>input_sequence_64808
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----------------------------------------ATGCATGCATGCAGTGCGTACGCTTTTCTTTTTCTTATTT
CCAATGTGAGTCGCGACGTGTCTAGACATCACATGCATCAGCTTGCAGCGATCGCCCTCTCCCTCCTCCTCCTCGTCGCC
GCGGCGCCGGCCGCCGTCACCTGTAGCGAGGAGCTTGCTGCAGTGCTCCAGTGCCACCCGGCGCCGGCGCTCACGGACG-
--------GCGCGGCGTTCCGCGCCACCGTCCTGCCCCTCCTCGCCGCCCTCCCCTCCGCCGCCGCGCCGACGCGCTTCG
CCTCCCTGCATTCCGACGGCGCGTTCGCCCGGGGGTTCTGCTTCGGCGACTCCGCCACGCCGCCTTCAGACTCCGACTGC
GTCCGCTGCCTGTCCGACGCCGCCAGGAACCTCACCGCCGGCTGCGGCGCCACCAGCCGTCGCGCCGGCATCTTGAGCCA
GGGCTGCTCGCTCTCGTACGCCGACACCAACTTTTCCTCGCCCGGCCAGGACGCCTTCCGAGCGCGCTTCCACCTGGCGC
TCCCGAGCGACGCCGCCGCCCCTGCTTCTGACTCTGAGACCAGCGCCGGGGTCCTCTACTCCGCCGGCCTGCACG-----
--CCGAGCTCGTCGCCATGGCGCAGCTCATGGCGCAGCGCGCGGCCGGAAGGCTCTCCAAGCCGGTGATGCCAGCCAGCA
CGAGGGTGGTTCACAAAACCATCGTCGAGAAA------GGCTGCGGCTGCGGCTGCGACTTCGCCATCGTGAGCAGCACG
GTCCGCGTGCGGGTGCAGTGCGCCGGCGACCTCACGGCGGCGGACTGCGCCGGGTGCCTGCAGGACTCGGCGCAGGCCGT
GGGCTG--------GGACCTCGACGCGGCCCGCGGCGGCCGCGGTGGCGCGGCGGCCGCGGTGGCGCGGCGGCCGCGGTG
GTGGGTTTCAACTGCCACGTTCGGTTCGATGTCTCCACCGCA-------------GCGACCAGAGTGA------------
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>chr2A_1_TraesCS2A01G142100
TTGCTTGCCATTTAGTTATCGCCAAATTAAGAAGATCGACGGAGAAACAAACTCACCGGCCGTACATGCATGGCTATAGA
AACTCTAGATCGAGTATGTGGTAGCAGTAGAGACCATGCAATGCCTGCTGCTCAAGCATGCATACCGTACCAATACATAC
CATGCCTGCTGCTAATTAATCAGCTCCATTACAACTAATATAGAAGCTCAGATCGAATGACCAGACGCACGCGGACGCAA
CACTGCACACTTATTTTGCACACCTCCAGCCAGGGAAGGCTCGATCGATCTGGACCCGGCGGATCCTGACCTCAGACCGC
GGCGTCGCCTGCGCCTTCCGCTCCCTGCTGCTCCAGGTCGCCGGCCATGCAAGCCCGGATCTTGTCGGCGATGATATGGG
CGATGAGGCCGAGGATCCCCATGGTGCCCAGGAGAGCGGGGATGGCCACCACGCCGCAAACAAAGCCCTCGAGAAAACCC
TCATCGTATGGACTCATGGCCACCACGCCGATGAGGCTTAATTACGTGGTAGAGTTGGAAGAGGACGGCCGGGGTGGGTC
ACTTATAAAGAGAGACGTTGCAAGCTAGCCTCCTTCGATCCCTGTCCCTTTCTGCTGCTGCTGAATTTTTCTCCATTCAC
CGTACGTAAGCGCGTAGGGGTGAAAAAAACGAACGGTGCATGCACGCGACGCGCCAATTTCTTTTCTTCTCTTATGAGGC
CAGCAGCACATGCGCGAGACGCAACCGTACGTCCCAAAATGGGAAAAACGCGTCGCTCGGCACGCAGCGATTTAGTTAAA
GTCCGGTCGGGCCGTCGCCATCGCTCGTCTGTGTATCGTCAATGGCGAGCTGTCCTCGACCCAGAGTAGGAGTATTTCAC
GACTCGACGTGCTTGGAAAACGGGGTTGCAAGCGCGCACCAGTCTTATTTCGTGAAAGAATTCATTTCACCTTATCTAGT
AGGAGTACGTAGTACATCGTTGGTGTTGGTGCACTACTGCATGCATGCATGCAGTGCGTACGCTTTTCTTTTTCTTATTT
CCAATGTGAGTCGCGACGTGTCTAGACATCACATGCATCAGCTTGCAGCGATCGCCCTCTCCCTCCTCCTCCTCGTCGCC
GCGGCGCCGGCCGCCGTCACCTGTAGCGAGGAGCTTGCTGCAGTGCTCCAGTGCCACCCGGCGCCGGCGCTCACGGACG-
--------GCGCGGCGTTCCGCGCCACCGTCCTGCCCCTCCTCGCCGCCCTCCCCTCCGCCGCCGCGCCGACGCGCTTCG
CCTCCCTGCATTCCGACGGCGCGTTCGCCCGGGGGTTCTGCTTCGGCGACTCCGCCACGCCGCCTTCAGACTCCGACTGC
GTCCGCTGCCTGTCCGACGCCGCCAGGAACCTCACCGCCGGCTGCGGCGCCACCAGCCGTCGCGCCGGCATCTTGAGCCA
