>input_sequence_64842
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-------------------------------------------ACCCATCGATCTCAGCGGACGCAGAGCTTTGGAACGT
GCGATGGCGGCGGCGGGGCCGGTGGTGCTCCAGACGGACGTGCACTGCCTCGAGTGCGCCAGGAAGATCAGGAACGCCGT
CGGCAACCAGCTCGGTACGTAGTACACGGGACAGGAGTAACAACGTTCGTGCTTATATTATGCGAGCAGATCGAGTTGAT
ATGCGCGCGCACTGATCCATCTGA----------------CATGCATGCATGCGCGTACGTGCAGGGGTGGAGCGGGTGT
GGGCGTCGCCGGACACGGGGCTGGTGGTGGTGGCGGGGACGGCGGACCCGGCGGCGCTCAGGCGCCGCATCCGCCGCAAG
ATGAGGAGGCCCGTCGCCATCCTCAGCGACGGTTCGACGCCCTACGCGGGGCCGGGGCCAACCACGCCGCACTGGCACTA
CGGCACCGGCGACGCACCGCCCTCCTCAGTGCCGCCATATGGCTGGGGCACGGCGCCGCCGCCGC------ACGCCTACT
ACTCCTACCCTCCA------CCACCGCCGCCACCGCCCTCGCCGGCCGGGTACCCGTACGGCGGCTGGGCGTCCGATCCG
GACCCCTACGGTTACGGCACGCGCACCACGGTGCCCACGTGCTCCATCCTGTGATCGGTGCCGCCAGCCGGACGTTCGGC
CGGCGGCGACGTGCGTGCACGCGTGCTGCATGCATGCGCGTCCGAGATTAGGTC-GAAGAGTTTTGAATTATTTTTTTTG
AGAGAGCAACAGTTTTGAATTGAATCAGTCGATTAGTCATTTATAATGTTAGCCCA-AATGGATCGATGGACGAGTAGTC
TGGAGTGGTAATCTTTTTTGAATGTACTGCTGCCTCTGCAA----CCAGCCGCCATGAACCTACACAGTTGGCCTTTTGG
GTTTCCGCGTTCGGGATGATACCAGTATTTTTTTGGATCAATAATAAAGCGTGGGTTTCGAT------------------
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>chr5D_1_TraesCS5D01G506300
GCGTACCGTGGTGAGGCGAGAGAGAGAAGAGAGAGAGAGTAAACAAGAGAGTTGCAGGAACAAGAAAGAATAACCGGAGG
CTTCCGGAGATGGGGACAAGGCAAAGGCGCATGGTCCATGCAGACACATGTCGAACTCTAGAGGCGATCATGCTTACTAT
GCGATCTGTCGTCCGATATGTATCATCTACCATTATAATCTGAACATGACTCCTCCTATCCTCAACTCATATATGATACA
GTATGTTATTCAATACTCCTACTAGTAGTATCTACTACACTAGCTTAAATTTGGATGACAAAATGTTGATCGGTTTGGTA
AAAAGTTTCCTAGCAAGTAGTATAAGTAGTGTGGTTGGTTGCGCCAAATTTCAGACTGTATTTTCACGGCTAGTTACTCT
CTTTGTTATTTAGGAACGGAGGGAGTATAAGTAGTGTGGTTGGTTGCGCCAAATTTCAGACTGTATTTTCACGGTTAGTT
ACTCTCTTTGTTATTGATATTAATTGGAGTTTCAGATTTGTCTTAAGTCAGAAATCTTTATAAGTTAAAAAAAAATCCAA
AATACGGCACATACCTGGCATGCCCACGGGCGGTGATTATGCTTCGTTTCCGACCGAACGTGATGTAATCAATAGCGTAG
AATCGTTTTTTTTAAGTGTACAATCGTCCGGAAGAAAGAAGAAAAAAATGACCTGAAAAAGAAAGAGGGGAGGCGGTGCA
TGCGAGTGCGACGCTTACGTAACCGCCCCGCGAGCCGAGTGCCCGCGTGTGCGGAGCACAGGATCGGTATGGAATGGGGA
GAAATCAAGGAGGACATGCCATCACATCAAAGGAAACTTGGAGCTGATCTGCCGACCGACATATCAGCTTACGTTGCCGC
ACTCGATTGGCTCCGCCGATTACCATATCGCGAGCAGATTTCTTTCTCTCCCGGTGATTCCTCCTCTCCTCCCG---GCC
GCGCGCCCCTCTATAAATTCCAGGCCCATTCGCCGCGTATCACACCCATCGATCTCAGCGGACGCAGAGCTTTGGAACGT
GCGATGGCGGCGGCGGGGCCGGTGGTGCTCCAGACGGACGTGCACTGCCTCGAGTGCGCCAGGAAGATCAGGAACGCCGT
CGGCAACCAGCTCGGTACGTAGTACACGGGACAGGAGTAACAACGTTCGTGCTTATATTATGCGAGCAGATCGAGTTGAT
