>input_sequence_64851
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------------------------------------------------------------ATCC-ACCGCTCGAA
CTCTC---CGAAAATTTCAC-----------GCGCGCTCAGCACA--------AGTAGCAGTTTCAGTTTCAGAGCTCCG
CTTCAGTTAGCCACAATGCCTGCCCTCGCCAAGCCCGC---------------------CGCCGCGGCACCGAAGCCGAA
GCCCTCCGCCGCCAAGCCGAAGAAGGCCGCCGCCGGCCCCGCCCACCCGGCCTACTTCGAGGTGAGCGCCCGAGCCTCTC
CT-CTCCTGTTAAATCCTCCGCATCTCTGTGATTCGTTCGTTTCGGTTTGCGATTGGGGCTGACTGGATCTTGATTTCGA
TCTT--GCAGATGATCAAGGAGGCGATCGCGGCGCTCAAGGACAGGACCGGGTCCAGCTCGGTCGCCATCGCCAAGTACA
TCGAGGAGAAGCACGGCAAGTCTCTCCCGGCCAACTTCAAGAAGATGCTCTCCGTCCAGCTCCGCGCCTCCGCCGCCAAG
GGCAAGCTCGTCAAGGTCAAGGCCTCCTACAAGCTCTCCGACGCCGCCAAGAAGGACGCGCCCAAGCCCAAG--------
-------------GCCAAG------CCCGCAGCCCCCAAGGCTGCGGCGAAGCCCGCAAAGGACGGCGCCAAGGCCAAGA
AGAAGGCGTCCGCGAAGCCCAAGAAGGCCGCCGCC------------GGCACGAAGCGCAAGGCGCCGGAGAAGAAGACG
CTGGTCGCCAAGGCCAAGAAGTCGCCCGCGGCCAAGGCCAAGGCAAAGCCGAAGACCGTCCGCTCCCC-GGCCGCCAAGA
AGGGCCGCAAGGTCGCCGCCGCTTGATCTGTTCCGATGG--CAT-----GATGGGTTTTAGTTGCCC-TTGGTGTGTTTG
TGTTC--AGGGTATGTACAAAATGGATGCCTCATCCTCCCTGATTTAGGTCTCGATTCTGCTAGGCAGTTTCTATGTA--
-TCGTGTGTGGTGTTTAAGTTTATGAAATTGTTAGGTTTCCGGAGATGAAATGAACTTGCAGATTTATT-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>chr2D_1_TraesCS2D01G395200
TTGGTCTGTTCGACCCCTACGATGATGCGACGACAAAATATAGTACTCTTCCAGCAACAGACTCCAATGGTACTTTTGGA
AAAAAAAAACTGTGGTCTTCTTTAGTCTGGCCCGCCCAACTTTTTCTTTCAAGCTCCGTCACTGGTTTTATCCCATCCAT
AATTGTATCTGTAATGTGGCATGATTGCATGTTGAGATAAATAACTTAGTGGGGATGAATCTCTTACATATGTAGGACGT
GGATTGAGATCAGGTGACTTTCCATGCGCGAGTTACTGATGAACAATATAGTGACATTTCCTCATCTCTAGACCATGAGA
TAAAGAATCAGTGGACACGCCTCATGAACAGTGTATAGCTACAGTGCACATCTCCAATACACGGCTACACTATGCGTGCT
ACAGGACCGATGCATAGTGTTTCTATGCTACCATATATCATCCGAGCA----CTCTGCATTGTTGATCCAACGACCATGT
TACCTGGTGACATGGTATGGGCATGTCATTGGATCACT--------GACGTAGGATTGGTGTTGAAGAAAAAAAAATATT
ATTTCAATGCACTGTGTAATTACCTACATCCTGATTATTAGTCTTTTTCGTATTTTGTGCCAAATTTTGACTACGGATCT
AGCTAATAAAATATTAATACATGTCATAAAAATGTATATCATT-GATTCGTATTTGAACATATTTTCAA----ATTATTT
TTTATGACATGCACTAAAATTTTATTAGTGAAAT--AATGTCAAGATTTGGCACAGAATACGAAGGAGACTAATAAACGA
GATAGC--AATAATTTTTCTAACGCTGCCCAGTCAGCATTACAGCTCAGCTCCAGGTCCTACCTTGTGACCTGGTGTGCT
TTGCGCTTTCGGCCGATCCTCCCCGTCGCTGCTCGCGATCCGCGGCACTCCCACTCCAACCATTGAGATCGCAGCATTCT
CGTCCCCCGGATCG--CCCCCTCCGCGGATATAAATA--ATCCTCGACCCGGTGCTCCCAAATCCATCC-ACCGCTCGAA
CTCTC---CGAAAATTTCAC-----------GCGCGCTCAGCACA--------AGTAGCAGTTTCAGTTTCAGAGCTCCG
CTTCAGTTAGCCACAATGCCTGCCCTCGCCAAGCCCGC---------------------CGCCGCGGCACCGAAGCCGAA
GCCCTCCGCCGCCAAGCCGAAGAAGGCCGCCGCCGGCCCCGCCCACCCGGCCTACTTCGAGGTGAGCGCCCGAGCCTCTC
CT-CTCCTGTTAAATCCTCCGCATCTCTGTGATTCGTTCGTTTCGGTTTGCGATTGGGGCTGACTGGATCTTGATTTCGA
TCTT--GCAGATGATCAAGGAGGCGATCGCGGCGCTCAAGGACAGGACCGGGTCCAGCTCGGTCGCCATCGCCAAGTACA
