>input_sequence_64841
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--------------------------------------------------------ATGCCGCGCACGACGCCGTCGAGC
CCGCTGTCCCGCGCGACGCCGCCGCGCTCCCCGACGGCGGCTAGCCGCCTGGCTGTCGCGCCGGCGTCCCCGACCACCCC
GCAGTGCGCCATCCCGGCCTCGCCGCGCACGCCGCCGGCGCCGTCCAGGGCGTCCACCCCGCCGCCGACCACGCCGCGCA
CGCCGCGCCCTGAGATCACGCTCAAAGAGCCGTCGTCGGCGAATGAGAAGCGCGCGCCCGCGGCCGTCCGGGGCCCGCCG
TCGCGCGCGCTGCGCGCCATCCGCGCAATGCTCCGCTCCTTCCCCATCATCGCGCCGGCCGCGTGCCGCCCGGCGTCGGC
CCTCCCCAGGCGCCACGGCAAGCCGCACGACGGCCACGCCGGCGGCCGCGCGCGCGTCACCGGCACCTTCTACGGCCACC
GCCGCGCCCGCATCGTGCTCGCCGTGCAGGAGCGGCCCGGCAGCCTCCCCACCCTCGTCCTCGAGCTCGGCGTGCTCACG
GGGAAGCTCATGCAGGAGATCTCCGCGGGCGGCCACGTCCGCATCGCCCTAGAGTGCGAGAAGAAGTCCAAGAAGTCGCC
CGACGCAGGCGAAGGCGGCGGGAGCGTCAGCCTGCTGGAGGAGGCGATGTGGACGGCGTACGTCAACGGCCGGCGCGTTG
GGTACGCGGTCAGGCGGGAGGCCACGGACGGCGACCTCGCGGTCATGCAGCTGCTGAGCACCGTGTCGGTGGGCGCCGGC
GTGCTGCCCGGGGACGTGGTGGACGAGCCGCCCGGCGGGGCGGCGGATGCGGACGGCGAGGTGGCGTACATGCGCGCGGG
GTTCGACAGGGTCACCGGGAGCAAGGACTCGGAGTCGTTCTACATGGTCAGCCCGGACGGGGACGGCGGCGCCGGCGCCG
GCGGTGGCACGGAGCTCAGCATTTTCTTTGTCAGGGTGTAG---------------------------------------
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>chr5D_1_TraesCS5D01G479800
TATTGTGACTTGTGGGCATGCGGAATTTGGACTCTGACAAACTGGCAACATGTATCTGTATCAGCCAATGCTGTAGAGCC
TTTGAAAAAAAGG-TGTATGGTGTTGAATAATATTCAAAGCAGGAGATTTATGTCCATGTGATTTTATGACTTCACTGCC
GCTAAATTTGTTGAATATGTAGCCCCCAATTTGTCGTTCAATCAATCATGTTC---------------------------
------------GCTCTGATATACCACCAAACAGTTT----------------------------TGTTTTTTT-AGCTC
TGTCACTATTGTTTCAGGGAAAGAGATCGAACACACCGATTCCATTCATCTGAGGGGTTACATATACAGGGGAGCAGCGG
GCACTTGAGCCACGATGGAGATCGTGGAGTGGCCATGCTCGAGAGGTGGAGGGACGTGTGTGCGTAAGGGAAAACTGCAC
ACACGTACGCTATACTAGCCTGATGTAGAGACTACGTACAATACTCACACACACATATACATGTAGCTTAACAACTATGT
TTCAACTGTTCCGGGGTATAACAAAATGAAGATGTTTTTCTTCT-ATGGAACAAAATGAAGATGTTTGCGATACCAGGAA
C-AAAGTCTAGTATTCTCAAAAAAAAAAAGGAACAAAGTCTAGTAGAGAAAC---ATATCCATCTAGTCATTGTCA----
--ATATACCAACGCAATGC-AAGTGGGCTGCCACGAACAAACGAAATA---AGATACTCTATCAGAAGTGATGATGGATG
TCCTCGTCACCACATCCTGCGGCGGTCAAACCGCAGATTGCAGCATGAACTAATCAGCACCAAAATCCTCGGCGCTCATG
TCTGCTATC--------AGTACGTGTGTCGGTGTAATGCCACCACGTCGTGCACGCTACACCGCCTCGAACCAGCGTGCA
TGCCGTCACGTCGCGCTAGCTCGGGGGTTAAGCTTAAAACACTCCGAGGACTCGCTGCCGTCGAGCTCCTAGTCCCAGGG
TCTCTCTCTG----CCGCCACCTCTTTGGTTCCCCCGCGCCGCGGTTCGCCGGACCATGCCGCGCACGACGCCGTCGAGC
CCGCTGTCCCGCGCGACGCCGCCGCGCTCCCCGACGGCGGCTAGCCGCCTGGCTGTCGCGCCGGCGTCCCCGACCACCCC