GGGCTGCTCGCTCTCGTACGCCGACACCAACTTTTCCTCGCCCGGCCAGGACGCCTTCCGAGCGCGCTTCCACCTGGCGC
TCCCGAGCGACGCCGCCGCCCCTGCTTCTGACTCTGAGACCAGCGCCGGGGTCCTCTACTCCGCCGGCCTGCACG-----
--CCGAGCTCGTCGCCATGGCGCAGCTCATGGCGCAGCGCGCGGCCGGAAGGCTCTCCAAGCCGGTGATGCCAGCCAGCA
CGAGGGTGGTTCACAAAACCATCGTCGAGAAA------GGCTGCGGCTGCGGCTGCGACTTCGCCATCGTGAGCAGCACG
GTCCGCGTGCGGGTGCAGTGCGCCGGCGACCTCACGGCGGCGGACTGCGCCGGGTGCCTGCAGGACTCGGCGCAGGCCGT
GGGCTG--------GGACCTCGACGCGGCCCGCGGCGGCCGCGGTGGCGCGGCGGCCGCGGTGGCGCGGCGGCCGCGGTG
GTGGGTTTCAACTGCCACGTTCGGTTCGATGTCTCCACCGCA-------------GCGACCAGAGTGATGACCCCAGCGA
CCACAGCGGCCGTGAGTTCTCGATCCTACTAATGGCCTAGGATCTTTCTTTCCTTT---TCCTTTCATTCAAAACCGAGT
---------------GGCACTGACACACAACAAATTTTGGTTTCCACACAGTTCTCCGTGTAGGCCTTCTAGCTTTGATC
ATAGCCAACTTCATTCTGATAGTAGCCAACTACTGCACTCCTTCTC----------GCCGTTGCCGGTGAAGAGAACAC-
-------------AACACCGGCAGGTACTCTTTTTCTTTTTTTCTTTTTTTC-GTTTTTGCTTTTGCTATATTTCTTTAC
TCATGCACA-----------------AGGGGGAAAATGCAACAAAATCGTAGCATATT---CCAGTTTTGTCACATACAT
ACTCATGCATGTTGGCCACTCTCGATTGTGCATGGAGTATCTTCTTAATAATCTCCAGACGGTCGGTGACAAAGATGATG
AGAAGCGAGA-ACAGGCTACAGCAATCCGCAAAATAAGAAGTTCAAGAGTGTG---GCGCTTCATGTTACTAGTAAGCGT
GCACGTGCAATGCACGTATAACCGTGAGAAGAAGAAAAATCTCCTGTGTAAGCATATTTTTTACATGTACG-TAATACAT
AGTATATGGATTCTGTAAAGAGGAAGTTAAGTACTTCC---AGGGAATGGACTCTAGCATGTAGTATTGCTAATTAACAT
CTCC----------------TTGTAAACG---ATATGAGCATTATTTAAGGAAT-AAGTCTAATTTAGATTAAAAAAATT
AACAT-GGTGAAAAATTATATTTGTTATCCGACTGATATTGTAAAAGACTTGTCG-------------------------
-----------ACTTACATGGAGCAGGGCGGCATAGAAACAAACATAGTTATGGCTAG-TTTTTTGCTATTCATAAATAT
TTTCCGCGGCTTCTGGTGAAGAATGAAGTCCGTAAACCGGTGAAAATAAAAATAATAGGAGAGTGGTGATTTTGCCATAG
AGCGTTTCTTTCCTAGTAAGCTCTGG-CACAAACTGCGGCCCAGAAATTCATCTCATTTATATTTGGTTAGTTTTGCA
>chr2B_1081
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----------------------------------------GCTTGCAGCGATCGCCCTCTCCCTCGTCCTCGTCG---CC
GCGGCGCCGGCCGTCGGCACGTCTAGTGAGGAGCTTGCCGCAGTGCTCCAGTGCCACCCGGCGCCGGCGCTCACGGACGC
CACCGACGGCACGGCTTTCCGGGCCAGCCTCCTCCTGCTCCTCAGCGCTCTCCCCTCCGCCGCCGCGCCAATGGGCTTCG
CCTCCCTGCACTCCGACGGCGCGTTCGCCCGGGGGGTCTGCTTCGGCGACCCCACCACGCTGCCTTCAGGCTCCGAGTGC
GCCCGGTGCCTGTTTGACGCCGCCAGGAACCTCACCGCCGGATGCGGTGCCACCAGCCGTCGAGCCGGCATCTTGAGCCA
GCGCTGCTCGCTCTGGTACGCCGACACCAACTTTTCCTCGCCCGGCCAGGACGCGTTCCGAGCGCGCTTCCACCTCGCGC
TCCCGAGCGACGCCGCCGCCCCTGCTTCTGACTCTGAGACCAGCGCCGGGGTCCTCTACTCCCCCGGCCTGCACGA----
---CGAGCTCGTCGCCATGGCGCAGCTCATGGTGCAGCGCGCGGCCGGAAGGCTCTCCAGGCCGGCGATGCCGGCCACCA
TGCGCGTGGTTCACAAAACCATCGTGGAGAGA------GGCTGCGGCTGCG------ACTACGCCATCGTGAGCAGCACG
GTCTACGTGCGGGCTCAGTGCGCCCGCGACCTCACGGCGGCGGACTGCGCCCGGTGTCTTCAGGACTCGGCGCAGGCCAT
GGACTG--------GGACCTGGATGCTGCCC--------------------GCGGCGACGGTGGCGCGGCGGCCGCGGTG
