>input_sequence_64907
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-------------------------------------------------ATGCACAAGCGTTCCAAATCCTGCGAGCCGT
CCAGGAACGAGCAGCGCGGCGGCGTCCATGGGCCCACGGCCTCCGACGACTCGATCACGGGCAAGGTGGCGTCGTCCTCC
TCGGCGACGGTGCAGTGCTCCACGATGACGGTGTACCTTGTCAGGATCAACGGCACCGAGCACCTCGTCACCGCCGTCTG
GAACAAGAACATCATCAACCAGTCCTTCACCATCACCATCGATCGCCACGGCGACGGCACCGGCAGCGGCAGCGGCGACG
ACGGGACGCTCAGCCTCAAGGTGGAGCTGAAGCCGTGGCCGTTCTGGAGCAAGAAGGGCCTCAAGAGCTTCTTCCTCGAC
GGCCACCGCCTGGACGTCTTCTGGGACCTCCGGTCGGCCAAGTTCCCGGCGAGCAGCCCGGAGCCGGCCAGCGGGTACTT
CGTCGCGCTGGTGAGCCAGGAGCAGGTCGTGCTCACGCTCGGCGACCTCAAGAAGGACGCCTACAAGCGGAGCAAGTGCC
GGCCGTCGCTGGAGGACGCCGTGCCGTTGTGCCGCCGGGAGACCGTCTTCGGCAGGCGCAGCTTCGTGGCGCGGGCGTGG
CTCGACGCCAGCAGGAAGGATCGCGACATTGTCATCGAGGTCTCGCTAGCCGGGCCAAGGGAACCGGAAATGGCGATCAC
GGTGGACGGCCGCGCCCTGGTGCAGGTCAAGAACCTTCAGTGGAAGTTCCGGGGCAACGAGACGGTGCTCGTCGACCAGT
CGCCGGTGCAGGTGCTCTGGGATGTGCACGACTGGATCTTCGCCGGCCCGGGCTCGCAGGCAGTCTTCGCCTTCAAGCCA
GGTGCTCCGCCGGAGGTCGACAGCGACGAGGCCGGGTTGGAGAGCGGGAGTGGCATTCCGGGCGACCCGGCGGATTACAG
CTTCTTTCTTCATGCATGGAAGACGGACTGA-------------------------------------------------
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---------------------------------------------------
>chr6A_1_TraesCS6A01G161700
CACTGGGCCGGCATCACATCTGGAGATTGACAAGAGTCACCACAGGCGACTCCATAGTTAATGGAAACGTCTTCTCCCAC
ACAACGAAAAATCAAAAAAATACGAGCACCAATGCAAAACCC--TGGTGGGCTGGTTCCATCACAAAGAACCTAACCCAT
GAAGATACGGTTTTGGCATGCTCTCTCACGATGCCAAACAATCACATACACTACTCTATGCTTTCTGTTTTTTTGTTGTT
GCAGGGAACACTATGTTTTGTTGTTGGCATCATGGTGCAGAAAAAGATTGTCCCCGTTTCGAAAAAAGAAGAAGATTGTT
CAACTCCATACCACTTCCCAAATGACACTCACAGAAGAAGGGGCTCTCACTCCCTCTGCATGGCTACATGGGCACCGACC
ATTTCTTAGCTCGTGTTCTCTCCCTGTTCTATTTTCATGGCGCGTCCAGTGCATATACCACCACCACCACCACATAAATA
GTGCCCAGCTGACAACGACGCGCGATCGTTGGCCGTCAAAATCTTTTTTGGCAAAACCGTCCAATTATTCTTCGTTCCCG
TCAACCCCCTTTCTCCATAGCCTCCGCCCAAGCCGGAGTTTCTCCATTTT-CCTCCCACGATTGATCAATTTCGTGTTCT
CGAGACCAGATAGGCGCCCGCATCCGACTGCGAACGCCAAGCCACGTACGTGCATTTTTGTT-TTGTTTTGTTCGATTTA
CGATGCCCTTGTCGCTCTTGCATGCTGCCCGTAAAAATCAATCGCCGAATTTTTTGGTACTATTTCGTTGTCCGCTTGAT
TGTTATATTTTCTATATTTGTTTAATTTGGCATCCCACACGTACATGCAGCCCATGACGATCGAGCATGGCGGAGCCTCC
TTCTTCTTGATCGATCGCCATTGCTGTTGACGCGACAAGCGGCGCGTTCCACGCCGATGTGTTTCCTCTTGTCCTAGCTA
GCATA----GGGAGAGGGGGC-CGATCTGATCTGATCTGTTTCGGCGAGATGCACAAGCGTTCCAAATCCTGCGAGCCGT
CCAGGAACGAGCAGCGCGGCGGCGTCCATGGGCCCACGGCCTCCGACGACTCGATCACGGGCAAGGTGGCGTCGTCCTCC