TCGAGGAGAAGCACGGCAAGTCTCTCCCGGCCAACTTCAAGAAGATGCTCTCCGTCCAGCTCCGCGCCTCCGCCGCCAAG
GGCAAGCTCGTCAAGGTCAAGGCCTCCTACAAGCTCTCCGACGCCGCCAAGAAGGACGCGCCCAAGCCCAAG--------
-------------GCCAAG------CCCGCAGCCCCCAAGGCTGCGGCGAAGCCCGCAAAGGACGGCGCCAAGGCCAAGA
AGAAGGCGTCCGCGAAGCCCAAGAAGGCCGCCGCC------------GGCACGAAGCGCAAGGCGCCGGAGAAGAAGACG
CTGGTCGCCAAGGCCAAGAAGTCGCCCGCGGCCAAGGCCAAGGCAAAGCCGAAGACCGTCCGCT-CCCCGGCCGCCAAGA
AGGGCCGCAAGGTCGCCGCCGCTTGATCTGTTCCGATGG--CAT-----GATGGGTTTTAGTTGCCC-TTGGTGTGTTTG
TGTTC--AGGGTATGTACAAAATGGATGCCTCATCCTCCCTGATTTAGGTCTCGATTCTGCTAGGCAGTTTCTATGTA--
-TCGTGTGTGGTGTTTAAGTTTATGAAATTGTTAGGTTTCCGGAGATGAAATGAACTTGCAGATTTATTACCAAATTTCT
GTATTTTTCTGAAGCTCTGTTTACGCCTTTCTGATATTCAGTTTTCACCTTACTCGGCATTGCTGGCACGCGTCGTCAGT
TTGATA-TGGGGAATAG---------------TCTGCTTATGATTTGTTAGATCTCCCTACTACTGCGTA-CGTTCCCTT
CCCGGAGGGAGTAATGAGTTACCC-AAATAGATGATCGAAAATTTAGTTGGCCAAATTTGCGCAAGGCCTTTTGA---GT
GTCAGTCGGTCACAATTTGCGCCTTTTATGCTGAGT--TCCGTTGATAGATTTGGCCCCAGATTACCCTCTTTCTGGCAG
AAACTGAACATAGGTGTTCCACAGACCACTGAATAAATTGGGTGGGAATCGAGAGACAAAGAGAGCGGGTGAGATTCAGT
TTCTTCT---TATTTCTTCAGATAACTCACACACAACGCATGAAACCTCGGTCACGCAACGGGAACCAACTCGAGTCCAA
ATCCACCACTCGGCCCGACGGTTAGTGGGGTAGCCTTGTCAGCTCTTTGTCATCCAAAAACCAGCGTCTTGCACGATCTC
AAAAAGAAAAACCCAGCGGTTCCTGCCGTCGTCTTCTCGTTGTTCTTAACTGAAGAGCTGATATGGGCATACGGCTAGCC
GGCCGGAGGCGTCGAGGTGCGGAGGATCTTGCCCCCTGTCGGCGGGAGTGACCCGTTTTTGTTCTTGTTCTTGTTAGATT
CAACGTCTTGGTTGGGGTTGTATGCCGGCGGCGATGGCCCTTTGTATGAATAATGTCTTCCACGTTCTATTCCCGCCCTG
ATGGTGCCTCTAGCATCGTTAGAGGGCGTGTGGAGGTTTATCTCTGTCGAATCTCGCGGGATTCGGTCGGTGCTCGTCTT
CGGTGGATCTGTCTGAATCTGGTCTTCATTCGTCTTCTTTTGATTGTTTACATGTTTGACCCTTCTGATCTACGGCTTCC
TTCAGCGATGATGGTTGCTAATCTGGTGTGCTGGTCCTATGGGGCCTTAGCATGA
>chr2B_148
--------------------------------------------------------------------------------
-------------------------------------------------------------------TTATCCCATCTAT
AATTGCATTGC-AATGTGACATGCTTACATGTTGAGATAAATAACTTAGTGAAGATGAATCTCTTACGTATGTAGGACGT
GGATTGAGATTAGGTGACTTTGCATGGGCGAGTCATTGATGAACGATATGGTGACATTCCCCCATCTCTAGACCATGATA
TCAAGAATCAGTGGACATATCCCATGAATAGTGTATACCTACAGCGCACATCAACAATACCCGGCTACA-TATGCGTGCT
ACAGGATCAATGCACAGTGTTTCTGTGCTACAGCTACAGTATATGATTTGGGCTCTCCACTCTTGATCCAACGGCCATAC
TACATGGTGACATGCTATGCGCATGTCATTGGATCATGGTCCGTAGGACGTAGGATTAGTGCTGGAGGAAATG---TATT
ATTTCAATGCAATGCGTAATTACGTCCGTCCTGGTTTATAGTCCCCTTCGTATTTTGTGTCAATTTTTGACTAGAGATTA
GTTAACAAAAAA---AATGCATGTCACAAAAATGTATATTGTTGGATTCGTATTTGAACATATTTTTAACTATATTATTT
TTTATGACATGCATT--AATTTTTTTAGTGAAATTTAAGGTTAAAATTTCGCACAGAATACGAAGGAGACCGATAACCAG
GACGGGATAATAGTTTTTCTAAAGCTACCCAGTCAGCATTACAGCTCAGCTGCAGGTCCTACCTTGTGACCTGGTGTACT
TTGCGCTTTCGGCCGATCCTTCCCGTCACTGCTCGCGATCCGCGGCACTCCCACTCCAACCAATGAGATCGCAGCATTCC
CATCCCCCGGATCG--CCCCCTCCGCGGGTATAAATA--ACCCTCGACCCGGTGCTCCCAAATCCATCC-ACCGCTCGAA