GTGGGCTTCAACTGCCACGTTCGGTTCGAGGTCTCCACCGCACTGGCGCCGCGCAGCGACCAGAGCGACGACCAGAGCGA
CCACAGCGGCAGTGAGTTCTCGATCTTATTAATGGCCGACGATCTTTCTTTCTTTTTTGTCCTTTCACTCAAAAACGAAT
---------------GG-----------------------------CACAGTTCTCCGTGTAGGGCTTTTGGCTTTGATC
ATAGCGAACTTCATTCTGACAGTAGCCAACTACCGCACTTCT-------------------CGCCGGTGAAGAGAAGACG
CAA----GGATGTAACACCGGCAGGTACTCT----------TTTTTTCTTCCAGTTTTTGCTTTTGCTATATTTCTTTAC
TCATGTTGTTTAACACGATTGTTCCGAGGGAAAAAATGCAATAAAATCTTAGAATGTAGTACCAGTTTTCTTACATACAT
ACTCATGCATGTTGGCCACTCTCGATTGCGCAGGGAGTATCTTCTTAATAATCTCCAGAGGGTCGGTGACAAAGATGATG
AGAAGCGAGA-ACAGGCTGCAGCAATCCGCAAAATAAGAACATCAAGAGTGT----------------------------
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>chr2D_1083
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------------------------------------------TTGCAGCGATCGCCCTCACTCTCCTCCTCGTCT---CC
GTGGCGCCGGCCGCCGTCACCTGTAGCGAGGAGCTTGCTGCAGTGCTCCGGTGCCACCCGGCGCCGGCGCTCACGGACGC
A---------------TTCCGCGCCACCGTCCTGCCCCTCCTCGCCGCCCTCCCCTCCGCAGCCGCGCCGACAGGCTTCG
CCTCCCTGCACTCCGACGGCGCGTTCGCCCGGGGGGTCTGCTTCGGCGACTCCACCACGCTGCCTTCAGGCTTCGAGTGC
GCCCGGTGCCTGTCCGACGCCGCCAGGAACCTCACCGCCGGATGCGGTGCCGCCAGCCACCGAGCCGGCATCTTGAGCCA
GCGCTGCTCGCTCTGGTACGCCGACACAAACTTCTCTTCGCCCGGCGAGGACGCCTTCCTAGCGCGCTTCCGCCTCGCGC
TCCCTG---------------CTTCTTCTGACTCTGAGACCAGCACCGGGG---TCTACTCCGCCGGCCTGCACGAGGAG
CTCCGAGCTCGTCGCCATGG------------TGCAGCGCTCGGCCGGAAGGCTCTCCAGGCCGGCGATGCCGTCCAACA
CGCGCGTGGTTCACAAAACCATCGTGGAGAGA------GGCTGCGGCTACG------ACTACGCCGTCGTGAGAAGCACG
GTCCATGTGCGGGTGCATTGCGCCGGCGACCTCACGGCGGCGGACTGCGGCCGGTGCGTGCAGCACTCGGTGGAGGCCAT
GGGCTG--------GGACCTCGACGTGGCCT--------------------GCGGCGATGGTGGCGCGGCGGCCGCGGTG
GTGGGCTTCAACTGCCACGTTCAGTTCGAGGTCTCCACCGCACTGGTGCCGCGTAGCGACCAGAGTGACGACCCCAGCGA
CCACAGCAGCCGTGAGTTCTCGATCTTA--AACGGCCTACAATCTTTTTTTCCTTT---TCCTTTCATTCAAAAACGAAT
CTCTTTTCTTTCTCTGGCACTGATACACAACAAATTTTGGTTTC--CACAGTTCTCCGTGTAGGCCTTCTAGCTTTCATC
ATAGCCAACTTGATTTTG----------ACTGCTGCACTCCTTCTCCTTCCTTCTCGCCGTCGCCGGTGAAGACAAGAC-
-------------AACACCGGCAGGTACTCC----------TTTTTTTTTCG-TTTTTTGCTTTTGCTATATTTCTTTAG
AGAGGGAGGTAA------------------AAAAATTGCAATAAAAATCTTATGTTACAGT---------TTGCTTACAT
ACTCATGCATGTTGGCCACTCTCGATTGCGCAGGGAGTATCTTCTTAACTATCTCCAGAGGGTCGGTGACAAACATGATG
AGAAGCGAGAAACAGGCTACAGCAAT------------------------------------------------------
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>chr2B_1560
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------------------------------------------------GGGTCCTCTATTCCGCCGGCCTGCACG-----
--CCGAGCTCGTCGCCATGGCGCAGCTCATGGCGCAGCGCGCGGCCGGAAGGCTCTCCAAGCCGGTGATGCCAGCCAGCA
CGAGGGTGGTTCACAAAACCATCGTGGAGAAAGGCTGCGGCTGCGGCTGCG------ACTTCGCCATCGTGAGCAGCACG
