>input_sequence_64860
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----------------------------------------GTATATATAGGCACACGATGCATTGATTCACCAGGAAGGA
AAACGAGAGCTCGACCTGCTAGTATCTTCTTCTTCTTCTTCTGGTAGAGAAATCGACCGTGGAGTGGAGGAGGCGCCGTT
TGT-------AGAGAAATCGATCGTTGAGTAGGTGGCCATGGTGAAGAACATGGGGATGATGGCCGAGGAGAAGTCGTAC
TTCACGTCCATGGTGGACCAAGGTGTTGTCGATCCAGACTACGAGGAGAAGCTACCCCTCTTACGTTCAGAGGTGACGAG
GTCCCTTCAGGAGATGGAATCTCCAACCTACGACGACGCCTTCGTGAAGCTGGATTGGTCCGAGAGCCTCGAGGACAGCA
CCCTCGACGTCATCAACATCCTGGCGGCGGACGGGGACGAGTGCAGGCGCGGCGCCGCCCTGTTCGCCGGCGAGCAGCCG
CTGGCAGACGCCCTGCGTGGCCAGGCCGCGTGGTACGACGCCAGGCGCGCCGAGGCCGAGGAGATCGCGTCTGGCGCGCG
GCGCCTGCGGCACACGTGCCTCGGGACGGTGGCCACGGCGGAGACGGAGGACATCGTCTGCCTGGGGGCGGTGGACTACA
TCGAGCACCTGTTCAAGGAGATGCCCCACGTCGCCTCGTCCCCGCCGGAGCAGATGGCGGCGGCGAGGGCACAGGCACAT
GCCCAGGGGCCCGCGGCCACGCGTTTCGTGGAGGAGTTCGCCGAGATTGCCGGGAGGCTCAGGCGAGGCGCGGCGGATTT
CGGGGGCGAGGACCAGGGGTTTGCCAGGGCGCTGACGGAGCGCGCGGCGACGGTGGACGCGCTGTGCGCCGACATGAGGG
CGTTCGTCGACAAGATGGAGTCTTCCGCCTATTGGAGGATGTTGAAGCACCTGAACTGAACCCGCAGCAGTCTGCCGGAA
CGCAAACGCCAACGGACGCCACGCCTCCCAA-------------------------------------------------
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>chr5D_1_TraesCS5D01G329400
CACTTTGTGTTTCTTTCAGACCATTTTCTTCACAAAAATTAATAAAAAATTCATGTATTTGAAAAATACTCATGAATTTT
AAAAGATGCTCATGGATAATTTTTGTAGACTTAAAAATGTATGAGAATTCAAAAAATGTTCTCGAATTTGCAAAATGTTA
ACTGCTTGAAAAAATATTTCTGATTTAAAAAACTGTTTCCCAATTTAAAACTCCTCGTGAATTAAAAGAAAAGTCCAAAT
TTTTTAAAAAAACCATGAATTCAAAAATATACTTGCGCATCTTAGAATTTTTTGTGAATTTTAAAAATATTATTGAATTC
AAAATCTGTTCACAAATTTAGAAAATAGTCACGTAGTTTCACAAAAGCGGAAATTAAAAGAAATAAACCATAAAATGGAA
AAGGGACACACTTAAATTAAAAAAGGAATAATTCAGAGAAAACAACAGGTCAATGAACTTGAAAAATGTTCGTGAATCTT
AAGAAAAAATACTCGCGCATCTTAGAATTTTTTCATGAAATTGAAAAATGTTCTTGAAGACAAAAAAATGCGAATGTAGA
ACATATTCTTGGATTTTAACAAGGAAAAAGAAAGAGATAATGAAAACGTAATCAGACAAAAAATAGGAAAAGGGAAACGT
GAAAATAAAATATTGAGAAAAAAAGAGGGAAAACCGCAGAGAGAAAAAAGGACCGGAAACTTCCGGAAACCGGATGAGGA
GCTTCCGGAATCTTTATAAAACAGCTCACTATCTTCCCTAAACTTGAAGATAAGAAAACAGAGAGCACTGCTATATATAT
ATATATATATATATATAGGAATAGGCGATACATATCATTTTCATTTGCATCCGACTGCAGGCCGTTCTCCAGTAATAACT
TGAAATCAGGTAAAGGCCAATGGGCCGTAAAAGAGGAGACGACGCAACAGATTGGCCCACACCGATCCGAACTCAGCGTG
CCTGCCCGAGTCGAGTCGGAAGACGGGAAACAAAGCAGAGGTATATATAGGCACACGATGCATTGATTCACCAGGAAGGA
AAACGAGAGCTCGACCTGCTAGTATCTTCTTCTTCTTCTTCTGGTAGAGAAATCGACCGTGGAGTGGAGGAGGCGCCGTT
TGT-------AGAGAAATCGATCGTTGAGTAGGTGGCCATGGTGAAGAACATGGGGATGATGGCCGAGGAGAAGTCGTAC
TTCACGTCCATGGTGGACCAAGGTGTTGTCGATCCAGACTACGAGGAGAAGCTACCCCTCTTACGTTCAGAGGTGACGAG