GCAGTGCGCCATCCCGGCCTCGCCGCGCACGCCGCCGGCGCCGTCCAGGGCGTCCACCCCGCCGCCGACCACGCCGCGCA
CGCCGCGCCCTGAGATCACGCTCAAAGAGCCGTCGTCGGCGAATGAGAAGCGCGCGCCCGCGGCCGTCCGGGGCCCGCCG
TCGCGCGCGCTGCGCGCCATCCGCGCAATGCTCCGCTCCTTCCCCATCATCGCGCCGGCCGCGTGCCGCCCGGCGTCGGC
CCTCCCCAGGCGCCACGGCAAGCCGCACGACGGCCACGCCGGCGGCCGCGCGCGCGTCACCGGCACCTTCTACGGCCACC
GCCGCGCCCGCATCGTGCTCGCCGTGCAGGAGCGGCCCGGCAGCCTCCCCACCCTCGTCCTCGAGCTCGGCGTGCTCACG
GGGAAGCTCATGCAGGAGATCTCCGCGGGCGGCCACGTCCGCATCGCCCTAGAGTGCGAGAAGAAGTCCAAGAAGTCGCC
CGACGCAGGCGAAGGCGGCGGGAGCGTCAGCCTGCTGGAGGAGGCGATGTGGACGGCGTACGTCAACGGCCGGCGCGTTG
GGTACGCGGTCAGGCGGGAGGCCACGGACGGCGACCTCGCGGTCATGCAGCTGCTGAGCACCGTGTCGGTGGGCGCCGGC
GTGCTGCCCGGGGACGTGGTGGACGAGCCGCCCGGCGGGGCGGCGGATGCGGACGGCGAGGTGGCGTACATGCGCGCGGG
GTTCGACAGGGTCACCGGGAGCAAGGACTCGGAGTCGTTCTACATGGTCAGCCCGGACGGGGACGGCGGCGCCGGCGCCG
GCGGTGGCACGGAGCTCAGCATTTTCTTTGTCAGGGTGTAGACTGTAGAGGGAGACCGCCTTGCCGTTGCCGGCGGTGAG
AGGTTAGCTCTGTCGTTAGTCGTCGTTGTTTCTTTT----TTGGAAGACGTGGCTCCCATCGCTGTAACAAGTGTGTGAC
GCTGTATTTGTGTTGGTGCAGTGCATATCTGTGTGACCGCGAACAATCTTGTGTGTATAGAC-TGTGTAAACGGAATCTA
TACAAAGAGAAATCATAATCTTATAAATTCCTCCGAAGACAACTG-ATTCTCCGTGAACAATACTCCCTCCGTCTCAAAA
TGTAAGATGTTTTTTAGGGTAAACTAG-CTACAAAAATGTCTTATATTTT--GAGATGGAGGTAGTACTTGATTGCGGTT
AAGGGCCTCTTTGATTCACAAGATTCTACGAATGCAAAAATAGGAAAACAAAAGGGTTATAATATTTTGTCTATTTGAAT
CTTATAGCATTTTTTATTTTATTTTTGCGGGAAAAATCCTATAGTAGTTTAGGTTTAGGATGGAATGATTCAATCATAAG
AATCAAATGATCAACATAACAATTATTCATAAAGATTGTAATCTTTTAGAATTCATATAAAATCATATGAACCGAAGAGG
CGGTAAGTATTGTATCGGTATCTGATGTTAGTTGTTGTGTGCTTATGTAACTCTTTTGTGTAGTGTTTTGCTGATTCTCT
GTGCCTAAAAATTTCCTAGTGTTGTGTATTTTGCTGATTCTAGGTCACCTAATGATTTGATAGTTCTCAGACGCAATGAG
AGTTGTCGATCAGACATCAAGATCCATGTAATTCATACTAGTAGAATGCCTATGTGTTGCTACTAGCTATAATGGATATA
AATGAATCAAATAAATGATTAAAATCATTTCCAAGGTCGAAGCTCATTTCTCCCTATTTATAGGCATGTTCGAACAGTCA
GGACTTCCCAAATCCAACTCATATGTTGAAGGATATGCGGTTGTCCAGACTATATATCATGTTATCTCTGTTGGAAATAT
GCCCTAGAGG
>chr5A_1
TATTGTGACTTGTGGGCATGCGGAATTTGGACTCTGACAAACTGGCAACATGTATCTGTATCAGCCAATGCTGTAGAGCC
TTT-AAAAAAACG-TGTATGGTGTTGAATAATATTCAAAGCAGGAG----------ATGTGGTTTCATGACTTCACTGCC
GCTAAATTTGTTGAATATGTAGCCCCCAATTTGTCGTTCAATCAATCATATTC---------------------------
------------GCTCTGATATACCACCAGACAGTTT----------------------------TGTTTTTTTGAGCCC
TGTCACT-------------------------------------------------------------------------
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----------------------------------------------------------------------------ATGT