CTGTCTTGCGAAAATTTCAC-----------GCGCGCTCAGCACA--------AGTAGCAGTTTCAGTTTCAGAGCTCCG
CTTCAGTTAGCCACCATGCCTGCCCTCGCCAAGCCCGC---------------------CGCCGCGGCACCGAAGCCGAA
GCCCTCCGCCGCCAAGCCGAAGAAGGATGCCGCCGGCCCTTCCCACCCGGCCTACTTCGAGGTGAGCGCCCGAGCCTCTC
C------TGTTGAATCCTCTGCATCTCTGTGATTCGTTCGTTTCGGTTTGCCATTGGGGCTGATTGGATTTTGATTTCGA
TCTTG-GCAGATGATCAAGGAGGCGATCGCGGCGCTCAAGGACAGGACCGGGTCCAGCTCGGTCGCCATCGGCAAGTACA
TCGAGGAGAAGCACGGCAAGTCCCTCCCGGCCAACTTCAAGTAGATGCTCTCCGTCCAGCTCCGGTCGTTCGCCTCCAAG
GGCAAGCTCGTCAAGGTCAAGGCCTCCTACAAGCTCTCAGACGCCGCCAAGAAGGACGCGCCCAAGCCCAAG--------
-------------CCCAAGGCCAAGCCCGCCGCCCCCAAGGCCGCGGCGAAGCCCGCCAAGGACGCCGCCAAGCCCAAGA
AGAAGGCGGCCGTGAAGCCCAAGAAG---GCCGCCGCCGCCGC---TGGCACGAAGCGCAAGGCGCCCGAGAAGAAGACG
CTGGTCGCCAAGGCCAAGAAGTCGCCCGCGGCCAAGGCCAAGGCGAAGCCGAAGACCGTCCGGT-CCC-GGCCGCCAAGA
AGGGCCGCAAGGTCGCCGCCGCTTGATCTGTTCCGATGGCAC-------GATGGGTTTTAGTTGTTC-TTGGTGTGTTTG
TCTTC--AGGGTATGTACAAAATGGATGCCTCATCCTCCCTGATTTAGGTCTCGATTCTGCTAGGCAGTTTCTATGTA--
-TCGTGTGTGGTGTTTAATTCTATGAAATTGCTAGGTTTCGGGAGATGAAATTAACTTGCAGATTTATTACCCAATTTCT
GTATTTT-CTGAAGATCTGTTTATGCCTTTCTGATATTCAGTTTTCACTTTACTCGGCAATGCTGACACGCGTCGTCAGT
TTGATA-TGGGGAATAG-------GGGTGTCTTCTGCT--------------TCTCCATACTTCTGCGTA-CGTTCCCTT
CCCGGATTAGTAATAAATCTGGGCCAAA---------------TTAGTTGGCCAAATTTGCGCAAGGCCTTTTGATGAGT
GTCAGTTGGTCCCAGTTTGCGACTTCTGTGCTTCGGGCTCCGTTGATAGATTTGGCCCCAGATTGCCCTCTTTCTGTCAG
AAACTGAACAATGGCGTTCCAAACACCACTGAATAAAT---------------------------CGGGTGAGATTCAGT
TTCTTCT---TATTTCTTCAGATAACTCACACACCACGCATGAAACCTCGGTCACGCAACGGGAACCAATTCGAGTCCAA
ATCCACCACTCGGCCCGACGGTTACTGGGGTAGCCTTGTCAGCTCTCCGTCGTCC-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>chr2A_789
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------ATAGTTTTTCTAAAGCTACCCAATCAGCATTACAGCTCAGCTCCAGGTCCTACCTCGTGACCTGGTATACT
TTGCGCTTTCGGCCGATCCTTCCCGTCGCTGCTCGCGATCCGCGGCACTCCCGCTCCAACCAATGAGATCGCAGCATTCC
CATCCCCCGGATCG--CCCCCTCTGCGGGTATAAATA--ATCCCCGACCCGGTGCTCCCAAATTCATCC-ACCACTCGAA
CTCTCCTCCGAAAATTTCAC-----------GCGCGCTCAGCACA--------AGTAGCAGTTTCAGTTTCAGAGCTCCG
CTTCAGTTGGCCACCATGCCTGCCCTCGCCAAGCCCGC---------------------CGCCGCCGCACCGAAGGCGAA
GCCCTCCGCCGCCAAGCCGAAGAAGGTCGCCGCCGGCCCCTCCCACCCGGCCTACTTCGAGGTGAGCGCCCGAGCCTCTC
C------TGTTAAATCCTCTGCATCTCTCAGATTCGTTCGTTTCGGTTTGCGATTGGGGCTGACTGGATCTTGATTTCGA
TCTTG-GCAGATGATCAAGGAGGCGATCGCGGCGCTCAAGGACAGGACCGGGTCCAGCTCGGTCGCCATCGCCAAGTACA
TCGAGGAGAAGCACGGCAAGTCCCTCCCGGCCAACTTCAAGAAGATGCTCTCCGTCCAGCTCCGCGCGTCCGCCTCCAAG
GGCAAGCTCGTCAAGGTCAAGGCCTCCTACAAGCTCTCCGACGCCGCCAAGAAGGACGCGCCCAAGCCCAAG--------
-------------CCCAAGGCCAAGCCTGCCGCCCCCAAGGCCGCGGCGAAGCCCGCAAAGGATGCCGCCAAGCCCAAGA
AGAAGGCGGCCGCGAAGCCCAAGAAGGCCGCCGCCGCCGCTGC---TGGCACGAAGCGCAAGGCGCCGGAGAAGAAGACG
CTGGTCGCCAAGGCCAAGAAGTCGCCCGCGGCCAAGGCCAAGGCGAAGCCCAAGACCGTCCGCT-CCCCGGCCGCCAAGA