GTCCCTTCAGGAGATGGAATCTCCAACCTACGACGACGCCTTCGTGAAGCTGGATTGGTCCGAGAGCCTCGAGGACAGCA
CCCTCGACGTCATCAACATCCTGGCGGCGGACGGGGACGAGTGCAGGCGCGGCGCCGCCCTGTTCGCCGGCGAGCAGCCG
CTGGCAGACGCCCTGCGTGGCCAGGCCGCGTGGTACGACGCCAGGCGCGCCGAGGCCGAGGAGATCGCGTCTGGCGCGCG
GCGCCTGCGGCACACGTGCCTCGGGACGGTGGCCACGGCGGAGACGGAGGACATCGTCTGCCTGGGGGCGGTGGACTACA
TCGAGCACCTGTTCAAGGAGATGCCCCACGTCGCCTCGTCCCCGCCGGAGCAGATGGCGGCGGCGAGGGCACAGGCACAT
GCCCAGGGGCCCGCGGCCACGCGTTTCGTGGAGGAGTTCGCCGAGATTGCCGGGAGGCTCAGGCGAGGCGCGGCGGATTT
CGGGGGCGAGGACCAGGGGTTTGCCAGGGCGCTGACGGAGCGCGCGGCGACGGTGGACGCGCTGTGCGCCGACATGAGGG
CGTTCGTCGACAAGATGGAGTCTTCCGCCTATTGGAGGATGTTGAAGCACCTGAACTGAACCCGCAGCAGTCTGCCGGAA
CGCAAACGCCAACGGACGCCACGCCTCCCAAATA--ATCTCACCCTTTGT----TTGTTCTCCGCTTCAAACCATC--AA
TCTTTATCAAAAATTGTACC--GATGCACGTCGATTT-----TATATGAATGAATCATGATTAGTAGTCAGACTGGTCGC
GTGTCTGCGTGAATTTTCAGGTGGATCATTCTTGTGAGTTCTGATTGATTCAAGTTACTA--------------------
-------------TCGTTAGAGTGCCCTTTTTCTTTTGCGAGACA-----------------------------------
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------CGTTTATGTGATGGATTGACAACTCTGACAATATCCTTTTTATGTCTACGATCAGAGGGTAACATAGCGATCGA
TTTTGAGTTTCAGGGACGAGCTCCTTCCCAAGAGTCGCACCCAAACCTGCCACCCTCCGCCAGCGATCATTCCCATCTTT
GGCTGTATTTGATTATTCTTGTGATTGATTCGAGTTAATTTGATTGGAGTGACAATTTTTCTGTGATACAAGGTTTTTAG
TGTGAGGACTGAGGAT-------------------------------------------GCACCGCGATGTTAAGGAATA
TGTTGCAAATCATTGACTCTGAGAAGAAGACGTCAAAGAGAACCCGTAGATACTCCAAAGGCCCTGAACGCTAACGCTGA
AAGATCAACTGGAGACCAAA-GCCGGTCGGATTCAGGAAGATCCATTGACAACACACCTCCACACACTCTCCACTGCCGC
AAAGGCACAGCACCGAAACGGACATAGGTTGAAGTGGACATTATTCCTGCAATGTGGCAACGCCATCACCTTGTAGCCCC
AACCAAGACACAGAGCCTGCTAGAACTAGACTAAACTAGGACACTGTACGCCAAATCTGGGCCAAAGTCAAGCGTGTGAC
CATCTAGGGCCCTGTCGATAAACATGTTGCAGTATGCTGATGACACTATTTTCTTACTATAAGATGATGAAGACAATGCT
AGAAATCTAAAGTTTATCTTAACTGCCTTTGAGCAGATGTCTGGGTCGAGTATTAACTTTCACAAAAGTGAAATTTTCTT
GCTAGGTGGGGCTGTAGATAAAGCTGGCATTTACCAGGAAATCT
>chr5A_1004
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-------------------------------------------TATATAGGCACACGTT-CATTGATTCTCCAGGAAGGA
AAACGAGAGCTCGACCTGCTAGTACCATTTTCTTCTTCTACTGGGAGAGAGATCGATCGTTGAGTAAGCGGCGTTCTTCT
TCTTCTTCAGAGAGAAATCCATCGTTGAGTAGGTGGCCATGGTGATGAACATGGGGATGATGGCCGAGGAGAAGTCGTAC
TTCACGTCCATGGTGGACCAAGGTGTTGTCGATCCAGACTACGAGGAGAAGCTGCCCCTCTTACGTTCAGAGGTGACGAG
GTCCCTAGAGGAGATGGAATCTCCAACCTACGACGACGCCTTCGTGAAGCTGGATTGGTCCGAGAGCCTCGAGGACAGCA
CCCTCGACGTCGTCAACGTCCTGGCGGCGGACGGGGACGAGTGCAGGCGCGGCGCCGCCCTGTTCGCCGGCGAGCAGCCG
CTGGCAGACGCCCTGCGTGGCCAGGCCGCGTGGTACGACGCCAGGCGCGCCGAGGCCGAGGAGATCGCCTCCGGCGCGCG