ATGCGCGCGCACTGATCCATCTGA----------------CATGCATGCATGCGCGTACGTGCAGGGGTGGAGCGGGTGT
GGGCGTCGCCGGACACGGGGCTGGTGGTGGTGGCGGGGACGGCGGACCCGGCGGCGCTCAGGCGCCGCATCCGCCGCAAG
ATGAGGAGGCCCGTCGCCATCCTCAGCGACGGTTCGACGCCCTACGCGGGGCCGGGGCCAACCACGCCGCACTGGCACTA
CGGCACCGGCGACGCACCGCCCTCCTCAGTGCCGCCATATGGCTGGGGCACGGCGCCGCCGCCGC------ACGCCTACT
ACTCCTACCCTCCA------CCACCGCCGCCACCGCCCTCGCCGGCCGGGTACCCGTACGGCGGCTGGGCGTCCGATCCG
GACCCCTACGGTTACGGCACGCGCACCACGGTGCCCACGTGCTCCATCCTGTGATCGGTGCCGCCAGCCGGACGTTCGGC
CGGCGGCGACGTGCGTGCACGCGTGCTGCATGCATGCGCGTCCGAGATTAGGTC-GAAGAGTTTTGAATTATTTTTTTTG
AGAGAGCAACAGTTTTGAATTGAATCAGTCGATTAGTCATTTATAATGTTAGCCCA-AATGGATCGATGGACGAGTAGTC
TGGAGTGGTAATCTTTTTTGAATGTACTGCTGCCTCTGCAA----CCAGCCGCCATGAACCTACACAGTTGGCCTTTTGG
GTTTCCGCGTTCGGGATGATACCAGTATTTTTTTGGATCAATAATAAAGCGTGGGTTTCGATTA-CTTACGTTGAATTTG
TTTCTCTTCTTATTAGTATGAACACTATTCTTTTTTGTACTTATTAATAATGTATTTTGAACCACTTATA--TAAAACTA
AAGCATTCCCCGCGTGTTGCTGTAAGAATTGGTTGATGAAAATTTGAGCTGATA----AGACGAGAACCAAAATTTAAAA
--CATATTAATTATTATATTTAATTATGTATTGTAATAAACTATTCCGTATCCAGTAACAAGATGTAGTAGATCATATTG
TGAACTTTTCTGGAGATACATCAGAATTTTCAAGATCAACGAGTG----------TGCTCAATGACCTTATGGAGCATAT
GTGGACCCATAATGAAAGCCAATGAGCTTAATGTTTGAATAGTGCACTTGGAATAAATTTTATGTTTGAACTATGTATTT
TTCGCTATGAACAAATGTTATTTACTTGTGATA--CATGTGTGTGATCGATGTACATGGATTTAATGTTTTGATATGAGT
AGTGTGGTTGGGCAGCAGGACCTTTGAGGGGTCGTCCGACACTGTTTGAGGTCGTGTCCGGACAGGCTTAC---------
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---CTAGTAAGCACCATTAAGATATTAGCTAGACAATGCACTTTAAATCTATATCTTGATATTTAATAATATTGAAACAT
ACAGAACACATGTTATATGTATATGCTAAATTAGGGGAAAGATTTTGCCAGCACCATTATATATATTTAATATATATTTT
TGTAGTTGCTAAAAAATAATTCAAAGCAAGATTTTTTCACCACACTCACAATTTAATTAGGGGAA-TATTCTTTTCGGTG
CCAAACATTACTATTGTACTATGGTATAACAAAGAACAATGCAATTAAATATTTAGCAAAAATTTGATATGATTAACTAT
GGCAACTGAGTAATAAAAAATGTACTCACTACTACTTTAGTATTGATAAAT-TTTTGAACAAGTAAAAGTATTTAGTATA
AAAGATATTTATTTTAATTCATTCCAGTTTAAAATTCTGTTTGGAAAACGTATGTGT
>chr5B_731
ACGT----------------------------------------------------------------------------
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--------------TTACGTAGCCGCCCCGCGAGCCGAGTGCGCGCGTGTGCGGAGCACAGGATCGCTATGGAATGGGGA
GAAATCAAGGAGGCCGTCCCATCACATCAAAGGAAACTTGGAGCTGATCTGCCGACCAACATATCGGCTTACGTTGCCGC
ACTCGAT--------CCGATTACCATATCGCGAGCAGATTTCTTTCTCTCCCGGTGATTCCTCCTCTCCTCCCGGCCGCC
GCGCGCCCCTCTATAAATTCCAGGCCCATTCGCCGCGTATCACACCCATCAATCTCAGCGGACGCAGAGCTTGAGAACGT
GCGATGGCGGCGGCGGGGCCGGTGGTGCTCCAGACGGACGTGCACTGCCTCGAGTGCGCCAGGAAGATCAGGAACGCCGT
CGGCAACCTCCTCGGTACGTACGTTCGTACACAGGGGTAACATGGTCGGCAAC---------------------------
