>input_sequence_64884
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--------------------------------------------------------ATGGCAGGCCTCGACCTTGGCACC
GCCGCGACGCGCTACGTGCACCAGTTCCACCACCTCCACCCGGACCTCCAGCTGCAGCAGAACAGCTACGCCAAGCAGCA
GCACGAGCCCGCCGACGACGACAACAACGGCAACGGCAACGGCGGCAACTACGGCGCCCAGTACGGCGAGAACAACGACG
GCGGCTCCTCATCCTCCGGCCCCGCCGGTGATGGCGCGGGCGGCGGCGGCGGGGGCGGTCCTGGGGACATGGTGGCGCGC
CGGCCACGGGGGCGCCCCCCGGGCTCGAAGAACAAGCCCAAGCCGCCGGTGATCATCACGCGGGAGAGCGCCAACACGCT
GCGCGCCCACATCCTGGAGGTCGGGAGCGGCTGCGACGTGTTTGAGTGCATCTCCACGTACGCGTGCCGACGGCAGCGCG
GCGTGTGCGTGCTGAGCGGCAGCGGCATCGTGACCAACGTGACGCTGCGGCAGCCGTCGGCCCCCGCGGGCGCCGTCGTG
ACCCTGCACGGCAGGTTCGAGATCCTGTCGCTCTCGGGCTCCTTCCTGCCCCCGCCGGCTCCCCCTGGCGCCACCAGCCT
CACCATATTCCTCGCCGGGGGGCAGGGGCAGGTCGTCGGCGGCAACGTCGTGGGCGCGCTCTACGCCGCGGGCCCGGTCA
TCGTCATCGCGGCGTCCTTCGCTAACGTCGCCTACGAGCGCCTCCCGCTGGAGGACGAGGAGGCGCCGCCTGCAACGGCA
GGCATGCAGATGCAGCAGCCCGGCGACGCTGAGGCA------GCGGCCGGCATGGGCGGCGTCCCGTTCCCTCCCGACCC
GTCGGCTGCCGGCCTGCCCTTCTTCAACCAGCTGCCTCTCAACAACATGACCGGCGGTCCCGGCTCGCAGCTCCCGCCCG
GTGCCGACGGCCACGGCTGGGCCGGCGGACGGCCACAGTTCTGA------------------------------------
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>chr2B_1_TraesCS2B01G470600
GTTCCAACCACATTCGAAAAATGTAGCATATACAAAGACTACA-----AAGGTCGATTTGAACCACCAAACTCGTGTAGT
GCCGCGGCATAGTTTGTGCACTCGATGAGGGCCAGATCCAACCGCGGAGCAAAGGATCCTAGGGCAAAATGCGCTGGAAG
TGGGACCCACGCGTAGGGGCGCGGTATGAACAACCTCTACCCTAAGTCGTATCAATCCCGGATTAGTGGTCGTTAACCTC
AGGTTTAAGCACCTAACCCTGGTTAAGCGGCATAAAGCTTCCAATGGACACGCTAAGCCATCACTGTCGCCATGCATCAC
ATTGGTGCATCATAGTTCACCCCGCGCCCCTTCGCCGAAAGTCTCCTCTCTGTCACCAGCGCACACAAAACACCCATGAA
ACTGCCGCATGGGCCTCACCTTCACGCATACGCCGAATCCCACATGTCAGCGTCATCGCACCATTTCTTCTTGTCCACAG
CTGGAGGGATGCACAAGAATTTGTTCTCCCATCCAAACTCTCCCTCTC----TCTCCTCCCATTATTTTATGTACATGTT
GCACCTCCTCCTCCTACTGGTTGGAAGAAGCTCTCAAACCCCCTCTCCTC--CTCCTCCCCCTTTCTC-----ATCTCCT
CCTCTTCATAGCTTGCCGTCCTCTCTTCTCCTCCTCTCCCGGCCATCGCCTTATCACACAGTGCGTGCTCTCTCTTTTGG
TGTTCTCACCTCTCCTTTCCTCTCCATCCAAGCACTATCTTCTTGCACCTTTGTTTAGTTTCTTCCCTGTTTGCTTCTTT
GTGGATCCAGAGTTTTTAAAAACCAAGCAGGAGCATAAACAACTGCATCGCTTTAAAAATCATTGCTTCCTTTTCCAAGG