AGGGCCGCAAAGTCGCCGCCGCTTGATCTGGTCCGATGG--C-------GATGTGTTTTAGTTGTGC-TTGGTGTGTTTG
TGTTC--AGGGTATGTACAAAAAGGACGCCTCGTCCTCCCTGATGCAGGTCTCGATTCTGCTAGGCAGTTTCTATGTA--
-TCGCGTGTGGTGTGTAACTCTATGAAATTGTTAGGTTTCCGGAGATGAAATGAAATTGCAGATTTATTACCCGATTTCT
GTATTTT-CTGAACCTCTGTTTATGCCTTTCTGATATTCAGTTTCACCTTCTCGGTTC---GCTAGCACGCGTCGTCAGT
TTGATAATGGGGAATAGCAGTTTTGGGTGTCCTCTGCTTATAATTTGTTAGATATCCCTACTCCTGGGCAGCGTTCCCTT
CCCGGATGGAGTAGTTAGTTACCCAAAATAGATGATGGAAAATTTAGTTGGCCAAATTTGCGCCTTGTA-----------
----------------------------TGCTTCGGGCTCCGTCGATAAATTTGGCCCCAGATTGCCATCTTTCTGTCAG
AAACTGAACATAGGTGTTCCACAAAC-------------------------------AAAGAGAGCGGGTGAGATTCAGT
TTCTTCGTAGTATTTCTTCAGATAGCTCACACACAACGAATGAAACCTCGGTCACGCAACGGGAACCAGCTCGACTCCAA
ATCCACCACTCGGCCCGACGGTTAGTGGGGTAGCCATG------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>chr2A_789
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------ATAGTTTTTCTAAAGCTACCCAATCAGCATTACAGCTCAGCTCCAGGTCCTACCTCGTGACCTGGTATACT
TTGCGCTTTCGGCCGATCCTTCCCGTCGCTGCTCGCGATCCGCGGCACTCCCGCTCCAACCAATGAGATCGCAGCATTCC
CATCCCCCGGATCG--CCCCCTCTGCGGGTATAAATA--ATCCCCGACCCGGTGCTCCCAAATTCATCC-ACCACTCGAA
CTCTCCTCCGAAAATTTCAC-----------GCGCGCTCAGCACA--------AGTAGCAGTTTCAGTTTCAGAGCTCCG
CTTCAGTTGGCCACCATGCCTGCCCTCGCCAAGCCCGC---------------------CGCCGCCGCACCGAAGGCGAA
GCCCTCCGCCGCCAAGCCGAAGAAGGTCGCCGCCGGCCCCTCCCACCCGGCCTACTTCGAGGTGAGCGCCCGAGCCTCTC
C------TGTTAAATCCTCTGCATCTCTCAGATTCGTTCGTTTCGGTTTGCGATTGGGGCTGACTGGATCTTGATTTCGA
TCTTG-GCAGATGATCAAGGAGGCGATCGCGGCGCTCAAGGACAGGACCGGGTCCAGCTCGGTCGCCATCGCCAAGTACA
TCGAGGAGAAGCACGGCAAGTCCCTCCCGGCCAACTTCAAGAAGATGCTCTCCGTCCAGCTCCGCGCGTCCGCCTCCAAG
GGCAAGCTCATCAAGGTCAAGGCCTCCTACAAGCTCTCCGACGCCGCCAAGAAGGACGCGCCCAAGCCCAAG--------
-------------CCCAAGGCCAAGCCTGCCGCCCCCAAGGCCGCGGCGAAGCCCGCAATGGATGCCGCCAAGCCCAAGA
AGAAGGCGGCCGCGAAGCCCAAGAAGGCCGCCGCCGCCGCTGC---TGGCACGAAGCGCAAGGCGCCGGAGAAGAAGACG
CTGGTCGCCAAGGCCAAGAAGTCGCCCGCGGCCAAGGCCAAGGCGAAGCCCAAGACCGTCCGCT-CCCCGGCCGCCAAGA
AGGGCCGCAAAGTCGCCGCCGCTTGATCTGGTCCGATGG--C-------GATGTGTTTTAGTTGTGC-TTGGTGTGTTTG
TGTTC--AGGGTATGTACAAAAAGGACGCCTCGTCCTCCCTGATGCAGGTCTCGATTCTGCTAGGCAGTTTCTATGTA--
-TCGCGTGTGGTGTGTAACTCTATGAAATTGTTAGGTTTCCGGAGATGAAATGAAATTGCAGATTTATTACCCGATTTCT
GTATTTT-CTGAACCTCTGTTTATGCCTTTCTGATATTCAGTTTCACCTTCTCGGTTC---GCTAGCACGCGTCGTCAGT
TTGATAATGGGGAATAGCAGTTTTGGGTGTCCTCTGCTTATAATTTGTTAGATATCCCTACTCCTGGGCAGCGTTCCCTT
CCCGGATGGAGTAGTTAGTTACCCAAAATAGATGATGGAAAATTTAGTTGGCCAAATTTGCGCCTTGTA-----------
----------------------------TGCTTCGGGCTCCGTCGATAAATTTGGCCCCAGATTGCCATCTTTCTGTCAG
AAACTGAACATAGGTGTTCCACAAAC-------------------------------AAAGAGAGCGGGTGAGATTCAGT
TTCTTCGTAGTATTTCTTCAGATAGCTCACACACAACGAATGAAACCTCGGTCACGCAACGGGAACCAGCTCGACTCCAA
ATCCACCACTCGGCCCGACGGTTAGTGGGGTAGCCATG------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>chrUn_789
