>input_sequence_64854
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---------------------------------------------------------------CTAGTGCACTCCTCAGT
CCCTACCATCCTTGTCGACCCGGCGCCGGAGAGTAAGATGACGATGATGGCCTACGGAGGATGGGGAAGCAGCAGCACGG
CGCCGCCGCCGCTCACGCTGAAGCTCCAGGTGAACACCCGCACCAACCGCGTGGTCTGCGCCGAGGCCGAGAAGGACATG
GCGGACTTGCTCTTCTCCTTCGGCAACATCCCCCTCGGCGCAGCCGGCAGGCTGCTTGGCAGGGGCTCCATGGGGAGCTT
CGGCAACTTGTCCCAGAGCCTCGGGGGGCTCCACGCCTCCTACATCATCGACCAAGACGCCAGGGACGCCCTGCTCGCGC
CCACGGGCCGCGGCCTTCTCATGCTTGCCGGCGACGGGTCGTCGTCGTCGTCGTCTGGCGGGTTCGTGCGGGGGGCCGTG
ACCTACACGGTCATGGACGACCTCACGGTCACCCCCATGTCCGTCATCTCTTTGGCCACCATCCTCAAAAACAACAAAAT
CAAGGACATCGGCCATCTCGAGGAAAGGCCTGTCCTGGTGGGACCCACTGAGGTAACGAGGATGAAACTACTATGGCTAC
TATCATGTCAAAAAAAAAAACTATGGCTACTGCTGCTGCTGCTGTTGTTGTTAGTACAAATCCAATTTTGACCGAGCTGA
GTTACTGGATATTATATGATGTTTTCTAGGCTCTGGAGTTACTGAAGGCGTCACTGCAGTCCAACACCGTACTCACCGAC
GTCTTCCTTAGGAGGGCCTGAAGCGCAACCTTGAGAGTGAAGAATCCATCCTTGCGATCGCCACCAGAATTCCTTGCCGT
GTCGTTGAGGTGTGTGCATGCGCGCGTGCGCGCGTAGCCTTTGGTCATATGGCGTGTGTTTGTGTTAGCTACATGTGCCC
GTGAAATCTGTGTTTGCTACTTGAATGAATAAAGTCAAGGAATTATC---------------------------------
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>chr4A_1_TraesCS4A01G441800
TTCGTCCCACGAATCTGCAGTCATGCCATATGCAGGCATCCACGATGCAGTTATGCACTTCTGATAACCAGAGAATCCAA
TACTTCCAACGTCATCCTTGTTCAAGATGAAGTAGTTATGAAAGGACCGAACGTCATGGTAGAGGTGATCAAAGACATTT
TTTCGCATTCGAAAGCGCCAGCGAAGATTGTCAGGGAATAGGGCATCGGGGCAAACTAGTCATCCATCATCATCAAATGG
CCCCGTGCCCTATTCCGATTGAGCACTAGATGACCCTTGATCGATCCCTTAAAATGAGAACATGCTCTTTCGCTTGCTCC
GCGTCTACAAGGACCGCCGCATAGTTATCGTTTCATCCGTGTAATCCTCCTTGTGGGACGACACAATGTAGTGCTCGTAT
AGGCACTCCATATCCGAATTCATTGTTTCATAGGAGGGACAAGTAATTTAGCAAGGGCATTTCACCAAACACTTGCCGGA
CTTGGTGGCTACTGTAGAGAGAATGGTACATGCGCGGTGATGGATGAATGAGATGTAGTGCTGGGCCACGCGAAGACACG
TGCCATGCATGCCTTGGTGATCAGGTTGTAGTGCTGGGCCACGCGAAGAGTTTGGCCGAACGTTGTGCACTTGTGCTCGT
GCCGAACGTATGCGTGCGTATAGCTAGCGGGAATCGTATCAAGCAGGTGTGGTT------TGCCCGTGCGTGTGTGCATG
CATGTTTCCCTCCTTGAAGGCTTTGTAACCTGCCCTGGTTGATTGATGGAAAAA-TGGACAAGATCTGTCCAAGAGGCGT
CAGCCGATCCAGCACCAAAAT--ACTTGCGTATGTGTCCATCAAGGTCGGACGTTGTGACGTACATGCACACACGCCGGT
CATCGCCCTCCGTCGTGCATGCTCATGTAGTGGTTCAAAAGCGAGAGGCACAGAGGCCC-------------GCCACCTT
GCTTAGAGGCGAGGCTTATCTTCCTCTGTCTATAAATTAAACGAAAATACACCAGCTTCGTA-CTAGTGCACTCCTCAGT
CCCTACCATCCTTGTCGACCCGGCGCCGGAGAGTAAGATGACGATGATGGCCTACGGAGGATGGGGAAGCAGCAGCACGG
CGCCGCCGCCGCTCACGCTGAAGCTCCAGGTGAACACCCGCACCAACCGCGTGGTCTGCGCCGAGGCCGAGAAGGACATG
GCGGACTTGCTCTTCTCCTTCGGCAACATCCCCCTCGGCGCAGCCGGCAGGCTGCTTGGCAGGGGCTCCATGGGGAGCTT
CGGCAACTTGTCCCAGAGCCTCGGGGGGCTCCACGCCTCCTACATCATCGACCAAGACGCCAGGGACGCCCTGCTCGCGC