CTTCCTTTTAAACCTAAAAACAAGACACCACTCTGTTTCAATCTGATTTTTCTCTCTGTATTTTTTCCCTGCTTTTTTGG
AGTTCTAAATCTTTTGCTTCCTAGCTAGTACATCAGTACATGAGCTAGAGAGAAGCATGGCAGGCCTCGACCTTGGCACC
GCCGCGACGCGCTACGTGCACCAGTTCCACCACCTCCACCCGGACCTCCAGCTGCAGCAGAACAGCTACGCCAAGCAGCA
GCACGAGCCCGCCGACGACGACAACAACGGCAACGGCAACGGCGGCAACTACGGCGCCCAGTACGGCGAGAACAACGACG
GCGGCTCCTCATCCTCCGGCCCCGCCGGTGATGGCGCGGGCGGCGGCGGCGGGGGCGGTCCTGGGGACATGGTGGCGCGC
CGGCCACGGGGGCGCCCCCCGGGCTCGAAGAACAAGCCCAAGCCGCCGGTGATCATCACGCGGGAGAGCGCCAACACGCT
GCGCGCCCACATCCTGGAGGTCGGGAGCGGCTGCGACGTGTTTGAGTGCATCTCCACGTACGCGTGCCGACGGCAGCGCG
GCGTGTGCGTGCTGAGCGGCAGCGGCATCGTGACCAACGTGACGCTGCGGCAGCCGTCGGCCCCCGCGGGCGCCGTCGTG
ACCCTGCACGGCAGGTTCGAGATCCTGTCGCTCTCGGGCTCCTTCCTGCCCCCGCCGGCTCCCCCTGGCGCCACCAGCCT
CACCATATTCCTCGCCGGGGGGCAGGGGCAGGTCGTCGGCGGCAACGTCGTGGGCGCGCTCTACGCCGCGGGCCCGGTCA
TCGTCATCGCGGCGTCCTTCGCTAACGTCGCCTACGAGCGCCTCCCGCTGGAGGACGAGGAGGCGCCGCCTGCAACGGCA
GGCATGCAGATGCAGCAGCCCGGCGACGCTGAGGCA------GCGGCCGGCATGGGCGGCGTCCCGTTCCCTCCCGACCC
GTCGGCTGCCGGCCTGCCCTTCTTCAACCAGCTGCCTCTCAACAACATGACCGGCGGTCCCGGCTCGCAGCTCCCGCCCG
GTGCCGACGGCCACGGCTGGGCCGGCGGACGGCCACAGTTCTGAATTCTCACAGGTGCTTGGGAGATCGGTGTAATTGCT
GTCGGAGGA-AGAAGGCGAGATCACGATGAGCAACCACAAGGTTTCAGGGCAGTTTGCAAAAAGGTTAGAGCACGCACAC
AAGAACGACCCAAGGAAACAATCTATCGTCTACTGCACTATTTCTATCTCTGTACAATTTCGTAGTGTTTTGTCGATCTC
TGATCATGTTGTCCTCCTTGTTCTTCTTCTTCTTCTTCT---------------------------------------TC
TTCTTTTATTTCCTTTTCTTGTCTCTCCTGAACCTTAATCTGTGGCCTGTGTAACCTTCTCGATCTTGATTTTCAATATG
GCTTTAAATAAGTATCCCTCAATTTGTCCGACCATATGCATGGGTCTAGTCATCTTGGTATTGCTGGTGTGTTCTTTATG
TGGACGACAGATTTGATTCCAGCCGATAAGGAAGAAAATTTAGTGCTGTTAGTGTTCGTGTGGGCTTAATTAAGCTGTCA
ATTCCTACTTTATTAGATAGATCGATGTGTTGTGTGCATGCTTTTGGGTAATTATTTTTGTGTCATACAAAGGTGTTAGA
TGCCCTATGTGTAGTCTAACGAAGTGATGTGTGTATATTATACTACTCTTCACAACAGTTCAGCTTTGAGCTAACATAAT
CATATCATCAG-------TTAGTTCTTTTCTGGTTGTGAGTTTATGTTGGAGTTGTCGAATTGGGAATTGCATCTCAATT
CACTTGTTACAGTTCTTTGTTCTCACACGTGTGCATGCTTGCCATTGTTTAAAGATCACAAAGG-------TACTACTAC
TAACTGCATCCTCACAGAAACAAGCTAGC----TATAGCTCATGGGGAACCCTCAGCTGTCTGCCTATGTTTTCTTTTTC
TTACTACCACTTAACGTTTCCCCCAATGTTCTTCCTTCCTTGTCCTATTGAGTAATGTAAAGAACAGAACCATAGTTTTC
AGAAGCTATTGGAACTTGCGCATTTAGAGACCTAAGGTTTCCACTGCTGACATGTGTTATGT
>chr2A_1