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------ATAGTTTTTCTAAAGCTACCCAATCAGCATTACAGCTCAGCTCCAGGTCCTACCTCGTGACCTGGTATACT
TTGCGCTTTCGGCCGATCCTTCCCGTCGCTGCTCGCGATCCGCGGCACTCCCGCTCCAACCAATGAGATCGCAGCATTCC
CATCCCCCGGATCG--CCCCCTCTGCGGGTATAAATA--ATCCCCGACCCGGTGCTCCCAAATTCATCC-ACCACTCGAA
CTCTCCTCCGAAAATTTCAC-----------GCGCGCTCAGCACA--------AGTAGCAGTTTCAGTTTCAGAGCTCCG
CTTCAGTTGGCCACCATGCCTGCCCTCGCCAAGCCCGC---------------------CGCCGCCGCACCGAAGGCGAA
GCCCTCCGCCGCCAAGCCGAAGAAGGTCGCCGCCGGCCCCTCCCACCCGGCCTACTTCGAGGTGAGCGCCCGAGCCTCTC
C------TGTTAAATCCTCTGCATCTCTCAGATTCGTTCGTTTCGGTTTGCGATTGGGGCTGACTGGATCTTGATTTCGA
TCTTG-GCAGATGATCAAGGAGGCGATCGCGGCGCTCAAGGACAGGACCGGGTCCAGCTCGGTCGCCATCGCCAAGTACA
TCGAGGAGAAGCACGGCAAGTCCCTCCCGGCCAACTTCAAGAAGATGCTCTCCGTCCAGCTCCGCGCGTCCGCCTCCAAG
GGCAAGCTCATCAAGGTCAAGGCCTCCTACAAGCTCTCCGACGCCGCCAAGAAGGACGCGCCCAAGCCCAAG--------
-------------CCCAAGGCCAAGCCTGCCGCCCCCAAGGCCGCGGCGAAGCCCGCAATGGATGCCGCCAAGCCCAAGA
AGAAGGCGGCCGCGAAGCCCAAGAAGGCCGCCGCCGCCGCTGC---TGGCACGAAGCGCAAGGCGCCGGAGAAGAAGACG
CTGGTCGCCAAGGCCAAGAAGTCGCCCGCGGCCAAGGCCAAGGCGAAGCCCAAGACCGTCCGCT-CCCCGGCCGCCAAGA
AGGGCCGCAAAGTCGCCGCCGCTTGATCTGGTCCGATGG--C-------GATGTGTTTTAGTTGTGC-TTGGTGTGTTTG
TGTTC--AGGGTATGTACAAAAAGGACGCCTCGTCCTCCCTGATGCAGGTCTCGATTCTGCTAGGCAGTTTCTATGTA--
-TCGCGTGTGGTGTGTAACTCTATGAAATTGTTAGGTTTCCGGAGATGAAATGAAATTGCAGATTTATTACCCGATTTCT
GTATTTT-CTGAACCTCTGTTTATGCCTTTCTGATATTCAGTTTCACCTTCTCGGTTC---GCTAGCACGCGTCGTCAGT
TTGATAATGGGGAATAGCAGTTTTGGGTGTCCTCTGCTTATAATTTGTTAGATATCCCTACTCCTGGGCAGCGTTCCCTT
CCCGGATGGAGTAGTTAGTTACCCAAAATAGATGATGGAAAATTTAGTTGGCCAAATTTGCGCCTTGTA-----------
----------------------------TGCTTCGGGCTCCGTCGATAAATTTGGCCCCAGATTGCCATCTTTCTGTCAG
AAACTGAACATAGGTGTTCCACAAAC-------------------------------AAAGAGAGCGGGTGAGATTCAGT
TTCTTCGTAGTATTTCTTCAGATAGCTCACACACAACGAATGAAACCTCGGTCACGCAACGGGAACCAGCTCGACTCCAA
ATCCACCACTCGGCCCGACGGTTAGTGGGGTAGCC---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>chr2A_860
TTGAGCTG------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------TTCGCCCGCCCCTTCTCTCGCAC--TCACAATCCGCGGCACTCCCCCTCCAGCCAATGAGATCGCAGCATTCC
CACCCTCCCGGATCGCTCCCCTCCGTGACTATAAATACGAGCCTCCACCCGGTTCTCTCGAATCCATCC-ACCTCTCGAG
CTCTTTTCTGAAGCCGCA-----AGCGAGCAGAGCACACCGCACA--------CGTAGCAGTTTCCCTTTCAGATATTTT
CTTCGACTAGCCACCATGACTGCTTTGGCCAAGCCCTC---------------------CGCCTCAGCGCCGAAGCCGAA
G------------------AAGACCTCCGCCGCTGGAGCCGCCCACCCGACCTACTTCGAGGTGAGCGTCCGAGCCTCTC
AT-GTGTCC---------------CCCTCTGATTGAATGGTTTTGA-TTGCGATTGGGCTG-------------ATTGGA
TCTTGCGCAGATGATCAAGGAGGCGATCGCGGCTCTCAAGGACAGGACCGGGTCGAGCTCGGTCGCCATCGCCAAGTTCA
TCGAGGAGAAGCACGGCAAGGCCCTCCCGGCCAACTTCAAGAAGATGCTCTCCGTCCAGCTCCGCTCCTCCGCCGCCAAG
GGCAAGCTCGTCAAGGTCAAGGCCTCCTACAAGCTCTCCGACGCCGCCAAGAAGGACTCCCCCAAGCCCAAGGCCAAGCC
