>input_sequence_64822
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-------------------------------------------------------------------------------A
TGTGCGAGCCATGCCACCCGTCGCTGCCGCAGGTCGGCAACCTCTTCTCACCAAGCGCGTCGCCCACATTCCACGGCGTC
CACAACAACGATCCTGTTTGCACCACACCCTACAGGAAGACGGCTCACGGCTGCTCCTTCCACTTCTCTTCGGTCACCGG
GTACCTCTCGCGCGACACCTTCCACCTCCGCACCGGCCGATCGGGCGCGATCAGGGAGTCTATTCCTCGTGTTGTGTTTG
GTTGCGCACACTCGTCCACTGGGTTCCACAATGACAACACCCTTGATGGGGTGCTCTCCTTGAGCCACCTGCCACTCTCG
CTCCTGACACAACTTGGTGGGCATGCCAGTGGGAGGTTCTCCTACTGCCTCCCCCTGCCCACCGTGCACAATCCCCATGG
CTCCCTCTTTCTCGGCGCCAACGTCCCAAGCCCTCCGCCGCATGCCCACACGACCAACCTCGTCATACGTCCCGGCGTCT
CGGGCTACCACCTCAACCTCGTCGGCATCACCCTAGGGTACAAGCGTCTCAAGATCGACAAGCGCGTCTTCGACGGCCAC
AGTTGCAGCATCAACCCAGCGGAGACCATCACACATTTCGCGGAGCCGATATACCTTGTCGTGGAAAAAGCATTGGTGGC
GCGCATGAAGGAGCTAGGGTCGGACCCGGTGAAGGGGCCACCGGGCGGCCCGCTTTGGTTTGACCGGATGTACAAATCGG
TGAAGGAGCAGCTCCCCAACATGGCGTTTCACTTTGAGGGCGGCGCCGAGCTGTGGTTCACATCGGATCGGCTGTTTGAG
GTGCACGGCATGAACGCAAGGTTCATGGTCGCCGGCCGTGGGTACCGCCGGACGGTGATTGGCGCCGCACAGCAGGTGAA
TACGCGGTTCACGTTCGACGTCCCCCGGGGGAAGCTGTCCTTCGTGTCGGAGGTGTGCGACTGA----------------
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>chr4A_1_TraesCS4A01G328100
AAATAAAAAAAGAAAAAGGGCTGTAGTGGGCCGACCCACTAGGAGGTTTGTCCGTCTTGCACGCGGCCAGATGACGCGCC
CCTCTGTTTGCTCTGCACATGTGCTGGGGTAAATAAAAAACATAAAACATAATATCAGTTTCCCACTAAATATAATCTCA
GTTTCATGCTAAATAATATAAGGTCAGTTTAAACCTTAATCTCAAACCAATCACTAAAAAGCTCAGAATAGGAGTCACTC
TGTGCACTTTAAGACTGGAACAC------ACAGAGAACTGATATCCTTGAGGAATGCCTTTTTTGTTGTTGTTGGAGATG
ATAGATATATGTTTTGGATTAAAGTCACTAGTTATTTCTTGGATATCATTCCATTAATGCGAAGATCACATTATATTTGT
AGACCAACAAAAGGCT--------CATAAATGAAACGAATCCATATTCAGGAATGTGAAGATAACATTAAATTTATAGAC
CAACAAAAGGCGTTCTAGCCCATAGATGAAACAAATCCATATTCAGGAATGCGAAGATCACATTGAATTTATAGACCGAC
AAAAGGCATTCTAGCCCATAAATTAAAA-AATCCATGTTGAGGATACTAACAAAATCCTTTAGAACAACTTTGTCCCATT
TAATGAAGTGGCATCCAAGAAGAAAGTCTATACAAGAACATCCAATATAAAAGGGTGCCAGA----------TCCATCGA
GGAATAAGAAGCACACAAATAAGCAACCATGTTCAAATTACTCTCAACACTTGTTCTCCCAGTTTTCTTCCTGAGCTTTG
CCATCGCATGGGCGAATCCGAGCAACACGACGGGCCTAAGCTTCCAGCTAGTCGCCCTTAGT--------------CGGG
CATGCCAGCAATGGCTCGGCCTACACCACCGAGGACCTGCGTCTGCCGATTTCAACATCGGCCCGGTATGCTTACGGCGT
GTTTGTGTCGCTCGGCACCGGGGAAGGCACTAGGCTGAAGGTCCTCGGCCTCGACACCGAAATCAGCACATCGTGGGTGA
TGTGCGAGCCATGCCACCCGTCGCTGCCGCAGGTCGGCAACCTCTTCTCACCAAGCGCGTCGCCCACATTCCACGGCGTC
CACAACAACGATCCTGTTTGCACCACACCCTACAGGAAGACGGCTCACGGCTGCTCCTTCCACTTCTCTTCGGTCACCGG
GTACCTCTCGCGCGACACCTTCCACCTCCGCACCGGCCGATCGGGCGCGATCAGGGAGTCTATTCCTCGTGTTGTGTTTG
GTTGCGCACACTCGTCCACTGGGTTCCACAATGACAACACCCTTGATGGGGTGCTCTCCTTGAGCCACCTGCCACTCTCG
CTCCTGACACAACTTGGTGGGCATGCCAGTGGGAGGTTCTCCTACTGCCTCCCCCTGCCCACCGTGCACAATCCCCATGG