GTTGCAACCACATTCAAAAAATATAGCATATACAAAGACTACA-----AGA-TCAATTTGAACCACCAAACTCGTGTACC
GCCGCGGCATAGTGTGTGCACTCGATGAAGGCCAGATCCAACCGCGGAGCAAAGGATCCTAGGGCAAAATGCGCTGGAAG
TGGGACCCATGTGTAGGGGCGCGGTATGAACAACCTCTACCCTAAGTCGTATCAATCCTGGATTAGTGGTCGTTAACCTC
AGGTTTAAGCACCTAACCCTGGTTAAGCGGCATAAAGCTTCCAATGGGCACGCTAAGCCATCACTGTCGCCATGCATCAC
AATGGTGCATCATAGTTCACCCCGCGCCCCTTCGCCGAAAGTCTCCTCTCTGTCACCAGCGCACACACAACACCCATGAA
ACTGCCTCATGGGCCTCACCTTCACGCATACGCCGAATCCCACATGTCAGCGTCATCGCACCATTTCTTCTTGTCCACAG
CTGGAGGGATGCACAAGAATTTGTTCTCCCATCCAAACTCTCTCTCTC----TCTCCTCCCATTATTTTATGTACATGTT
GCACCTCCTCCTCCCACTGGTTGGAAGAAGCTCTCAAACCCCCTCTCCTCTCCTCCTCCCCCTTTCTCATCTAATCTCCT
CCTCTTCATAGCTTGCCGTCCTCTCTTCTTCTCCCCTCCCGGCCATCGCCTTATCACACAGTGCGTGCTCTCTCTTTTGG
TGTTCTCACCTCTCCTTTCCTCTCCATCCAAGCACTATCTTCTTGCACCTTTGTTTAGTTTCTTCCCTGTTTGCTTCTTT
GTGGATCCAGAGTTTTTAAAAACCAAGCAGGAGCATAAACAACTGCATCGCTTTAAAAATCATTGCTTCCTTTTCCAAGG
CTTCCTTTTAAACCTAAAAACAAGACACCACTCTGTTTCAATCTGATTTTTCTCCCTGTATTTTTTCCCTGCTTTTTTGG
AGTTCTAAATCTTTTGCTTCCTAGCTAGTACATCAGTACATGAGCTAGAGAGAAGCATGGCAGGCCTCGACCTTGGCACC
GCCGCGACGCGCTACGTGCACCAGTTCCACCACCTCCACCCGGACCTCCAGCTGCAGCAGAACAGCTACGCCAAGCAGCA
GCATGAGCCCGCCGACGACGACCACAACGGCAACGGCAACGGCGGCAACTACGGCGCCCAGTACGGCGAGAACAACGACG
GCGGTTCCTCATCCTCCGGCCCCGCCGGTGATGGCGCGGGTGGCGGTGGCGGGGGCGGGCCTGGGGACATGGTGGCGCGC
CGGCCACGGGGGCGCCCCCCGGGATCGAAGAACAAGCCCAAGCCGCCGGTGATCATCACGCGGGAGAGCGCCAACACGCT
GCGCGCCCACATCCTGGAGGTCGGGAGCGGCTGCGACGTGTTTGAGTGCATCTCCACGTACGCGTGCCGGCGGCAGCGCG
GCGTGTGCGTGCTGAGCGGCAGCGGCATCGTGACCAACGTGACCCTGCGGCAGCCGTCGGCCCCCGCGGGCGCCGTCGTG
ACCCTGCACGGCAGGTTCGAGATCCTGTCGCTCTCGGGCTCCTTCCTGCCCCCGCCGGCTCCTCCTGGCGCCACCAGCCT
CACCATATTCCTCGCCGGGGGGCAGGGGCAGGTCGTAGGCGGCAACGTCGTGGGCGCGCTCTACGCCGCGGGCCCGGTCA
TCGTCATCGCGGCGTCCTTCGCTAACGTCGCCTACGAGCGCCTCCCGCTGGAGGACGAGGAGGCGCCGCCTGCAACGGCA
GGCATGCAGATGCAGCAGCCCGGCGACGCCGAGGCCGCGGCCGCGGCCGGCATGGGCGGCGTCCCGTTCCCTCCCGACCC
GTCGGCTGCCGGTCTGCCCTTCTTCAACCAGCTGCCTCTCAACAACATGACCGGCGGTCCCGGCTCGCAGCTCCCGCCCG
GTGCCGACGGCCACGGCTGGGCCGGCGGACGGTCACAGTTCTGAATTCTCACAGGTGCTTGGGAGATCGGTGTAATTGCT
GTCGGAGGAGAGAAGGCGAGATCACGATGAGCAACCACAAGGTTTCAGGGCAGTTTGCAAAAAGGTTAGAGCACGAACGC