GTCCGCGTGCGGGTGCAGTGCGCCGGCGACCTCACGGCGGCGGACTGCGCCGGGTCCCTGCAGGACTCGGCGCAGGCCGT
AGGCTGGGAGCCTGGGACCTCGACGCGGCCC--------------------GCGGCGACGGTGGCGCGGCGGCCACGGTG
GTGGGCTTCAACTGCCACGTTCGGTTCGAGGTCTCCACCGCGCTGGCGCCGCGCAGCAACCAGAGCGACGACCCCAGCGA
CCACAGCGGCAGTGAGTTCTCGATCCTATTAATGACCTACGATCTTTCTTTCCTTT---TCCTTTCATTCAAAAAGGAAT
---------------GGCACTGACACACAACGAATTTTGGTTTCCACACAGTTCTCCGTGTAGGCCTTCTAGCTTTGATC
ATAGCCAACTTCATTCTGACAGTAGCCAACTACTGCACTCCTTCTC----------GCCG------GTGAAGAGAAGACG
CAACGCCGGATGCGACATCGGCAGGTACTCT----------TTTTC-------TTTTTTGCTTTTGCTATATTTCTTTAC
TCATGTTATTTAACACGATT---------GAAAAAATGCAATAAAATCTTAGCATGTT---CCAGTTTTCTTACATACAT
ACTCATGCATGTTGGCCACTCTCGATTGCGCAGGGAGTATCTTCTTGATTATCTCCAGAGGGTCGGTGACAAAGATGATG
AGAAGTGAGA-ACAGGCTACAGCAATCCGCAAAATAAGATCATGAAGAGTGCTGTAGCGCTTCATGTTA-----------
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>chr5B_2437
TTATA---------------------------------------------------------------------------
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------------------------------------------------------------------------GTAAGCGT
GCACGTGCAATGCACGTATAACCATCAG--GAAAGAAAATCTTCTGCATAAACATATTTTTTACATGTG-----ATACAT
AGTATGTGGATTCTGCAAAGAGGAAATTAAGTAGGGCAAGGAGAGAATGGATTCTGGCATGTAGAACTGCTAATTAACAT
GGTGATGAATTATACTTCCTTTGTAAAGAAATATAAGAGCATTTACATCACTACTTCATGGAGGGA--------------
-----------------ATATTTGTTATCAGGCTGATACTGCAAAAGACTTGTCGACTTAAAATCTGACTGATACTGCAA
AAGACTTGTCGACTTACATGGAGCAGGGCGGCCTAGAACCAAACATAGTTACTCCTAG--TTGATTCTATTCATAGAGAT
TTTCCGTGGCTTGGTGAC--GAATGAAGTCAGTAAACCGGTGAAAATAAAAATAATAGGAGAGTGGTGATTTTGGCATAG
AGCGTTTCTTTCGTAGTAAGCTTCACACAAAAACTGCGGTAAGGAAATTCATCTCATTCATATTTCATTAGCGTTGCA
>chr2A_2439
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--------------------------------------------------------------------ACTAGTAAGCGT
GCACGTACAATGCACGTATAACCGTGAGAAGAAGAAAAATCTCTTGTGTAAGCATATTTTTAACATGTACGTTAATACAT
AGTATGTGGATTCTGCAAAGAGGAAGTTAAGTACTTCC---AGGGAATGGACTCTAGCATGTAGTATTGCTAATTAACAT
CTCC----------------TTGTAAACG---ATATGAGCATTATTTGAGGAATAAAGTCTAATTTAAATTAAAAAAATT
AACAT-G-TGAAAAATTATATTTGTTATCCGACTGATATTGTAAAAGACTTGTCG-------------------------
-----------ACTTACATGGAGCAGGGCGGCATAGAAACAAACATAGTTATTGCTAGTTTTGTTGCTATTCATAAATAT
TTTCCGCGGCTTCTGGTGAAGAATGAAGTCCGTAAACCGGTGAAAATAAAAATAATAGGAGAGTGGTGATTTTGCCATAG
AGCGTTTCTTTCCTAGTAAGCTCTGG-CACAAACTGCGGCCCAGAAATTCATCTCATTCATATTTGGTTAGTTTTGCA
>chr1B_2439
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--------------------------------------------------------------------ACTAGTAAGCGT
GCACGTGCAATGCACGTATAACCGTGAGAAGAAGAAAAATCTCTTGTGTAAGCATATTTTTAACATGTACGTTAATACAT
AGTATGTGGATTCTGCAAAGAGGAAGTTAAGTACTTCC---AGGGAATGGACTCTAGCATGTAGTATTGCTAATTAACAT
