCTTCACATC
GACAACTTCATGTTTGGCCGCCGGGTCGAGAGGCAGCGGGTCATCAACGTCTTGATGCAGGACGGCCACCCTCCACCCGG
GGCTCTCGCCGTGCTGCCCATCATTGGCGGCCGCAGGGTGGGCAAGAAGACGCTGGTGTGGAGCGTCTGCTCCGACGACC
GGATCCGCTCTCGCTTCCCTTCCATCCTCCACGTCGACGGATGCGAGATTCAGATGATCGACCGTGGCAGGTTTACTCCT
CCTCCTGTGAGGACTTTGATCGTCGTCGAGTTCCGGTCGGACGTGGATGACAGGGAATGGCACGAGTTCCTCACGCTGCT
CCAAACTCTCACCGGCGCAGGGAGCAAGGTGGTGATCATAAGCCGGCTCGAGAGGCCAGCAAGGTTTGGAACCGTGAACC
CCGTCCGGATCAACAGCTTGTCAAGAGAGGAATACGGCTACCTTTTCAAGGTCCTCGCCTTCGGGAGCTCCGACCCGGCG
GACCACCCGCGGCTGGCGCTGATAGGGAAGGAGCTGGCGACGATGATGGAGGGGTCACTCGTGCACCTCAACGTCTACTC
AAGCGTGCTGAGGAACAACCTGAACGTTCAGTTCTGGAGCCGCGCTCTGAGGCTGTACCGAACGGTGATGGAGGCTAACC
TGTCCGTCTTCGGTGAGCACCCGAGAGCTCTTCTTGACAGAGGCAGCACCGTAGATATCACCAGGTTCTCGCCGTCGTCG
TCAGCGGCGGCTACCCCGCTTCGATTTGTGCTGCTGATCGGTGGAAGGGGCTCTTCCGGG------CCAGGTGAGCTCCC
CAGTATGACATTTGGAGATATAATAGCAGGCTCTGTTGTTCTGCCGATGAAGTTCGAGCTGGTGTGGGAATCACGGTTGC
CCCCTTACACCGTTATCTCCGGCACTTGTGTCGCACAGAAGCCTCAACACTCGACTTCACCGAGGAAGAAACGCCGTACA
TAATGTATGTTTCTGTAGGCCATTACTGTGTCAGGACATCTGCCTCGTGATGTGAACTTCAACTGAATGTATCACTTTCC
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>chr7A_690
AGGAAG--------------------------------------------------------------------------
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--------TAGCTGCCCAGGTCATTAGGAGTA-GACACGTGGGCAAAATATGGGGGGTCAAGGGTCAACGTCGTTGAAGT
CGAAGCAATAATAGAGGATTGCTTCCCAGCCTTG--------------CACGTCGATCACCACAATCGCGCCACGTCTTG
CCTCTCTCACGCATG-------------------ATATGTGAGCGTGTTCGTCTCGCTGTGACACACA-CACCTTCTCCG
AATCAAGAAAAACTCATGGAGATTGCCGTCTCCGCGGTGGCAAGCGAGCTAGCCGGCCGGCTCGTGTCTTTCCTCATCAG
CAAGTACAGAGGCCAGGCACGCCCGAACAAGAAGGAGAACCTGGAGTCCCTCCGCCGG---CTCCTCAGAGTCCACACCA
TCGTCGAGGAGGCCGAGGGGCGATACATCACCAACTCACGGATGCTGCTGCAGCTCAAGACGCTCACGGAAGCCATGTAT
CAGGGGTACGACGCCCTGGACACCCATGGCCCCCTGGAGCAGATCGGAGCACAACCGGAGGTGAGCGGCTCCTCACACTC
CATGGATTTCAGAAGATTCAGTAGCACACCTGCCAGCCAAGAGGTGCAGACCGCGCTGAGAGCTCTGGAGACCGCCTCTG
CGGAGATGGCCGAGTTCATCGCGCTCCTAGCAGGCTGCGAGGGCATGCTCCGCAGCCCGTACAGCTGCTACCTTCACATC
GACAACTTCATGTTCGGGCGCCGGGTCGAGAGGCAGCGGGTCATCAACGTCTTGATGCAGGACGGCCAGCCGCCGCCCGG
GGCTCCGACCGTGCTGCCCATCATTGGCGGCCGCAGGGTGGGCAAGAAGACGCTGGTGTGGAGCGTCTGCTCCGACGACC
GGATCCGCTCTCGCTTCCCTTCCATCGTCCACGTCGACGGATGCGAGATTCAGAGCATCGACCGT---------------
----------GGACTTTGATCGTCGTCGAGTTCCGGTCGGACGTGGATGGCAGCGAATGGCGCGGGTTCCACTCGCTGCT
CCGAGCTCTCACCGGCGCAGGGAGCAAGGTGGTGATCATAAGCCGGCTCGAGAGGCTAGCAAGGTTTGGAACCGTGAACC
TCGTCCGGATCAACAGCTTCTCACGAGAGGAATACGGCTACCTTTTCAAGGTCCTCGCGTTCGGGAGCTCCGACCCGGCG
GACCACCCGCGGCTGGCCCTGATAGGGAAGGAGCTGGCGGCGATGATGGAGGGGTCGCTCGTGCATCTGAACGTCTACTC
AAGCATGCTGAGGAACAACCTGAATGTCCAGTTCTGGAGCCGCGTTCTGAAGCTGTACAGAACGGTCATGGAGGCGAACC
TGTCCGTCTTCGGTGAGCATCCGAGAGCTCTTCTTGACAAAGGCAGCACCGTGGACATCACCAGGTTTTCGCCGTCGGCG
---GCGGCGGCTGCCCCGCTTCGGTTCATGTTGCTGATCGGTGGAAGGGGCTCTTCCGGACCAGGACCAGGTGAGTTCCC
CAGGATGACATTTGGAGATATAATATCAGGCTCTGTTGTTCTGCCCATGAAGTTTGAGCTGGTGTGGGAGTCACGGTTGC
CCCCGTACACCGTTATTTCTGGCACCTGTGTCGCAGAGAAGCCTCAACACTCGGCTTCACCGAGGAAGAAACGCCGTACA
TAATGTATGTTTCTGACGGCCATTAATGTGTCAGGACATCTGCCTCGTGATGT---------------------------
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>chr2D_2364
CGGGCGC-------------------------------------------------------------------------
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-----------------------------CGTCGCCGGTCCGCCTCATCTCCGATGGCCCTAGGGCCATGGAGGTGCGGT
GGACCCTGGCCCTTGGTGGGGGGAGGCATGTTGCTCCGTTTCTTGGTGTTTTCGTGAGTTTGTTTAGAATTTGTGTCCTA
CTCAGAAAGATGAGGCGGTGGCAACTCCTTGGCGATGAAATAAAGTTCTTCCCACTCGGCCTCCGTACTGGTGATGTGTC