-----------CTGATCCGTCTGACTGACATGCATGCATGCATGCATGCGTGCGCGTACGTGCAGGGGTGGAGCGGGTGT
GGGCGTCGCCGGACACGGGGCTGGTGGTGGTGGCGGGCACGGCGGACCCGGCGGCGCTCAGGCGCCGCATCCGCCGCAAG
ATGAGGAGGCCCGTCGCCATCCTCAGCGACGGCTCGACGCCCTACGCGGGGCCGGGGCCGACCACGCCGCACTGGCACTA
CGGCACCGGCGACGCGCCGCCCTCCTCAATGCCGCCGTATGGATGGGGCACGGCGCCGCCGCCGCCGCCGCACGCCTACT
ACTCCCACCCTCAG------CCGCCACCGCCACCGCCGCCGCCA---GGGTACCCTTACGGCGGCTGGGCGTCCGATCCG
GACCCCTACGGCTACGGAACGCGCGCCACGGTGCCCACGTGCTCCATCCTGTGATCGGTGCGGCCAGCTGCACGTTCGAC
CGGCGGCGACGTGCGTGCACGCGTGCTGCATGCATGCGCGTCCGAGATTAGATCAACAGAGTTTTGAATTTTTTTGA--G
AGAGAGCGAGAGTTTTGAGTTGAATCAGTCGATTAGTCATTTATAATGTTAGGCCA-AATGGATCGATGGACGAGTAGTC
GGGAGTGGTAATCTTTTTTGAATGTACCACTGCCTCTGCAA----CCAGCGGCCATGAACCTACACAGTTGGCCTTTTGA
GCTTTCTCGTTCCGGATGATACCAGTC---TTTTGGATCAATAATAAAGCGTCAGTTTCGATCTTCTTACGTTGAATTTG
TTTCTCTTCTTATTAGTATGAACACTATTCTTATTCGTACT------TAATGTGTTTCGAACCACTTATAGATAGACCTA
AAGCATCCCCCACGTGTTGCTGG--GAATTGGTTGATGAAAATTTGAGGTGATAAGACAGACGAGAACCAAAATTTAAAA
TACATATTAATTATTATATTTAATTATGGGTTGTAAACTACTCTGCACCCTAACAAGATA--------TACATCATATTG
TGAACTTT-CTGGAGATACATCAGAATCTTTGAGATTAACAAGTGCACGTGCAATTGCTCAATGACCTTGTGGAGCATAT
GTGGACCGGTAATGAAAGCCAATGAGTTCAATGTTTGACTTGTGCACTTGGAATAAATTTTCCGTTTGAACTATGTATTT
TTCGCTATGAACAAGTGTTATTTATGTGTGATATTCATGTGTGTGATCGACGTACATGGATTTAAGGTTTTGATATGAGT
AGTGTGGTTGTGCAACATAACATTTGAGGGGTCGTCCGACGCTGTTTGAGGTCGTGTCCGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCACTATCATAAGAGTAGCATGCACTGCCACCTAAGAA
AAAAATGATGCGCAATGCAACTAATGGTGCATTGTCACCTAAGCAAAAATATAATGTGGCACTATAATTAATGATCTGTG
AGAGAGTTCAAGTATCATATTAATGTGTAATACAGCATCATAACACATCAAATAAGAAAACTCAATTAGAGATTCTACAA
ATGAATAATTGAAGGGATACTGATACTGATACTATTATAAACCAATGTCACGTGCATGATACTAGTATTATAAACTAATA
TCACATCAAATAAGGTCTTTAGGGGTATGGGTGTTGTGAATAGCGTTAGTGTCCGGTTGGGTGAACTTAGACTAGCAACC
TGACTAGCGAGGGCCACATTGAGGGTGACATGGCATGCTTACGCGGTGGTGCTGAGATGGATGTGGATCCCACTCATTAG
TGGCTCATCTATTTCTGCATGACGTACACTATCCTAGACACGACACCTTTGTTTCCCAGGCCAGCACAAAAGAGTTAATC
ATTACATGTTGTTTGTAGTTGAACTCATGCCATGCGTGATGTGACACCTCTATATTGCTTGATGTCGCTGCTCTAGAGGA
AGACCTTGACGAGGAAGGTGTGTGAAGTAGTAGTGAGGGTTGACGATGCAACATACCCATCAAGGAGGAGTGGGGCTTCA
GTGACGAAGCAGTGGAGGTCGAACATGAGGTTGTAGTTGGGGAGGGCGGTGATAAACAGGGTGCGTTGGATGAAGCGGAG
TGTGAGGAGGGGTGTGCAAGCGTGCAAAAGGTTATTGGCTGTGGGTGCATCGATGCGGCAGGATGGCATAAGGATGAGAT
GAGGGGATATATGCCTCAATGCCATAGTGAGATGCTAGGAGCAACACAACCGTAGGGGAAATGGGGTGTTGTGGTGGAAG
GCGGCGCACATGGAGCTAATGCGGAGCTTCATTCTGACGATGGTAGGATATAAGCACATATCATGCATGTATTGTCAACA