CTCC----------------TTGTAAACG---ATATGAGCATTATTTGAGGAATAAAGTCTAATTTAAATTAAAAAAATT
AACATGG-TGAAAAATTATATTTGTTATCCGACTGATATTGTAAAAGACTTGTCG-------------------------
-----------ACTTACATGGAGCAGGGCGGCATAGAAACAAACATAGTTATTGCTAGTTTTGTTGCTATTCATAAATAT
TTTCCGCGGCTTCTGGTGAAGAATGAAGTCCGTAAACCGGTGAAAATAAAAATAATAGGAGAGTGGTGATTTTGCCATAG
AGCGTTTCTTTCCTAGTAAGCTCTGG-CACAAACTGCGGCCCAGAAATTCATCTCATTCATATTTGGTTAGTTTTGCA
>SNPs
--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------S---SSS--
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----------S----S---------------------------------------------------------S------
----------S------------------------S-----------------S------S--------S------S---
-S---S-----------------------------------S-----S--------------S-----------------
-S------------S------------------------------------------------------------S----
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-------------------------S-------------------------SSSSSS-----------------------
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-------------------------------SSSSSSSSSSSSSSSSSSSS-----SS----------------------
-----S-----------------------S--------------------------------------S-----------
----------------------------S----------S----------------------------------S---S-
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-------------------S-----------------------------------------S--------------S---
-------------------------------SSSSSSSSSS--S------S-----------------------------
-----S-SS---------------------SS---------S------S------S-------------S-S--------
----------------------------S---S--------------------------S--------------------
----------------------------------------SS----------S---------------------------
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-----S---------S----------------------------------------------------------------
-----------------------------------------------S-------------------S------------
-------S------------------------------------------------------------------------
----------------------------------------------------S---------S-----------------
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----------------------------------------------------------S-------------------
>forward_932
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--------------------------------CGCGCACCAGTCTTATTTCG----------------------------
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>reverse_2522
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-----------------------------------------TTCAAGAGTGTGGCGCTTCA-------------------
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