GCGCCTGCGGCACACGTGCCTCGGCACGGTGGCCACGGCGGAGACGGTTGACATCGTCTGCCTGAGGGCGGTGGACTACA
TCGAGCACGTGTTCAAGGAGATGCCCCACGTCGCCTCGTCCCCGGCGGAGCAAATGGCCGCGGCGAGGGCCCAGGCACAG
GTCCAGGGCCCCGCGGCCACGCGCTTGGTGGAGGAGTTCGCCGAGATTGCCGGGAGGCTCAGGCGAGGCGCGGCGGATTT
CGGGGGCGAGGACCAGGGGTTCGCCCGGGCGCTGACGGAGCGCGCGGCGACGGTGGACGCGCTGTGCGCCGGCATGAAGG
CGTTCGTGGACAAGATGGAGTCCTCCGCCTACTGGAGGATGTTGAAGCATCTCAACTGAACCCGCAGCTGCCTGCCGGAA
CGCAAACGCCGACGGACGCCACGCCTCCCAAATACGATCTCACTCTTCGTTGGTT-----TCCGCTTCAAACCATCTCAA
TCTTTATCAAAAATTGTACC--AATGCACGTCGATTTGTTTATATATGAATGAAACATTATTAGTAGCCAAACTGGTAGC
GTGTCTGAGTGAATTTTCAGGTGGATCATTCGTGTGAGTTTTGATTGATTCAAGTTACTTTCGTTTTTTTTTGCGGGGTA
ATTCAAGTTACTTTCGTTAGAGTGCCCTTTATCTTTTGCGAGACAGGGTTAGATGCCATATATTTTGAGATGTGATAGTT
GTTATTTTAGGACCATGAGTATGAAACTCGGGTGTGTTTATATTATTCAGACGTCATAAGCTGATGGAGGCTACGGGAAA
CCTTTGCGATCATCAAGTAGTCTCGTGTTCTCCTCGCCAACGCTGCAAGCTCATGCGCGAGAGTACATTACACTTCCTTC
CCACCACGTTTATGTGATGGATTGACAACTCTTACAGTATCCTTTTTATGTCTACCATCAGAGGGTAACATAGCGATCGA
TTTTGGGCTTCAGGGACAAGCTCCTTCCCAAGAGTCACACAATCAGTTTCTAGGATCACAGGTCCCTTGTAAATTGTAAA
CCTTCGCTAACTCGCCCAGAACGCCGCAACAGCCTCGGCCTCTGCAACTGACAAGCACGGCCCAATGTGACGGCCAACAG
ATGTGAGCTGTTGTGGGATGCGAATTGTCAGTGGTGGGTGTGTGTTGTCCGATCCGTCAGCTCTGGGATGTTAAG--ATA
TGTTGCCAATCGTTGCCTCGGAGATCAAGACGTCGAAA--AACCCGTAGATACTCCAAAGACCCTGAACGCTAATGCTGA
AAGATCAACTGGAGACCAAAAGCCGGTCGGATTCAAGAAGATCCATCGACAACACACCTCCACACACTCTCCACTGCCGC
AAAGGCACACCACCGAAACGGAGATAGGTTGAAGAGGACATTATTCCTGCAATGTGGCAATGCCATCACCTCGCAGCCCC
AAGCAAGACACGGACCATCCTAGAACTAGACTAAACTAGGACAC------------------------------------
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>chr5B_1192
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------------------------------------------------------------------------------AC
TTCAGGTCTATGGTGGATGAAGGTGTA---GATCGAGAGTTCGAGGAGAAGCTACCCCTCTTCCGTTCAGAGCTGACGAG
GACCCTTGAAGAGATGGAATCTCCGACCCACGACGACGCCTTCGAGAAGCTGGGTTGGTCAGAGAGCCTCGAGGACAGCA
CCCTCGACGTCGTCAAGTTCCTGGCGGCGGACGGGGACGAGTGCAGGCGCGGCGCCGCCCTCTTCGCCGGCGAGCAGCCG
CTGGCAGACGCCCTGCGTGGCCAGGCCGCGTGGTACGACGCCAGGCGCGCCGAGGCCGAGGAGATCGCGTCCGGCGCGCG
GCGCCTGCGGCACACGTGCCTCGGGACGGTGGCGACGGCGGAGACGGAGGACATCGTCTGCCTGGGGGCGGTGGACTACA
TCGAGCACGTGTTCAAGGAGATGCCCCACGTCGCCTCGTCCCCGGCGGAGCAGATGGCGGCGGCGAGGGCCCAGGCACAG
GTCCAGGGCCCCGCGGCCACGCGCTTCGTGGAGGAGTTCGCCGAAATTGCCGGGAGGCTCAGGCGAGGGGCGGCGGATTT
CGGGGGCGAGGAACAGGGGCTCGCCGAGGCGCTGACGGAGCGCGCGGCGATGGTGGACGCGTTGTGCGCCGACATGGAGG
CGTTCGTGGACAAGATGGAGTCCTCCGCCTACTGGAGGATGTTGAAGCATCTGAACTGAACCCGCAGCAACCTGCCGGAA