TCGGCGACGGTGCAGTGCTCCACGATGACGGTGTACCTTGTCAGGATCAACGGCACCGAGCACCTCGTCACCGCCGTCTG
GAACAAGAACATCATCAACCAGTCCTTCACCATCACCATCGATCGCCACGGCGACGGCACCGGCAGCGGCAGCGGCGACG
ACGGGACGCTCAGCCTCAAGGTGGAGCTGAAGCCGTGGCCGTTCTGGAGCAAGAAGGGCCTCAAGAGCTTCTTCCTCGAC
GGCCACCGCCTGGACGTCTTCTGGGACCTCCGGTCGGCCAAGTTCCCGGCGAGCAGCCCGGAGCCGGCCAGCGGGTACTT
CGTCGCGCTGGTGAGCCAGGAGCAGGTCGTGCTCACGCTCGGCGACCTCAAGAAGGACGCCTACAAGCGGAGCAAGTGCC
GGCCGTCGCTGGAGGACGCCGTGCCGTTGTGCCGCCGGGAGACCGTCTTCGGCAGGCGCAGCTTCGTGGCGCGGGCGTGG
CTCGACGCCAGCAGGAAGGATCGCGACATTGTCATCGAGGTCTCGCTAGCCGGGCCAAGGGAACCGGAAATGGCGATCAC
GGTGGACGGCCGCGCCCTGGTGCAGGTCAAGAACCTTCAGTGGAAGTTCCGGGGCAACGAGACGGTGCTCGTCGACCAGT
CGCCGGTGCAGGTGCTCTGGGATGTGCACGACTGGATCTTCGCCGGCCCGGGCTCGCAGGCAGTCTTCGCCTTCAAGCCA
GGTGCTCCGCCGGAGGTCGACAGCGACGAGGCCGGGTTGGAGAGCGGGAGTGGCATTCCGGGCGACCCGGCGGATTACAG
CTTCTTTCTTCATGCATGGAAGACGGACTGAGGCTGGGACATTCATCTTCTTTTACTTTCATGTACTGCCGAAACGGATT
CGTTTATATGAAAACGGATAGCTTATTCAAAAGGAACTTCAAATCAGTAGGCTGGATGAGGATATGCTAAGAATATTTTC
CTGGTAAGTATTGGGGCAAAGCAGAACAGGATGTGACATATATGGAACATTTCCTTGTAGCTACAGGTTCGCTATAAAAA
TCGCAAGGCGTTTCAAATCAAACACCAAAAGGCCGTGATTTA--------------------------------------
--------------------------------------------------------------------------------
AAATGATTCACAATACATACCACCGACACAAACAAAAGGTATCATCATCACATTCATAAAAATGGTGTCAGACATTTCTT
CCGCCCAGTTGTAGTATCAACAGGTGATCCGTCAAGAAAGAGATATGTGATACTGAAAGAAAGTCTTATTCTAGAACACC
AACGTAGCAACTAAATATCTAGTTCGCATCTCGCTTCCGTTACCTGTCACAGAATAT---------------------AG
ATCCTCTGACATCGAATGCTCCATCATGCTAACAAAATCAGAA-AGAGAAAAAAGATTTGTGATGTCCAGAATCTGATTC
TTCACTCCATCACAGCAACACCACCAGCTGCCTTGATCTTTGCGATGATCGCTTCCGCTTCCTCCTTCGTGAGTGACTGC
TTTAGAATGACAGGGGCCTTCTCCACCAGCTCCTTTGCATCCTTCAGCCCCAAATCAGTAAACGTTCTGATCTCCTTGAT
AATCTTAATCTTTGCAGCAGCGTCAAATTTCTCCAACTTGACATCGAATACTAACTTCTCAGCCTTTTTCTCTTCAGACT
TCGCGGCGCCAGCACCTGCACCACCTTGAGAACCCATACTAAAACCCTGGCCAGAAATTGCCTGTGGTGCTGGCTGGTTC
AGCCTGAGAAGGAGAGCTGGAGCTATCTGCTTGATCTCCTCAGGAGGAAGAGCGGCAATGCGGTCCGCTAGACCCACAAC
TTTCTCTGATGCTGGTGGCATAGGCCCATATGGGTCATAGACTTCAGGATA
>chr6D_2
-ACTGGGCCGGCATCACATCTTAAAATTGGCAAG--TCACCATAGGCGACTCTATAGTTGACGGGAACGTCTTCTTTCAC
ATAACGAAAAATCAAAAAAATAAGAGCACCAATGCAAACCCTGGTGGAGGGCTAGTTCCGTCACAAAGAACCTAACCCAT
GAAGATACGATTTTAGCATGATTTATCACGATGCCAAACAATCACATACACTACTCTATGTTTTCTGTTTTTT-------
GCAGGGAACACTATGTTTTGTTGTTGGCGTCATGGTGCAGAAGAAGATTGTTCCCGTTTCGAAAAAAGAAGAAGATTGTT
CAACTTCATACCACTTCCCAAATGACACTCACAGAAGAAGGGGCTCTCACTCCCTCTGCATGGCTACATGGGCACCGACC