TTCAACTGTTCCGGGGTATAACAGAATGAAGATGTTCTTTTTCTGATGGAACAAAATGAAGATGTTTGCGATACCAGGAA
C-AAAG--------------------------------TCCAGTAGAGAAATATTATATCCATCGAGTCATCTGTCAATA
TGATATATCGACGCAATGC-AAGTGGGCTGCCACGAACAAACGAAATACTAAGATACTCTATCAGAAGTGATGATGGATG
TCCTCGTCACCACATCATGCGGCGGTCAAACCGCAGATTGCAGCATGAACTAATCAGCGCCAAAATCCTTCCCTGCTCCT
GGCTGGT-------ATGAGTACGTGTCTCGGTGTAATGCCACCACGTCGTGCGCGCTCC---------AACCAGCGTGCA
TGCCGTCACGTCGCGCTAGCTCGGGCGTTCAGCTTAAAACACTTCGAGGACTCGCTGCCGTCGAGCTCCTAGGGTC----
TCTCTCTCGG----CCACCTCCTCCTTGGGTTCCCGCGCCCCAGCTCGCCACG-CCATGCCGCGCACGACACCGTCGAGC
CCGCTGACG---GCGACGCCGCCGCGCTCCCCGACGGCCGCCAGCCGCCTGGCCGTCGCCCCGGCGTCCCCGACCACCCC
GCAGTGCGCCATCCCGGCCTCGCCGCGCACGCCCCCGGCGCCGTCCAGGGCGTCCACCCCGCCGCCGACCACGCCGCGCA
CGCCGCGCCCGGAGATCACGCTCAAAGAGCCGTCGTCCACGCACGAGAAGCGCGCGCCCGCGGCCGTCCGCGGCCCGCCG
TCACGCGCGCTCCGCGCCATCCGCGCGCTGCTCCGTTCCTTCCCCATCATCGCGCCGGCAGCGTGCCGCCCGGCGTCGGC
CCTACCCAGGCGCCATGGCAAGCCGCACGACGGCCACGCCGGCGGCCGCGCGCGCGTCACCGGCACCTTCTACGGCCACC
GCCGCGCCCGCATCGCGCTCGCCGTGCAGGAGCGGCCCGGCAGCCTCCCCACCCTGGTCCTCGAGCTCGGCGTGCTCACG
GGGAAGCTCATGCAGGAGATCTCCGCCGGGGGCCACGTCCGCATCGCCCTCGAGTGCGAGAAGAAGTCCAAGAAGTCGCC
CGACGCCGGCGAAGGCGGCGGGAGCGTCAGCCTGCTGGAGGAGGCGATGTGGACGGCCTACGTCAACGGCCGGCGCGTCG
GGTACGCGGTCAGGCGGGAGGCCACGGACGGCGACCTCGCGGTCATGCAGCTGCTGAGCACCGTGTCGGTCGGCGCCGGC
GTGCTGCCCGGGGACGTGGTGGACGAGCCGCCCGGCGGGGCGGCGGACGCGGACGGCGAGGTGGCGTACATGCGCGCGGG
GTTCGACAGGGTCACCGGGAGCAAGGACTCGGAGTCGTTCTACATGGTCAGCCCGGACGGGGACGGCGGCGCCGGCGCCG
GCGGTGGCACGGAGCTGAGCATTTTCTTTGTCAGGGTGTAGA-------GGGAGACCGCGTTGCCGTTGCCGGCGGTAGG
AGTT----------GTTAGTCGTCGTTGTTTCTTTTCTTTTCGGCAGACGTGGCTACCTTCG-TGTAACAAGTGTGTGAC
GCTGTGTTTGTGTTGGTGCATTAT-----TGTGTGACCGCGAACAATCTTGTATGTATCGACTTGTGTAAACGGAATCTA
TACA--GAGAAATCATCATCCTACAAATTCCACCGAAGATAACTGGATTCTCCATGAACAATACTCCCTCCGTTCACAAA
TGTAAGATGTT---------------------------------------------------------------------
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>chr5B_10
---------TTGTGAGCATGCGGAATTCTGACTCTGACAAACTGGCAACATGTATCTGTATCAGCCGATGCCGTAGAGCC
TTT-TAAAAAATTATGTATGGTGTTGAATAATATTGAAAGCAGGAATTTTTTGTGCATGTGGTTTGATGGCTTCACTGCT
GCTG-ATTTGTTGATTATGGAGCCCCCAATTTGTCGTTCATTCAACCACACTTATTTATTTATTTTTTGCGGGTGTTCAT
CCAACCACACTTGCTCTGATATACCACCCGCTCCACACAGTTTTGTTTTTCTTCTCTATTCTGTCTGTTTTTTT-AGCTC
TGTCACTATCTTCCAAGATATAATAATCGATCCCCTCTAAAAGAGCATGATAATTAATTCTTACAGTGATTCAGGATG--
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---AACTGTTCCGGGGTATAACAAAACGAAAT------------------------------TGTTTGAGGTACCAGGAA