CGCCGCCCCCAAGGC---------------------------TGCGGCGAAGCCCGCAAAGGACGCCGCCAAGCCCAAGA
AGAAGGCCTCCGCGAAGCCCAAGAAGGCCGCCGCCGC---------TGGCACGAAGCGCAAGGCACCCGAGAAGAAGAAG
CTGGTCGCCAAAGCCAAGAAGTCGCCCGCGGCGAAGGCCAAGGCGAAGCCGAAGACCGTCCGCT-CCCCGGCCGCCAAGA
AGGCCCGCAAGGTCGCCTCCGCTTGATCTGATCTGATCT--GATCTTATAGGTGGTTTTAGGTGTGCGTTGGTGC-----
---TC--TGGGTCTGTAC-AAAAGGATGCCTCATCCTCCCTGATTTAGGCTTCGGTTCTGCTAGGCAGGTTCTATGTACT
ATCGCTGGTGGTGTTTA-GTGTCTGGAATGTTCAGGTGTC----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>chr2D_885
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------TCGCGGATCGCGATCCGCGGCACCGCCG-TCCAGCCAATAAGATCGCAGCATTCC
CACCCCCCCGGATCGACCCCCTCGGCGTGTATAAATA--AGCCTCGACCTGGCCCTCTCGAATCAATCC-ACCTCTCGAG
CTCCTCCTCCTCCTCCAAATCTCAAGC----GAGCACACCGCGCAAGTAGCACCGCTTCAGTTTCGGTTTCAGAGCTCCG
CTTCAGTCAGCTGACATGCCTGCCCTCGCCAAGCCCGCTGCCCGCCCCGCCAAGCCCGCCGCCGCGGCGCCGAAGCCGAA
GCCCGCCGCCGCCAAGCCCAAGGCGGCCGCCGCTGGAGCCGCCCACCCGACCTACTTTGAGGTGAGCTTCTGAACCTCTC
CT-CTGTTC---------------CCCTCTGATTGAATGGTTTTGA-CTTCGATTGGGGCTGATTGGATTCTGAATTGGA
TCTTG-GCAGATGATCAAGGAGGCGATCGCGGCGCTCAAGGACAGGACCGGGTCGAGCTCGGTCGCCATCGCCAAGTACA
TCGAGGAGAAGCACGGCAAGGCTCTCCCGCCCAACTTCAAGAAGATGCTCTCCGTCCAGCTCCGCGCTTCCGCCGCCAAG
GGCAAGCTCGTCAAGGTCAAGGCCTCCTACAAGCTCTCCGACGCCGCCAAGAAGGACTCCCCCAAGGCCAAG--------
-------------CCC---------------------------GCGGCGAAGCCCGCCAAGGACGCCGCCAAGCCCAAAA
AGAAGGCGGCCGAGAAGCCCAAGAAGACGGCCGCCGT---------TGGCACCAAGCGCAAGGCGCCGGAGAAGAAGAAG
CTGGTCACCAAGGCCAAGAAGTCGCCGGCTGCCAAGGCCAAGGCGAAGCCGAAGACCGTCCGCT-CCCCGGCCGCCAAGA
AGGCCCGCAAGGTCGCCGCCGCTTGATCT---------T--GATGCGATAGCTGGTCTTAGGAGTGC-TTGGTGT-----
---TCCAAGGGTCTGTAC-AAAAGGATGCCTCATCCTCCCTTGTTTAGGTTTCGGTTCTGCTAGGCAAGTT-TATGTA--
-TCGTGGGTGGTGTTTAGTGTAATGAAATGGTT-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>chr2B_892
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------TCGCGATCCGCGACACCGCCG-TCCAGCCAATGAGATCGCAGCATTCC
CATCACCCCGGATCGATCCCCTCGGCATGTATAAATA--AGCCTCGACCCGGTCCTCTCGAATCCATCC-ACCTATCGAG
CTCCTTCTCGAAATCTCA-----AAGC----GACCACACCGCGCAAGTCGCA--GCTTCAGTTTCAGTTTCAGAGCTCCG
CTTCAGTTAGCCACCATGCCTGCCCTCGCCAAGCCCGC---------------------CGCCGCGGCGCCGAAGCCGAA
GCCAGCCGCCGCCAAGCCCAAGGCGGCCGCCGCTGGAGCCGCCCACCCGACCTACTTCGAGGTGAGCTTCTGAACCTCTC
CT-CTGTTC---------------CCCTGCGATTGAATGGTTTTGA-TTGCGATTT-GGCTGATTGGATTTTGAATTGGA
TCTTG-GCAGATGATCAAGGAGGCGATCGCGGCGCTCAAGGACAGGACCGGGTCCAGCTCGGTCGCCATCGCCAAGTACA
TCGAGGAGAAGCACGGCAAGGCTCTCCCGGCCAACTTCAAGAAGATGCTCTCCGTCCAGCTACGCGCCTCCGCCGCCAAG
GGCAAGCTCGTCAAGGTCAAGGCCTCCTACAAGCTCTCCGACGCCGCCAAGAAGGACGCGCCCAAGCCCAAA--------
-------------GCC---------------------------GCGGCGAAGCCCTCCAAGGACGCCGCCAAGCCCAAGA
AGAAGGCGGCCGAGAAGCCCAAGAAGACCGCCGCCG------C---TGGCACCAAGCGCAAGGCGCCCGAGAAGAAGAAG
CTGGTCACCAAGGCCAAGAAGTCGCCCGCTGCCAAGGCCAAGGCGAAGCCGAAGACCGTCCGCT-CCCCGGCCGCCAAGA