ATTTCTTAGCTCGTGTTCTCTCCCTGTTCTATTTTCATGGCGCATCCAGTGCAT-----ACCACCACCACCACATAAATA
GTGCCCAGCTGACAACGACGCGCGATCGTTGGCCGTCAAAATCTTTTTGGGCAAAACCGTCCAATTATTCTTCGTTCCCG
TCAACCCCCTTTCTCCATAGCCTCCGCCCAAGCCGGAGTTTC--CATTTT-CCTCCCACGATCGATCAAATTCGTGTTCT
CGAGACCAGATAGGCGCAGGCATCCGGCTGCGAACGCCAAGCCACGTACGTACATTTTTGTT-TTGTTTTGTTCGATTTA
CGATGCCCTTGTCGCTCTTGCATGCTGCCCATAAAAATCAATCGCCGAATTTT-TGGTACTATTTCGTTGTCCCCTTGAT
TGTTATGTTTTCTATATTTGTTTAATTTGGCATCCCACACGTACATGCAGCCCATGACGATCGAGCATGGCGGAGCCTCC
TTCTTCTTGATCGATCGCCATTGCTGTTGACGCGACAAGCGGCGGGTTCCACGCCGATGTGTTTGCTCTCGTTGTAGCTA
GCATACATAGGGAGAGGGGGC-CGATCTGATCTGATCTGTTTCGGCGAGATGCACAAGCGTTCCAAATCCTGCGAGCCGT
CCAGGAACGAGCAGCGCGGCGGCGTCCATGGGGCCACGGCCTCCGACGACTCCATCACGGGCAAGGTGGCGTCGTCGTCC
TCGGCGACGGCGCAGTGCTCCACGATGACGGTGTACCTCGTCAGGATCAACGGCACCGAGCACCTCGTCACCGCCGTCTG
GAACAAGAACATCATCAACCAGTCCTTCACCATCACCATCGATCGCCACGGCGACGGCACCGGCAGCGGTGGCGGCGACG
ACGGGGCGCTCAGCCTCAAGGTGGAGCTGAAGCCGTGGCCGTTCTGGAGCAAGAAGGGCCTCAAGAGCTTCTTCCTCGAC
GGCCACCGCCTGGACGTCTTCTGGGACCTCCGGTCGGCCAAGTTCCCGGCGAGCAGCCCGGAGCCGGCCAGCGGCTACTT
CGTCGCGCTGGTGAGCCAGGAGCAGGTCGTGCTCACGCTCGGCGACCTCAAGAAGGACGCGTACAAGCGGAGCAAGTGCC
GGCCGTCGCTGGAGGACGCCGTGCCGTTGTGCCGCCGGGAGACCGTCTTCGGCAGGCGCAGCTTCGTGGCGCGGGGGTGG
CTCGACACCAGCAGGAAAGATCACGACATTGTCATCGAGGCCTCGCTAGCCGGGCCAAGGGAACCGGAAATGGCGATCAC
GGTGGACGGCCGCGCCCTGGTGCAGGTCAAGAACCTCCAGTGGAAGTTCCGGGGCAACGAGACGGTGCTCGTCGACCAGT
CGCCGGTGCAGGTGCTCTGGGACGTGCACGACTGGATCTTCGCCGGCCCGGGTTCGCAGGCGGTCTTCGCCTTCAAGCCG
GGTGCTCCGCCGGAGGTCAACAGCGACGAGGCCGGGTTGGAGAGCGGGAGTGGCATTCCCGGCGACCCGGGGGATTACAG
CTTCTTTCTTCATGCATGGAAGACGGACTGAGGCTGGGACATTCATCTTCTTTTACTTTCATGTACGGGCGAAACGGATT
CGTTTATATGAAACT-GATAGCTTATTCGAAAGGAACTTCAAATCACTAGGCTGAATGAGGATATGCTATAAGAAACTTC
CTGGTAGTTTTCAA-GCAAAGCAAAACAGGACGTGACCTATATGGATCATTTACTTCTAGTTACAGGTTCGCTATAAAAA
TTGCAAGGCATTTCAAATCAAACACCAAAAGGACGTGATTTAGAATGATCAGGAATGTTTGGTAAAGAAAATTGGCATCC
TC---ACAGCATAATTTGCCATCTTGGTTGTTCGATTTGCCATGCTCAAAAATCTGGCCTTCGATCTGTAGTAAAATCCT
AAATGATTCACAATACATACATCCATGACAAACAAAAGGCATCAGCATCACATTCATAAAAC-GGCGTCTGACATTTC-T
TCACCCAGTTCCAGTATCAACAGTGTTCCATCAGGAA---AGATATGCGATACTGAAAGAAAGTCTTATTCTAGAACGCC
AACGTAGCAACTAAATATCTAGTTCGCATCTCGCTTTCGTTACCTGTCACAAGTAAACCATTTCCTCCAAAAGTATAGAG
ATCCTCAGACCTGGAATGCTCCATCATGCTAACAAAATCAGAAGAAAGAAATAAGGATTGCAGTGTTCAGAATTTGATCC
TTCACTCCATCACAGCAACACCACCAGCTGCCTTGATCTTTGCGATGATTGCTTCCGCTTCCTCCTTCGTGAGTGACTGC