CAAAAG--------------------------------TCCAGTAGAGAAAC---ATATCCATCGAGTCATTGTCA----
--ATATACCGACGCAATGCAAAGTGGGCTGCCACGAACAAACCAAATA---AGATACTCTATCGGAAGTGATGATGGATG
TCCTCGTCACCCAATCATGCGGTGGTCAAACCGCAGATTGCAGCATGAACTAATCAGCACCAAAATCCTCGGCGCTCATG
GCTGCCATGAGCCCATGAGTACGTGTCTCGGTGTAATGCCACCACGTCGTGCACGGTGCACCGCCTCGAACCAGCGTGCA
TGCCGTCACGTCGCGCTAGCTCGGGGGTTAAGCTTAAAACACCCCGAGGGCTCGCCGCGGTCGAGCTCCTAGGGTC----
TCCCTCTACCGCCACCGCCACCTCTTTGGTTCCCCCACGCCGTGGTTTGCCGGACCATGCCGCGCACGACGCCGTCGAGC
CCGCTGTCCCGCGCGACGCCGCCGCGCTCCCCGACGGCCGCGAGCCGCCTGGCCGTCGCGCCGGCGTCCCCGACCACCCC
GCAGTGCGCCATCCCGGCCTCGCCGCGCACGCCGCCCGCGCCGTCCAGGGCGTCCACCCCGCCGCCGACCACGCCGCGCA
CGCCGCGTCCCGAGATCACGCTCAAAGAGCCATCGTCCACGCACGAGAAGCGCGCCCCCGCGGCCGTCAGGGGCCCGCCG
TCGCGCGCGCTGCGCGCCATCCGCGCGCTGCTCCGCTCCTTGCCCATCATCGCGCCGGCCGCGTGCCGCCCGGCGTCCGC
GCTCCCCAGGCGCCACGGCAAGCCGCACGACGGGCACGCCGGCGGCCGCGCGCGCGTCACCGGCACCTTCTTCGGTCACC
GCCGCGCCCGGATCGCGCTCGCCGTGCAGGAGCGGCCCGGCAGCCTCCCCACGCTGGTCCTCGAGCTCGGCGTGCTCACG
GGGAAGCTCATGCAGGAGATCTCCGCCGGGGGGCACGTCCGCATCGCCCTCGAGTGCGAGAAGAAGTCCAAGAAGTCGCC
CGACGCCGGCGAAGGCGGCGGGAGCGTCAGCCTGCTGGAGGAGGCGATGTGGACGGCGTACGTCAACGGCCGGCGCGTCG
GGTACGCGGTCAGGCGGGAGGCCACGGACGGCGACCTCGCGGTCATGCAGCTGCTGAGCACCGTGTCGGTGGGCGCCGGC
GTGCTGCCCGGGGACGTGGTGGACGAGCCGCCCGGCGGGGCGGCGGACGCGGACGGCGAGGTGGCGTACATGCGCGCGGG
GTTCGACAGGGTCACCGGGAGCAAGGACTCGGAGTCGTTCTACATGGTCAGCCCGGACGGGGACGGCGGCGCCGGCGCCG
GCGGTGGCACGGAGCTGAGCATTTTCTTTGTCAGGGTGTAGA-------GGGAGACCGCCTTGCCGTCGCCGGCGGTGAG
AG-TTAGCTCTGTCGTTAGTCGTCGTTGCTTCTTTTCTTTTTGGAAGACGTGGGTACCTTCGCTGTAACAAGTGTGTGAC
GCTGTA-TTGTGTTGGTGCAGT------CTGTGTGACCGCGAACAATCTTGTGTGTATGGAC-TGTGTAAACGGAATCTA
TACATGGAGAAATCATAATCTTATAAATTCCTCCGAAGACAACTG-ATTCTCCGTGAACAATACTCCCCC--TCTCAAAA
TGTAAGACGTTTTTTAGCCTAAATTAGCCTACAAAAACGTCTTATATTTTGAGAGATGGAGGTAGTAGTTGATTGCGGTT
AAGGGCCTCTCTAATTCACAAGATTCTAGGAGTGCAAAGATAGGAAAACAAAAGGGTTACAATATTTCGTCTATTTGAAT
CTTATAGCATTTTTTATTTTATTTTTGCGGGAGAAATCCTGTAGTATTTTAGGTT-------------------------
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>SNPs
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---S-------S----------------------------------S---S---S------S---S--------------
-------------------------------------------------S------------------------------
-----------------------------S--------------------------------------------------
---------SS-SSS--SS-S-SSS-----S-S-SS-S-SSSS-SSSSSS-S-SSSS--SSSSSSSSSSSSS--S-SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----
------------------------------------S--S----------------------------------------
------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-----------------------S---------------
---------S----------------------------------------------------------------------
----------------S---------------------------------------------------------------
S----S--S-----------------S------------------------------S----------------------
------------------------------------------------------------------------SSS-SSSS
--------S---------------------------S-----S----S--------------------------------
--------------------------------------S--S-----------S--------------------------
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----------S--------------------------SS--S-S------------------------------------
--------------------------SS----------------------------------------------------
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---------------S---------------------------------------S------------------------
--------------------------S--S--------------------S-----------------------------
------S-----------------------------------------------------------------------S-
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-----------------------------------------------S--------------------------------
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----------------S-------------------------SSSSSSS-------------------------------
--S----------------------------------------------------S--S---------------------
----------------------SSSSSS------------------------------S---------------------
----SS--------------------------------------------------------------------------
-----------------SS----S-------------S-----------------------------S------------
----------S-S---------------S--S------S--------------------S-------S------------
--------------------------------S-------S-----S--------SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS
>forward_490
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----------------------------------------------------------------------AAAACTGCAC
ACACGTACGC----------------------------------------------------------------------
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>reverse_2187
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--------------------------ATCTGTGTGACCGCGAACAA----------------------------------
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