CTCCCTCTTTCTCGGCGCCAACGTCCCAAGCCCTCCGCCGCATGCCCACACGACCAACCTCGTCATACGTCCCGGCGTCT
CGGGCTACCACCTCAACCTCGTCGGCATCACCCTAGGGTACAAGCGTCTCAAGATCGACAAGCGCGTCTTCGACGGCCAC
AGTTGCAGCATCAACCCAGCGGAGACCATCACACATTTCGCGGAGCCGATATACCTTGTCGTGGAAAAAGCATTGGTGGC
GCGCATGAAGGAGCTAGGGTCGGACCCGGTGAAGGGGCCACCGGGCGGCCCGCTTTGGTTTGACCGGATGTACAAATCGG
TGAAGGAGCAGCTCCCCAACATGGCGTTTCACTTTGAGGGCGGCGCCGAGCTGTGGTTCACATCGGATCGGCTGTTTGAG
GTGCACGGCATGAACGCAAGGTTCATGGTCGCCGGCCGTGGGTACCGCCGGACGGTGATTGGCGCCGCACAGCAGGTGAA
TACGCGGTTCACGTTCGACGTCCCCCGGGGGAAGCTGTCCTTCGTGTCGGAGGTGTGCGACTGAGACGGGGCAG-----G
CAGCCTAGCTTTGTTCTTGCTGTATTTCAGGAAATAATCGCCAATTTGCATTCATATATCATATTGCCGAATGGCCAGTG
TTATTTCCAACTTTTTTTTTGAACACAGTGTCATTTCCAACTTGAAGCACGTTCGTATGGACGTTTTGTTAAATTTA---
AAAGATCTGCAAGAATATGCAGCTATGTA---------------------------------------------------
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------------------------------------------------GGCACTATTGTTGATCATCATTTGATCGTCAA
ATTGGCACTAGCGGAATGTCTCCCTGAGGTCAAGGTTCGCTACCTGCGCAGTACTGCCATATATAATGCTCTAGATGCAT
TGATCATTAATTATTAGTTGATCCACGCAAAAAAAGA-------------------------------AGCTATTATTGA
TCATGATTGACAAGTTTAACTGTATAATAATTTTTTTTGTAAGAGTTGGCCTAGTGGAGTAGCTGGGTTGTGCAAATCTT
AACCTGCTTGCCCCGAGCACTATACTTGTCGTGTAGGGAAAGTGG----------------------TGGTTGCACCCAC
ACAATGAACAGTAAATTTGAAAAAAATAGTAAAAAATCAAAAAAGATTCTGAAACTTCGTGGATGCGATCATGACCAAAT
GTTTAAGGAGCTTGCAAAGTTTGGTCTCCAAAAAAAACATCGAATGTTCTCCATACAAATGACGCTCTGCACCCAAGTTA
TTGTTCACATGTTTTCAGCATAAACTTTGTTTTCTTTTTGTACAGAGCTCCCCGGATCTCATTTCCCCACCAAGTTTTGC
AAGCACCTAAAACATTTGGTCATAATCACATAAACAAAGTTTCAGATTTTCTGAAAATGTTTTGCTAAGTTTTGATCATG
GATGCACCGGCGGTGCAATGTCCCTGGGTGCACAAAAACCAAACTCTGTCGTCCATAAATACACCGCTGATCTCTCTGTT
CACAGCACACAAGTAAACAACCCAGCTTCGATCAATGACAGCTCTAAAACAGCAGTAGCTACAAATACAATTCTCAATC-
AAAAAGGAAAGGTGTAATATGTATT
>chr5D_202
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-----------------------------------------TCAAATCAATCACTAAGAAAAACAGAATAAAAGTCGATC
TGTACACTTTAAGACTGCAACAACCATATACAGATAACTGATATCCTTGATGAATGTCCTTTTTTGTTGTTCGCA--ATG
ATAGATGTATTTTTTGGATTGAAGTCACTAGTTCCTTCTTGGATATCACTCCATTAATGCGAAGATCACATTAAATTTAT
ATACCAACAAAAGGCATCCTAGCCCATAAATGAAACGAATCCATATTCAGGAATGCGAAGATAACATTAAATTTATAGAC
CAACAAAAGGCATTCTAGCCCATAGATGAAACAAATCCATATTCAGGAATGCGAAGATCACATTAAATTTACAGACCAAC
AAAAGGCATTCTAGCCCATAAATGAAACGAATCCATGTTGAGGATACTAACAAAATCCTTTAGAACAA-TTTGTCCCATT
TAATGGAGTGGCATCCAAGCAGAAAATCTATACAAGAACATCCAATATAAAAGGGTGTCA-A----------TCCATCCA
GGAATAAGAAGCACAAAAATAAGCAACCATGTTCAAATTACTTTCAACACTTGTTCTCCCAGTTTTCTTCCTGAGCTTTG
CCATCGCATGGGCGAATCCGAGCAACACGACGGGCCTAAGCTTCCAAATAGTCGCCCTTAGTCGGGCGGCCCCTGACGGG
CATGCCAGCAATGGCTCGGCCTACACCACCGAGGACGTGCGTCTGCCGATTTCAACATCGGCCCGGTATACTTACGGCGT
GTTCGTGTTGCTCGGCACCGGGGAAGGCACCAGGCTGAAGGTCCTCGGCCTCGACACCGAAATCAGCACATCGTGGGTGA