TTCAGAATAACAGGGGCCTTCTCCACCAACTCCTTCGCATCCTTCAGCCCCAGATCGGTAAATGTTCTGATCTCCTTGAT
AATCTTGATCTTTGCAGCAGCCTCAAATTTCTCCAACTTGACATCGAATACTAGCTTCTCAGCCTTTTTCTCTTCAGACT
TTGCGGCGCCAGCCCCTGCACCACCTTGAGAACCCATACTAAAACCCTGGCCAGAAATTGCCTGTGGTGCTGGCTGGTTC
AGTCTGAGAAGGAGAGCTGGAGCTATCTGCTTGATCTCCTCAGGAGGAAGAGCGGCAATGCGGTCCGCTAGACCCACAAC
TTTCTCTGATGCTGGTGGCATAGGCCCATATGGGTCATAGACTTCAGGATA
>chr6B_151
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------------------------------------------------------------------------TAACCCAT
GAAGATACGATTTTGGCATCATCTATCACGACGCCAAACAATCACATACAATACTTTATGTTTTCTGTTTATTGCAGGGA
------AACACTATGTTTTGTTGTTGGCCTCATGGTGCAGAAGAAGATTGTTCCCGTTTCGAGAAC---AGAAGATTGTT
CAACTCCATACCACTTCCCAAATGACACTCACAGAAGAAGGGGCTCTCACTCCCTCTGCATGGCTACATGGGCACCGACC
ATTTCTTAGCTCGTGTTCTCTCCCTGTTCTATTTTCATGGCGCACCTAGTGCAT-----ACCACCACCACCATATAAATA
GTGCCCAGCTGACAACGACGCGCGATCGTTGGCCGTCAAAATCTTTTTGGGCAAAACCGTCCAATTATTCTTCGTTCCCG
TCAACCCCCTTTCTCCATCGCCTCCGCCCAAGCCGGAGTTTC--CATTTTTCCTCGCACGATTGA---------TGTTCT
CGAGACCAGATAGGTGCACGCATCCGACTGCAAACGCCAAGGCACGTACGAACATTTCTGTTCTTGTGTTGTTCGATTTA
CGATGCCCTTATCGCTCTTGCATGCAGCCCATAAGAATCAATCGCCGATTTTTGG-----TATTTCGTTGTCCCCTTGAT
TATTATTATTTCTCTTTGTTTATAATTTGGTCTTTGACGAT--CATGCAGCCCATGACGATCGAGCATGGCGGAGCTTAC
TTCTTCTTGATCGACCGCCATTGCTGTTGACGCGACAAGCGGCGCGTTCCACGCCGATGTGTTTCCTCTTGTCCTAGCTA
GCGTA----GGGAGAGGGGGCGCGATCTGATCTGATCTGTTTCGGCGAGATGCACAAGCGTTCCAAATCCTGCGAGCCGT
CCAGGAACGAGCAGCGCGGCGGCGTCCATGGGGCCACGGCCTCCGACGACTCGATCACGGGAAAGGTGGCGTCGTCGTCC
TCGGCGACGGCGCAGTGCTCCACGATGACGGTGTACCTCGTCAGGATCAACGGCACCGAGCACCTCGTCACCGCCGTCTG
GAACAAGAACATCATCAACCAGTCCTTCACCATCACTATCGATCGCCACGGCGACGGCGCCG---GCGGCGGGGCCGACG
ACGGAACGCTCAGCCTCAAGGTGGAGCTGAAGCCGTGGCCGTTCTGGAGCAAGAAGGGTCTCAAGAGCTTCTTCCTCGAC
GGCCACCGCCTGGACATCTTCTGGGACCTCCGGTCGGCCAAGTTCCCGGCGAGCAGCCCGGAGCCGGCTAGCGGCTACTT
CGTCGCGCTGGTGAGCCAGGAGCAGGTGGTGCTCACGCTCGGCGACCTCAAGAAGGACGCGTACAAGCGGAGCAAGTGCC
GGCCGTCGCTGGAGGACGCCGTGCCGTTGTGCCGCCGGGAGACCGTCTTCGGCAGGCGAAGCTTCGTGGCGCGGGCGTGG
CTCGACAACAGCAGGAAAGATCACGACATTGTCATCGAGGCCTCGCTAGCCGGGCCAAGGGAACCAGAAATGGCGATCAC
GGTGGACGGCCGCGCCCTGGTGCAGGTCAAGAACCTTCAGTGGAAGTTCCGGGGCAACCAGACGGTGCTCGTCGACCAGT
CGCCGGTGCAGGTGCTCTGGGACGTGCACGACTGGATCTTCGCCGGCCCGGGCTCCCAGGCGGTCTTCGCCTTCAAGCCG
GGTGCTCCGCCGGAGGTCGACAGCGACGAGGCCGGGTTGGAGAGCGGGAGAGGCATTCCCGGTGACCCGGCGGATTACAG
CTTCTTTCTTCATGCATGGAAGACGGACTGAGGCTGGGACATTCATCTTCTTTTACTTTCATGTACGGGCGAAATGGATT