AGGCCCGCAAGGTCGCCGCCGCCTGATCTGATCTGATCCGG--TCCGATAGCTGGTCTTAGGAGTGC-TTGATGT-----
---TCCAAGGGTCTGTAC-AAAAGGATGCCTCATCCTCCCTTGTTTAGGTTTCGGTTCTGCTTGGCAAGTT-TATGTA--
-TCGTGGGTGGTGTTTAGTGTAATGAAATGGTT-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>chr2B_897
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------ATCCGCGGCACTTCCACTCCAGCCAATGAGATCGCAGCATTGC
CACCCTCCCGGATCGCTCCCCTCCATGATTATAAATATGGGCCTCCACCCGGTTCTCTCGAATCCATCCCACCTCTCGAG
CTCTTTTCTGAAGCCGCA-----AGCGAACAGAGCACACTGCACG--------CATAGCAGTTTCCCTTTCAGATATTTT
CTTCGATTAGCCACCATGACTGCCTTGGCCAAGCCCGC---------------------CGCCTCAGCGCCGAAGCC---
---CTCCGCTGCCAAGCCGAAGGCGGCCGCCGCTGGCGCCTCCCACCCGACCTACTTCGAGGTGAGCGTTTGAACCTCCC
CCCGTGTTC---------------CCCTGTGATTCAGTGGTTTTGA-CTGCGATTGGGGCTGATTGAATTTTTATTTCGA
TCTTGCGCAGATGATCAAGGAGGCGATCGCGGCGCTCAAGGACAGGACCGGGTCGAGCTCGGTCGCCATCGCCAAGTACA
TCGAGGAGAAGCACGGCAAGGCCCTCCCGGCCAACTTCAAGAAGATGCTCTCCGTCCAGCTCCGCGCGTCCGCCTCCAAG
GGCAAGCTCGTCAAGGTCAAGGCCTCCTACAAGCTCTCAGACGCCGCCAAGAAGGACGCGCCCAAGCCCAAGGCCAAGCC
CGCCGCCCCCAAGGCC---------------------------GCGGCGAAGCCCGCCAAGGACGCCGCCAAGCCCAAGA
AGAAAGCGGCCGTGAAGCCCAAGAAGGCCGCCGCCG------CCGCTGGCACGAAGCGCAAGGCGCCCGAGAAGAAGACG
CTGGTCGCCAAGGCCAAGAAGTCGCCTGCGGCCAAGGCCAAGGCAAAGCCGAAGACCGTCCGCT-CCCCGGCCGCCAAGA
AGGGCCGCAAGGTCGCCGCCGCTTGATCTGATCTGATCT--GAT-----AGGTGGTTTTAGGTGTGCGTTGGTGT-----
---TC--TCGGTCTGTAC-AAAAGGATGCCTCATCCTCCCTGATTTAGGTTTCGGTTCTGCTAGGCAGGTTCTATGTA--
-TCGCTGGTGGTGTTTAGTGT-CTGGAATGTTCAGGTATC----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>chr2D_952
CGCTCC--------------------------------------------------------------------------
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-------------------CCTCCCTGACTATAAGTAC--GCCTCGACCCGGTTCTCTCGAATCCATCC-ACCTCTCGAG
ATCTTTTCTGAAGCCGCA-----AGCGAGCAGAGCACACCGCAGA--------CGCAGCAGTTTCCCTTTCAGACATTTT
CTTCGATTAGCCACCATGACTGCCTTGGCCAAGCCCGC---------------------CGCCTCAGCGCCGAAGCC---
---CTCCGCCGCCAAGCCGAAGGCGGCCGCCGCTGGTGCCTCCCACCCGACCTACTTCGAGGCGAGCGTTTGAACCTCTC
CT-CTGTTC---------------CCCTGCGATTGAATGGTTTTGA-CTGCGATTGGGACTGATTGGATT-TGATTTCGA
TCTTGCGCAGATGATCAAGGAGGCGATCGCGGCGCTCAAGGACAGGACGGGGTCGAGCTCGGTCGCCATCGCCAAGTACA
TCGAGGAGAAGCACGGCAAGGCCCTCCCGGCCAACTTCAAGAAGATGCTCTCCGTCCAGCTCCGCGCCTCCGCTGCCAAG
GGCAAGCTCGTCAAGGTCAAGGCCTCCTACAAGCTCTCCGACGCCGCCAAGAAGGACGCGCCCAAGGCCAAGGCCA----
--------------------------------------------CGGCCAAGCCCGCCAAGGACGCCGCCAAGGCCAAGA
AGACGGTGGCCGCGAAGCCCAAGAAGACCGCCGCCG------C---TGGCACCAAGCGCAAGGCACCCGAGCAGAAGAAG
CTGGTCGCCAAGGCCAAGAAGTCGCCTGCGGCCAAGGCCAAGGCGAAGCCGAAGACCGTCCGCT-CCCCGGCCGTCAAGA
AGGCCCGCAAGGTCGCCGCGGCTTGATCTGATCTGATCT--GAT-----AGGTGGTTTTAGGTGTGCGTTGGTGT-----
---TC--TGGGTCTGTAC-AAAAGGATGCCTCATCCTCCCTGATTTAGGTTTCGGTTCTGCTAGGCAGGTTCTATGTC--