ACGAACGATCCAAGGAAACAATCTATCGTCTACTGCACTATTTCTATCTCTGTACAATTTCGTAGTGTTTTGTCGATCTC
TGATCATGTTGTCCTCCTTGTTCTTTTTCTTCTTCTTCT---------------------------------------TC
TATTTT------CTTTTCTTGTCTCTCCTGAACCTTAATCTGTGGCCTGTGTAACCTTCTCGATCTTGATTTTCAATATG
GCTTTAAATAATTATCCCTCAATTTGTCCGAGCATATGCATGGGTCTAGTCATCTTGGTCTTGCTGGTATGTTGTTTATG
TGGACGACAGATTCGATTCCAGCCGATAAGGAGGAAAATTTAGTGCTGTTAGTGTTCGTGTGGGCTTAATTAAGCTGTCA
ATTCCTACTTTATTAGATAGATCGATGTGTTGTAG--ATGCTTTTGGGTAATTATTTTTGTGTCATACAAAGGTGTTAGA
TGCCCTATGTGTACTCTAACGAAGTGATGTGTGTATATTATACTAGTCTTCACGACAGTTCAGCTTTGAGCTAACATAAT
CATGCATATCTCTGTCACTTAGTTCTTTTCTGGTTGTGAGTTTATGTTGGAGTTGTCAAATTGGGAACTGCATCACAATT
CAGTTGTTACAGTGCTTTGCTCTCACACGTGTGCATGCTTGCCGTTGTTTAAAGATCACAAAGGTACTATA---TACTAC
TAACTGCATCCTCACAGAAACAAGCTATAG-TATATAGCTCATGGGGAAGCCTCAGCTGTCTGTCTATG-------TTTC
TTACTACCACTT-ACGTTTCCCCCAATGTTCTTCGCTCCTTGTCCTATTGAGTAATGTAAAGAACAGAACCATAGTTTTC
AGAAGCTATTGGAACTTGCGCATTTAGAGACCTAAGGTTTCCACTGCTGACATGTGTTATGT
>chr2D_1
GTTCTAACCAAATTCCAAAAATATAGCATATACAAAACAAAGACCACGAGA-TCGATTTGAACCACCAAACTCGTGTAGC
GCCGCGGCATAGTGTGTGCACTCAACAAGGGCCAGATCTATCGGCGGAGCAAAGGATCCTAGGGCAACATGCGCTGGAGG
TGGGACCCACGCGTAGGGGCGCGGTATGAACAACCTCTACCCTAAGTCGTATCAATCCTGGTTTAGTGGTCGTTAATCTC
AGGTTTAAGCACCTAACCCTGGTTAAGCGGCATAAAGCTTCCAATGGACACGCTAAGCCATCACTGTCGCCATGCATCAC
AATGGTGCATCATAGTTCACCCCGCGCCCCTTCGCCGAAAGTCTCCTCTCTGTCACCAGCGCACACACAACACCCATGAA
ACTGCCTCATGGGCCTCACCTTCACGCATACGCCGAATCCCACATGTCAGCGTCATCGCACCATTTCTTCTTGTCCACAG
CTGGAGGGATGCACAAGAATTTGTTCTCCCATCCAAACTCTCTCTCTCTCTCTCTCCTCCCATTATTTTATGTACATGTT
GCACCTCCTCCTCCTACTGGTTGGAAGAAGCTCTCAAACCCCCTCTCCTC--CTCCTCCCCCTTTCTC-----ATCTCCT
CCTCTTCATAGCTTGCCGTCCTCTCTTCTCCTCCCCTCCCGGCCATCGCCTTATCACACAGTGCGTGCTCTCTCTTTTGG
TGTTCTCACCTCTCCTTTCCTCTCCATCCAAGCACTATCTTCTTGCACCTTTCTTTAGTTTCTTCCCTGTTTGCTTCTTT
GTGGATCCAGAGTTTTTAAAAACCAAGCAGGAGCATAAACAACTGCATCGCTTTAAAAATCATTGCTTCCTTTTCCAAGG
CTTCCTTTTAAACCTAAAAACAAGACACCACTCTGTTTCAATCTGATTTTTCTCCCTGTATTTTTTCCCTGCTTTTTTGG
AGTTCTAAATCTTTTGCTTCCTAGCTAGTACATCAGTACATGAGCTAGAGAGAAGCATGGCAGGCCTCGACCTTGGCACC
GCCGCGACGCGCTACGTGCACCAGTTCCACCACCTCCACCCGGACCTCCAGCTGCAGCAGAACAGCTACGCCAAGCAGCA
GCACGAGCCCGCCGACGATGACCACAACGGCAACGGCAACGGCGGCAACTACGGAGCCCAGTACGGCGAGAACAACGACG