CGCAAACGCC---------------TCCTAAATA--ATCTCACTCTTTGT----T-----TCCGCTTCAAACCATCTCAA
TCTTTGTCCAAAATTGTACTGTAATGCACATCGATTTAAT----TATGAATGAAACATGATTAGTCGCCAAACTGGTCGA
TTGTCTAAGTGGATTTT---------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S-S---------S----------
------------------------S-S-S----------S----S-----S-----S---S----SSSS-SS-SS-SSS-
-S-----------------S-------------------------S----------------------------------
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-------S------------------------------------------------------------------------
-----------S-----S--------------------------------------------------------------
-----------------------------------------------------------------------S--------
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--------S-----------------------------------S-------------------------S--------S
-S------S--------------S--------------------------------------------------------
---------------------S---S---------------------------------------------------S--
-------S--------------S--------S-----------------S--------------------S---------
----------S--------------------------------S-----------SSSSS--------------------
----------------------S-------------------------------S------------S--S---------
-------S-----------------------S--------S------------------S--------------------
------------------------------S-------------------------------------------------
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--------------------------------S---S------------------S------------------------
-----S-S---------S------------------S---SSSS-SS-S-S-SSS--SSSSSS-SS-SS-SSSSSSSSSS
SSS-SSS-SSSSSSSSSSSSSS-SSSS-SSS-SS-SSSSS-SSSSSSSSSSSS-SSSSSS-SSSSSSSS-S--SSSSS--
SSSSSS-SSSSS-SSS---------------------------------------------S-S-S---------SS---
------S----S---S---S----SS--------S--SSS--------------------S-------------S-----
-----------------------------------S----------S---------------------------------
---------S------------S-----------S-------------------------S----------S-S------
--S--------S--S-S-S-------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_930
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------------------------------AAGAGGAGACGACGCAACAG------------------------------
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>reverse_3200
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-------------------------------------------------------------------------------T
GCTAGGTGGGGCTGTAGAT-------------------------