TGTGCGAGCCGTGCCACCCGTCGCCGCCGCAGGTCGGCAACCTCTTCTCACCAAGCGCGTCGCCCACATTCCATGGCGTC
CACAACAACGATCCGGTTTGCATCACACCCTACCGGAAGACGGCTCACGGCTGCTCCTTCCACTTCTCTTCGATCACCGG
GTACCTCTCGCGCGACACCTTCCACCTCCGCACCGGCCGAGCGGGCGCGGTCAGGGAGTCTATTCCTCGTGTTGTGTTCG
GTTGCGCACACTCGTCGACCGGGTTCCACAATGACAACACCCTTGGCGGGGTGCTGTCCTTGAGCCACCTGCCGCTCTCG
CTCCTGACACAACTTGGTGGGCACGCCGGCGGGAGGTTCTCCTACTGCCTCCCCATGCCCACCGTGCACAATCCCCATG-
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--------------CCCAACATGGCGTTTCACTTTGAGGGCGGGGCCGAGCTGTGGTTCATATCGGATCGGCTGTTTGAG
GTGCACGGCATGAATGCACGGTTCATGGTCGCGGGCCGTGGGTACCGCCGGACGGTGATTGGCGCGGCGCAGCAGGTGAA
TACGCGGTTCACGTTCGACGTCCCCCGCGGGAAGCTGTCCTTCGTGTCGGAGGTGTGCGACTGAGATGCATGTGGCAGCG
CAGCCTAGCTTTGTTCTTGTTGTATTTCAGAAAATAATTGCCAATTTGCATTCCTATATCATATTGCCGAATGAG-----
-------------------------TAGTGTTATTTCCAACTTGAAGTACGTTCGTATGGACGTTTTGTTAAATTTA---
AAAGATATGCAAGAATATGCAGCTATGTAGCGGAAATCCAACTCGGTGTCGAGGCTCATCTGCTCCCACTCAGAAAAAAT
ATCAAAATAAATACTAGAAAAATTCAAAAAATCCAATTTTTTTTGTGGGTGGTAGATAATTTGATGCGTGAGGTCCGCTC
TAAATTTCAACTCATTCGGACATCTGAGCAACTCTCGGCAAAAAAGACAAATCAGGTCAGAACAGTGCATGAACAGTAAA
CATTTTTACCGACCCCGATTTTGTCTTTTTTGCCGAGAGCTGCTCAGATGTTCAAATGCGTTGAAATTTGGAGCGGACCT
CACGCATCAAATTATCTACCACCCAAAAAAATTAGAATATTTTGGTTTTTTCTAGTATTTGTTTTGATTTTTTTTCTGAG
AGGAGGTGCAGATGAGCCCGAGAGCAGAAACTCCGCGTCCGCTATGTAGGCACTATTGT---------------------
------------GGAATGTCTCCCTGAGGTCACGGTTCGCTACCTGCGCAGTACTGCCATATA--ATGCTCTCGATGCCT
TGATCATTAATTATTAGTTGATCCATGCAAAAACAAAAGAAGCTATTATTGATCTTTTTTTTTGCGGGAGCTATTATTGA
TCATGATCGACAAGTTTAACTATATACTAAATTTTGTGTG-AGGGTTGGCCTAGTCGAGTCGCTGGGTTGTGCAAATCTT
TACCTGCTTGCCCCGAGCACTATACTTGTCGTGCAGGAAAAGTAGTGGCTGCACCCTGCACCCAACTTGGGTGCACCCAC
ACAACAAACAGTAAATTTGAAAAAAATAAAAAAATAAAAATTGAAACAGCGGTGATTATGAG-------------CAAAT
GTTTTAGGAGCTGGCAAAGTTTGGTCACCAAAAACGTCAAAGTTT------------------GCTCTGCACCGAAGTTA
CTGTTCACATGTTTTCAGCACAATTT--------TTTTTTTACAAAGCTCCCCTGATCCCATTTCCCCACCAAATTTTGC
AAGCACCTAAAACATTTGGTCATAATCACATACAGAAAGTTTCAGATTTTTTGTAAATGTTTTGCTAAGTTTTGATCATG
GGTGCACCGGGGGTGCAATGTCCCTAGGTGCACAAAAACCAAACTCTGTCGTCCTTAAATACACCGCTGATCTCGCTGTT
CACAGTACACAAGTAATCAGTCCAGCTTCAATCAATGGCCGCTCTAAAACAGCAATAGCTACAAATACAATTCTCAATAA
AAAAGGGCAAGGTTTAATATGT---
>chr5B_296
TTTTTA--------------------------------------------------------------------------
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--------------------------------------------------------------------TTGATGGAGATG
ATAGATGTATTTTTTGGATTGAAGTCACTAGTTCCTTCTTGGATATCACTCCATTAATGCAAAGATCACATTAAATTTAT
AGACCAACAAAAGGCATCCTAGCCCATAAATGAAACGAATCCATATTCAAGAATGTGAAGATCACATTATATTTGTAGAC
CAACAAAAGGCATTCCAGCCCGTAAATGAAACGAATCCATATTCAGGAATGTGAGGTTCACATTAAACTTACAGACCAAC
AAAAGGCATTCTAGCCCATAAATGAAACGAATCCATGTTGAGGATACTAACAAAATCCTTTAGAACAACTTCGTCCCATT