TAGCGTCATCGGAAGACGCATGGAGGTGTGTTTCCGGCGGATCTCGCGGGGATTCGTTCGGTGGTGGTCTTCAGTAGATC
CGCTTGGATTCAGTCCTTGTTCGTCTTCGTTCGTGTGTATACACGTTGGATTCTTTCGATCTATACTTCACTTCATCGGC
GACGGTTGCTGTTCTGGTGCGCTGGTCCTGTGGGGTCTTAGCACAATGACTTCGCGACTGTCTACTACAATAAGTTTGGG
CCAGCTCCAGTGAAGGA----------GGGTGATGATGGTGACGCGCCTTCGGCTTGCTCCAGTGTTTGTAGTCATCGTT
AGGTGGTCTACGAACATGGATGTAATTTTTTTTGTTCTTT-------------------
>SNPs
--------------S---------------S-----------------------------------------S-------
-------------------------------------------------------S------------------------
-------------------------S---------------------------S------------SSS-------S---
-------S-------S-------S--S--S-------------SS--------S--------------S-S---------
-------S----S-SSSS-S-S-----S------S--------------------S--S--SS-SSSS-SSSS-S--S--
---------------------------S-----S----------S-S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S------------S--S---------
S-SSSSSS-------------S----------S-------------------S---------------------------
---------------------------S------------S----------------S----------------------
-----------------------SS-------S-----S-------S--S-------------S----S-----------
-------------------------------------------------S--S-SS-SSSS-SSSSSSSSS-S-SS----
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--------------------------------------S-----------S-----------------------------
------------------------S---S-S-----S-------------------------------------------
-----------------------------------------------------------------S--------S--S--
S-------------------------S---S-------------S-----------S-----------------------
-------S-----------------------------S----------------------S-------------------
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-----------------------------------S--------------------S-----------------------
S-------------------------------------------------------------------------------
----------------S-S------S--------------------------S------------------S--S-----
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---------------------------S--------------------------------------------S-------
----------S---------------------------S------S--------S------S-SS-S------S----S-
-S-------S-----S----------S---S-----SS---S----S------S-----SS-------------------
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S----S-----SS--S------SS---------SS-------SS-S---
-----SS--S-----SS-SS------S--S--S--S-----S-SSS------SS------S------SS--------S-S
S----SS---S---S-------S--------SS----S---S-S-----SS--S-SS---------S---S-S-------
-------S-SSS-S-SS--------------S--SS------------S-------S------S-S-----SSS-SS---
--S------------S-----S--S-SS----S-----S----S-------S----------------------------
S-S-----S--S-------S-S-----SSS----S-----------S------SS---------S-S---S-------SS
--S---S-S----SS--SSSSSSSSSS--S------S--S-S-SS--S-----------------S-----S--S---S-
--S------------------------S---S---SS---SSSSSSSSSSSSSSSSSSS
>forward_336
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----------------------------------------------------------------------------GATG
TTCAAACCGTGTCGCC----------------------------------------------------------------
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>reverse_2722
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-AAGGCAGGACAACCGACATT-----------------------------------------------------------
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