CGTTTATATGAAACT-GATAGCTTATTCAAAAGGAACTTCAATTCACTAGGCTGAATGAGGATATGCTATAAGAAACTTC
CTGGTAGTTTTCAA-GCAAAGCAAAACAGGACGTGACCTATATGGATCATTTACTTCTAATTACAGGTTCGGCAAATAAA
TTGCAAGCCGTTTCAAATCAAACACCAAAAGGACGTGATTTAAAATGATCGGGAATGTTTGGCAAAGAAAATTGACATCC
TCGCAACAACATAATTTGCCATCTTGGGCATTCCATTTGCCATGCTAAAAAATTTGGCATTTGATCTGTAGCAAAATCCA
AAATGATTCACAATACATACATCCAAGACAAACAAAAGGCATCAGCATCACATTCATAAAAAACAGCGTCGACATTTCTT
TCACCCAGTTCCAGTATCAACAGTGTTCCGTCAGGAA---AGATATGTGATACTGAAAGAAAGTCTTATTCTAGAACGCC
AACATAGCAACTAAATATCTAGTTCGCATCTCCCTTTCGTTACCTGTCACAAGTAAACCATTTCCTCCAAAAGTATAGAG
ATTCTCAGACCTCGAATGCTCCATCATGCTAACAAAATCAGAAGAAAGAAATAAGGATTGCAATGTCTGGAATTTGATCC
TTTACTCCATCACAGCAACACCACCAGCTGCCTTGATCTTTGCGATGATTGCTTCCGCTTCCTCCTTCGTGAGTGACTGC
TTCAGAATGACAGGGGCCTTCTCCACCAGCTCCTTTGCATCCTTCAGCCCCAAATCGGTAAACGTTCTGATCTCCTTGAT
AATCTTAATCTTTGCAGCAGCCTCAAATTTCTCCAACTTGACATCAAATACCAACTTCTCAGCCTTTTTCTCTTCAGACT
TTGCGGCACCAGCCCCTGCACCACCTTGAGAACCCATACTAAAACCCTGGCCAGAAATTGCCTGTGGTGCTGGCTGGTTT
AGCCTGAGAAGGAGAGCTGGAGCTATCTGCTTGATCTCCTCAGGAGGAAGAGCGGCAATGCGGTCCGCTAGACCCACAAC
CTTCTCTGATGCTGGTGGCATAGGCCCATATGGGTCATAGACTTCAGGATA
>SNPs
S--------------------SS-S----S----SS------S---------S------S-S--S----------SS---
-S--------------------S---------------S--S-----S-----S-----S--------------------
---------S----------S---S-----------------------------------S------------SSSS-SS
----------------------------S-------------S--------S----------------------------
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-------------------------------------------S----------SSSSS---------------------
------------------------------------------------S-------------------------------
------------------------------------------SS-------------------------S----------
-----------------S---------------------------------S----------------------------
------------------------------S----------------------S-------------------S------
------S-------------------------------------------------------------------------
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--------------------------------S-------------------------------------------S---
----------S---------------------------S-----------------------------------------
----------------------------------------------------------------------S---------
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--------------------------------------------------------------------------S-----