TATTATTGAACCAAACTTGTGACACATTTTCAAAACGATTGGGTTTATACTCAAAGTTTCAATATACAAGCTTACCTAGT
ACACTAGAAAGAACCATCAAGATATTACTTAGACAATGCACTTTAAATCTACATCTTGATATTTAATAATATTGAAACAT
ACAGAACACATGTTATATGTATATGCTAAATTAGGGGAATAC-TTTGTCAGCACCATTATATATATTTAATGAAAAA-TT
TGTAATTGCTAAAAAGTAATTCAAAGCAAGATTTTTTTCAC-CACTCACAATTTAATTAGGGGAAATATTATTTTCGGTG
CCAAACATTATTATT--------GTATAACAAAGAACAATGCAATTAA-TATTTAGCAACAATTTTATATGGTTAACTAT
GACAACTGAGTAATAAAAATTGTACTCACTATTACTTTAGTATTGATAACAATTTTGAACAAGTAAAAATATTTAGTATA
AAAGATATTTATTTTAATTCATTCCGGTCTAAAATTCTGTTTGTAAAGGTGTGTGT-
>chr4A_898
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-----------------GATTACCATATCGCGAGCAGATTTCTTTCTCTCCCGGTGATTCCTCCTCTCCTCCCG---GCC
GCGCGCCCCTCTATAAATTCCACACCCATTCGCCGCATATCACACCCATCAATCTCAGCATAAGCCGAGCGACG------
GCGATGGCGGCGGCGGGGCCGGTGGTGCTCCAGACGGACGTGCACTGCCACGAGTGCGCCACCAAGATCAGGAACGCCGT
CGGCAACCTGCTCGGTACGTG-----GGACACGGGAGTAGCATCGTTCGTGCTTATAGTATT------------------
----------ACTGATCCATCTGA----------------CATGCATGC----GCGTGCGTGCAGGGGTGGAACGGGTGT
GGGCGTCGCCGGACACGGGGCTGGTGGTGGTGGCGGGCACGGCGGACCCGGCGGCGCTCAGGCGCCGCATCCGCCGCAAG
ATGAGGAGGCCCGTCGCCATCCTCAGCGACGGCTCGACGCCCTACGCGGGGCCGACC---ACCACGCCGCACTGGCACTA
CGGCGCCGGCGACGCGCCGCCCTCCTCAATGCCGCCGTATGGCTGGGGCACAGCGCCTCCGCAGC------ACGCCTACT
ACTCCCACCCGCAGCGGCCACCGCCACCGCCACCGCCGCCGGCGGCGGGGTACCCTTACGGCGGTTGGGCGTCCGATCCG
GACCCCTATGGCTACGGCACGCGCGCCACGGTGCCCACGTGCTCCATCCTGTGATCGGTGCGCCCAGCCGGACGTTCGGC
CGGCGGCGACGGGCGTGCACGCGTGCTGCATGCATGCGCGTCCGAGATTAGATC-AAAGAGCTTTGAACTTTGTTTT--G
A------GAGAGTTTTGAATTGAATCAGTCGATTAGTCACC--TAATGTTAGGCTCCAATGGATCGATGGAAGAGTAGCA
GGGAGTGGTAATCTTTTTTGAATGTACCGCTGCCTCTGCATGCATCCAGCCGCCATGAGCCTACACAGTT----------
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>SNPs
S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS-------S--------------------S-----------------------S-------------
-------------S-S-S---------------------------------------S-------S--------------
-------SSSSSSSS-----------------------------------------------------------------
--------------------------------------------------S---------------------S-------
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--------S------------SSSSSS-SS------------S--------------S---SSSSSSSSSSSSSSSSSSS
SSSSSSSSSS---------------------------------------S------------------------------
-------------------------------------S------------------------------------------
--------------------------------S--------------------------S--------------------