CCACGGGCCGCGGCCTTCTCATGCTTGCCGGCGACGGGTCGTCGTCGTCGTCGTCTGGCGGGTTCGTGCGGGGGGCCGTG
ACCTACACGGTCATGGACGACCTCACGGTCACCCCCATGTCCGTCATCTCTTTGGCCACCATCCTCAAAAACAACAAAAT
CAAGGACATCGGCCATCTCGAGGAAAGGCCTGTCCTGGTGGGACCCACTGAGGTAACGAGGATGAAACTACTATGGCTAC
TATCATGTCAAAAAAAAAAACTATGGCTACTGCTGCTGCTGCTGTTGTTGTTAGTACAAATCCAATTTTGACCGAGCTGA
GTTACTGGATATTATATGATGTTTTCTAGGCTCTGGAGTTACTGAAGGCGTCACTGCAGTCCAACACCGTACTCACCGAC
GTCTTCCTTAGGAGGGCCTGAAGCGCAACCTTGAGAGTGAAGAATCCATCCTTGCGATCGCCACCAGAATTCCTTGCCGT
GTCGTTGAGGTGTGTGCATGCGCGCGTGCGCGCGTAGCCTTTGGTCATATGGCGTGTGTTTGTGTTAGCTACATGTGCCC
GTGAAATCTGTGTTTGCTACTTGAATGAATAAAGTCAAGGAATTATCATAAAGGTGTCTATTTCATTAGTTGCATGGATT
TTCTTTAATTTTAAAGTCGCATTTGTAATATCTTGGAACGGTGCTCAAGACTATCCTCCTCTCCTGGCCACTTCATATGT
TAATGAAAATCAAATGATTTCAGAACATGAAGCAATGTGATTAAATCACCACTATTTCGCAGTTTTTGGTGGTCAAAATT
TACAAATATATTAGACGGCTGAGAACTAGCGACTTCCACGTTATCGGCCTGCTCCGCAAAAATGATGCTATATATATCCA
TGCTCTTGCCAATGTGTTGTCGATCCGACGGACCTACCCCCACGTTGCTTCATTTCCCCTCCCAAAAACTTATAATACTA
TAAACAAGTTAGCCGCAAACCAACATGTAGTTTGATGGTTAGGAGAACAATAGTATCCCAGCGTATAAGGTACAAGTTCT
AGACTTGACATTGATGCACGCATTTTCTTGAATATATTTTAGGTCCTCCAATTATGCGGTTGGAGATGTTCCCGTCGACT
AAAGAGGTGTCTGTCGCGACTTCGTCAATCTGAAGATGATGTGTCGGCTCAATCTCTCAGAGGTACTCATATGGGTAGGG
TGTGTATGCGTGTGTTCATAGGGGTGAGAGTATAAATTTCTACATCTGTACTAAAAATTATCAGAGGACTTTTGTTGACG
GTCGGAAGTGCTATAGAAACACATTCACATGCGGCTAGTGTAGGCGTAGGTGCCCTTATTGATCAACAAATGTGTTGTGT
CCTCTGTTGAAAAAGATGCCACGGCTAGGCGGCGACCAAATCCCTCACCTAGGCGAAGATCTTCCAAATTCATGAGCTTA
CACATTTGTGTAAAAAATAAGTAATATTTTTGAGTTCACGGACATTTTTAAGTTTGTGAACTTTTTTTAAATTCGAAAAC
GTTTTTCAAATTCGTAAACATGTTTCGAATGTGCCTACATTTTTTTTCATTTTGTGGGCATTTTTAAATTAATTAATACC
GACCGAA
>chr7D_589
TAGTGG--------------------------------------------------------------------------
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---------------------------------CTGGGCCACGCGAAGAGTTTGGCCGAACGTTGT--------------
---------------------AGCTAGCGGAAATCGTACCAAGCAGGTGTGGTTTGCCCGTGCCCGTGCGTGTGTGCATG
CGTGTTTCCCTCTA--AAGGCGTTGTAACGTGCCCTGGTTGATTGAGGGAAAAACTGGACAAGATCTGGCTAAGAGGCGT
CAGCCGATCCAGCACCAAAATACACTTGCGTATGCGTCCATCAAGGTCGGACGTTGTGACGTATATGCACACACGCCGGT
CATCGCCCGCTGTAGGCATGCAGATT----TGGTTCAAAAGCGAGAGGCACAGAGGCATGCATCTTTTGTTTGCCACCTT
GCTTAGAGGCGAGGCT-ATCTTCCTCTATCTATAAATTAAACGAAAATACACCAGCTGCGTACCTGGTGCTCTCCCCAGT
CCCTACCATCCTAGTCGATCCGGCGCCGGAGAGTAAGATGACGATGATGGCCTACGGAGGATGGGGAAGCAGCAGCACGG
CGCCGCCGCCGCTCACGATGAAGCTCCAGGTGAACACCCGCACCAGGCGCGTGGTTTGCGCCAAGGCCGAGAAGGACATG
GGGGACTTGCTCTTCTCCTTCGGCAACATCCCCCTCGGCGCGGCCGCCACGCTGCTCGGTGGGGGCTCCATGGGCAGCTT
CGGCAACTTGTCCCAGAGCCTCGGGGGGCTCCACGCCTCCTACATCATCGACCAAGACGCCAGGGACGCCCTGCTCGTGC