GCGGCTCCTCCTCCTCCGGCCCCGCCGGTGATGGCGCGGGTGGCGGCGGCGGGGGCGGGCCTGGGGACATGGTGGCGCGC
CGGCCACGGGGGCGCCCCCCGGGCTCGAAGAACAAGCCCAAGCCGCCGGTGATCATCACGCGGGAGAGCGCCAACACGCT
GCGCGCCCACATCCTGGAGGTCGGCAGCGGCTGCGACGTGTTTGAGTGCATCTCCACGTACGCGTGCCGGCGGCAGCGCG
GCGTGTGCGTGCTGAGCGGCAGCGGCATCGTGACCAACGTGACGCTGCGGCAGCCGTCGGCCCCCGCGGGCGCCGTCGTG
ACCCTGCACGGCAGGTTCGAGATCCTGTCGCTCTCGGGCTCCTTCCTGCCCCCGCCGGCTCCCCCTGGAGCCACCAGCCT
CACCATATTCCTCGCCGGGGGGCAGGGGCAGGTCGTCGGCGGCAACGTCGTGGGCGCGCTCTACGCCGCGGGCCCGGTCA
TCGTCATCGCGGCGTCCTTCGCTAACGTCGCCTACGAGCGCCTCCCGCTGGAGGACGAGGAGGCGCCGCCTGCAACGGCA
GGCATGCAGATGCAGCAGCCCGGCGACGCCGAC------GCCGCGGCCGCCATGGGCGGCGTCCCGTTCCCTCCCGACCC
GTCGGCTGCCGGCCTGCCCTTCTTCAACCAGCTGCCTCTCAACAACATGACCGGCGGTCCCGGCTCGCAGCTCCCTCCCG
GTGCCGACGGCCACGGCTGGGCCGGCGGACGGCCACAGTTCTGAATTCTCACAGGTGCTTGGGAGATCGGTGTAATTGCT
GTCGGCGGAGAGAAGGCGAGATCACGATGAGCAACCACAAGGTTTCAGGGCAGTTTGCAAAAAGGTTAGAGCACGCACAC
ACGAACGATCCAAGGAAACAATCTATCGTCTACTGCACTATTTCTATCTCTGTACAATTTCGTAGTGTTTTGTCGATCTC
TGATCATGTTGTCCTCCTTGTTCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TATTTT------CTTTTCTTGTCTCTCCTGAACCTTAATCTGTGGCCTGTGTAACCTTCTCGATCTTGATTTTCAATATG
GCTTTAAATAATTATCCCTCAATTTGTCCGAGCATATGCATGGGTCTACTCATCTTGGTCTTGCTGGTATGTTGTTTATG
TGGACGACAGATTCGATTCCAGCCGATAAGGAGGAAAATTTAGTGCTGTTAGTGTTCGTGTGGGCTTAATTAAGCTGTCA
ATTCCTACTTTATTAGATAGATCGATGTGTTGTAG--ATGCTTTTGGGTAATTATTTTTGTGCCATACAAAGGTGTTAGA
TGCCCTATGTGTACTCTAACGAAGTGATGTGTGTATATTATACTAGTCTTCACGACAGTTCAGCTTTGAGCTAACATAAT
CATGCATATCTC-GTCACTTAGTTCTTTTCTGGTTGTGAGTTTATGTTGGAGTTGTCAAATTGGGAATTGCATCACAATT
CAGTTGTTACAGTGCTTTGCTCTCACACGTGTGCATGCTTGCCGTTGTTTAAAGATCACAAAGGTACTATATACTACTAC
TAACTGCATCCTCACAGAAACAGGCTATAGCTATATAGCTCATGGGGAACCCTCAGCTGTCTGTCTATG-------TTTC
TTACTACCACTT-ACGTTTCCCCCAATGTTCTTCGCTCCTTGTCCTATTGAGTACTGTAAAGAACAGAACCATAGTTTTC
AGAAGCTATTGGAACTTGCGCATTTAGAGACCTAAGGTTTCCACTGCTGACATGTGTTATGT
>SNPs
---------------S------S--------------------------SSS---------------------------S
-------------S------------------------------------------------------------------
----------------------------------------------------------S---------------------
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-S-----------------------------------------------------------------S------------
------S-------------------------------------------------------------------------
------------------------------------------S-------------------------------------
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----------------------------------S---------------------------------------------
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----------------------S---------------------------------------------------------
----------------------------------------S-----------------S---------------------
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-----------------------------S-----S--------------------------------------------
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-S------S-----------------------------------------------------------------------
-------------------------S------------------------------------------------------
-SS---SSSSSS--------------------------------------------------------------------
-----------S-------------------S---------------------------S--------S----S------
-------------S------------------S-----------------------------------------------
---------------------------------SSSS-------------------------------------------
-------------S-------------------------------S-------S--------------------------
---SSSSSSSS----------------------------------------------S----------------S-----
--S----------S-----S-----------------------S------------------------------------
---------------------------SS----------------------------------S-----SSSSSSS----
------------S---------------------SS--------------------------------------------
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>forward_675
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---------------CCGTCCTCTCTTCTCCTCCT---------------------------------------------
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>reverse_2082
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-AGAACGACCCAAGGAAACAA-----------------------------------------------------------
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