TAATGGAGTGGTATCCAAGAAGAAAATCTGCACAAGAACTTCCAATATAAAAGGGTGCTAGAGGGTGCCAGATCCATTGA
GGAATAAGAAGCACAAAAATAAGCAACCATGTTTGGATTAGTTTCAACACTTGTTCTCCCAGTTTTCTTCCTGAGCTTTG
CGCTCGCATGGGCGAATCCGAGCAACACGACGGGCCTAAGCTTTCGGCTAGTCGCCCTTAGTCGGACAGTGCCTGACGGG
CATGCTAACAATGGCTCGGCCTACACCACCGAGGACCTGCGTCTGCCGATTTCAACATCGGCCCAGTATGCTTACGGCGT
GTTCGTGTCGCTTGGCACCGGTGAAGGCACTAGGCTGAAGGTCCTCGGCCTCGACACCGAAATCAGCACATCATGGGTGA
TGTGCGAGCCGTGCCACCCGTCGCCGCCGCAGGTCGGCAACCTCTTCTCACCAAGCGCGTCGCCCATATTCCACGACGTC
CACAACAACGATCCTGTTTGCATCACACCCTACCGGAAGACGGCTCACGGCTGCTCCTTCCACTTCTCTTCGGTCACCGG
GTACCTCTCACGCGACACCTTCCACCTCCGCACCGGCCGATCGGGCGCGATCAGGGAGTCTGTTCCCCGTGTTGTGTTTG
GTTGCGCACACTCGTCCACCGGGTTCCACAAGGACAACACCCTTGGTGGGGTGCTCTCCTTGAGCCACCTGCCACTCTCC
CTCCTGACACAACTTGGTTTGACCGGAGTGGTGACCCGTCTTCACCTC--------------------------------
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--------------------CGGACCCGGTGAAGGGGCCACCGGGCGGCCCGCTCTGGTTTGACCGGATGTACAAATCGG
TGAAAGAGCAGCTCCCCAACATGGCGTTTCACTTTGAGGGCGGCGCCGAGCTGTGGTTCACGTCCGATCGGCTGTTTGAG
GTGCATGGCATGAATGCGCGGTTCATGGTTGCCGGCCGTGGGTACCGCCGGACGGTGATTGGCGCCGCGCAGCAGGTGAA
TACGCGGTTCACGTTCGACGTCCCCCGGGGGAAGTTGTCCTTCGTGTCGGAGGTGTGCGAATGAGATGTGGCTG-----G
TAGCCTAGCTTTGTTCTTGCTGTATTTCAGAAAATAATTGCCAATTTGAGTTCATGTTTTGTATTGCCGAATGAG-----
-------------------------CAGTGTTATTTCAGTCGTTGGTA-------TATGGACGTTTTGTTAAATTTATTA
AAAGATATGCAATAATATGCAGATATGTA---------------------------------------------------
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------------------------------------------------GGCACTATTGT---------------------
------------GGAATGTGTCCCTGAGGTCAAGGTTCGCTACCTGCGTAGTACTG------------------------
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>SNPs
SSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S----------S--SSS-------SS----SS--
---S-------------S----S-----------S---------------S-----S-S-----SS-S---S--------
------S---S---------S------------SS-------------S------------------------S----S-
---------------S----------------------------------------------------------------
-----------S----------------------------------------------------S------S-----S--
-----------------------S---S----------------------------------------------------
-----S-------------------S------------------------------------------------------
---------------S--------------------------S-------------------------------------
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---S----------------------------------------------------------------------------
----------S-------------S-------------------------------------------------------
----------------------S----------S----------------------------------------------