------------------------------------------------------------S-------------------
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------S----------S----S-----------------S---------------------------------------
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----------------------S--------------------------------------S-----------------S
-----------------------------------------------------------S--------------------
------------------------------------------------------------------S-S-----------
-------------SSS------------------------------S-------S--------------SS-SS-SS---
------SS-S-SSSS--------S-------S-----S--------S-----S---S---S-------------------
-S------------------------------S-----------------------------------------------
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--------------------SS--S-S------------S----S-----------------S--S---S----------
S-S-------SS-----------SSSSS-SSSSSSS-SSS-------------------------------------S--
------------------------------------S--------------SSSS-S-----------------------
------S---S----------------------------------S-----S---SS---SS-----------S----S-
-------------------------------------------------S------------------------------
--S-----------------------------------------------------S-----------------------
---------------------S----------------------------------------------------------
-S-----------S------------------------------------------------------------------
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---------------------------------------------------
>forward_128
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----------------------------CACCAATGCAAAACCCTGGT--------------------------------
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>reverse_1783
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----------------------TGTGCACGACTGGATCTTCG--------------------------------------
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>forward_1159
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-------------------CCACGATGACGGTGTACCTT-----------------------------------------
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>reverse_2894
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-------------ACCTGCACCACCTTGAGAAC-----------------------------------------------
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---------------------------------------------------