-TCGTTGGTGGTGT------------------------------------------------------------------
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>SNPs
---SS---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S--
-----S--SSSS------S----S--S------------------------SS--------------S------------
----------S----------S----S------S-S--------S----S--------S--S----------------S-
-S---------------SSS-S------S--------S------S-------SS------S--------S----------
------S-S-----S---------S------SSSSSSSSSSSSSSSSS--------S--S-S-----------S----SS
---S----------S----S----------------SS-------------------S---S--S--S---SSSSS----
-----------S--S--------S-S-S-----S--SS-----SSS-------------S---S---------SS---SS
SSSS-SS----SSSS---S-------S------------SS-------------------------S-------------
-------------S-SS------S--------------S--S--S----S--------------------SS----S-SS
--SS-S------S---------S---S--------------------------------------------------S--
--------------------S-----------------------------------------S----------------S
-S--------------------------S---------------------------------------------------
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--------------S-----------------------------------------------------------------
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-----SS------------S------------------------------------------------------------
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------------------------------S----------------------------------S--------------
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----------------------------------------------------------------SS--------------
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------------------------------------------------------------------------S-------
-------S---------------S------------------------S----------S--------------------
-----------------------------------------S--------------------S-----------------
------S------S-S--------------------S-------------------------------------------
------S----S--S------S---S-S----SS-S----------------------------S-----------S---
-----------------------S--------------SSSSSSSSSSSSSSSSSSS-----------------------
--------------------------------------------------------------------------------
----------------------------------------------SS---S---SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_35
---------------CCTACGATGATGCGACGACA---------------------------------------------
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>reverse_2129
--------------------------------------------------------------------------------
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------------------------------------------------CTTACTCGGCATTGCTGGCA------------
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