---------------S------------S-------S-------------------------------------------
-----S------SS--------S--S-----------SS-------S--------S------------------------
-----------S------------S------------------------------------S------------------
---------------------------------------------------S---S--------------S------SS-
-------S-S------------------------------------------S---------------------------
S--------------------------S---------------------------------------------------S
-S--S-S-----S-------------SSSS----------------------SS--------SS----------------
--------------------------------S--S-----SSSSSS------S---S----------------S-S---
------S----S----------SSS-----------------------S-------------------------------
----------------------------SS------SSS---S-S-SSSS-SSSSSS-S-SSSSSSSS--S---------
--------S------------------S--SS----S---S----------------------------S----------
-------SS-----------------S-S---------S-S--------------------SS-----------------
--------------S---------SS------------------------S--------------S--------------
----------S---S--SS--S------------------S-------------------SSSSSSSSSSS---------
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-------S---S-----S---------SS----------------------S----------------------------
---------------------------------------SSSS----S-----------------------SS-S-SS--
----S----------S---------------------SSS-S----------------------------S---------
----------S----SSSSSSSS-------------------------S----------S-----S-----S--------
-S-----------------S-----------S-----------------SS-----------------S-----------
-------------------------S--S--------------S---SSSSSSSSSS
>forward_626
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----------------------------------------------TTTCCGACCGAACGTGATGT--------------
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>reverse_1927
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------GCGTTCGGGATGATACCAGT------------------------------------------------------
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>forward_716
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--------------------------------------------------------AAAAGAAAGAGGGGAGGCGG----
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>reverse_2521
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----------------------------------------ACTGTTTGAGGTCGTGTCCG--------------------
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