CTACGGGCCGCGGCCTTCTCCTGCTTGCCCGTGGCGGGTCGT---CGTCGTCGTCTGGCGGGTTCGTGCGGGGGGCCGTG
ACCTACACGATCA-------------------------------------------------------------------
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>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS---------S-------S-----------------------------------------
-S----------SSSS-----S-------S----------------S---------------------S-S---------
----------------------------------S----------------------------S----------------
--------S-S--S-SSSSSSSSSS-SSSS---------------------------SS---------------------
----------------S----------S-----------------------------S-------S----S----S----
------------S-----S-------------------------------------------------------------
-----------------S---------------------------SS--------S------S-----------------
-S---------------------------------------S----S--S------S--SS-------------S-----
-----------------------------------------------------------------------------S--
-S------------------S--------S-S-S--------SSS-----------------------------------
---------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS
>forward_484
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----------------------------------------------------------------CCAAACACTTGCCGGA
CTTG----------------------------------------------------------------------------
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>reverse_1735
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------------------------------------------------------TGCAGTCCAACACCGTACTC------
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>forward_485
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-----------------------------------------------------------------CAAACACTTGCCGGA
CTTGG---------------------------------------------------------------------------
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>reverse_1826
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-----------------------------------------------------------------AGAATTCCTTGCCGT
GTCGT---------------------------------------------------------------------------
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>forward_1754
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------------------------------------------------------TGCAGTCCAACACCGTACTC------
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>reverse_2568
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-------GCGTGTGTTCATAGGGGTGA-----------------------------------------------------
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