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-------------------S-------------------------S----------------------------------
-----------------------S---S-S------------------------S------------------------S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS----------------------------------S-------------------------
----S---------------------------------------------------------------------------
--------------S---S-------------------------------------------------S-----------
------------------------------------------------------------------S-S---S-------
------------------------------S-------S----------------------------------SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS------S---------------S--------------------------------
------S-------------------------------------------------------------------------
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-----------------------------------------------------------SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS---------------------------------------------------SS-------S-----S-
-------------------------S-------S-S--------------------------------------------
-------S-------------S----S---S----S-SSSS--S-----------S----S-------------------
S--------------------------------S---S-----S--------------------------S---------
----SS----------------------SS----S-SS--SSS-S-SSSS-SSSS--SSSS-SSSSSSSSSSSSS-----
----S-------S-------------S-------SSS--SS-SS-SSSSSSSSSSSSSSSSSS----------S------
S-------------------S--SS-SSSSSSSS-----S----S--------S----S--------------S------
--------------------------------S-S---------------S--S--------------------------
-S--------S--------------S----------------------------S-------------------S-----
-----S----------S--SS--------S-------S-S--------------S-----------------------S-
----S--S-----S--------SSS
>forward_50
------------------------------CCGACCCACTAGGAGGTTTG------------------------------
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>reverse_1662
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-------------------------------------------------------------TGGAAAAAGCATTGGTGGC
G-------------------------------------------------------------------------------
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>forward_1616
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----------------------------------------------------------------------------CCAC
AGTTGCAGCATCAACC----------------------------------------------------------------
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>reverse_3101
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------------------------------------------------------------GACGCTCTGCACCCAAGTTA
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