>input_sequence_64758
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------------ATGAGAGGCCTCAGATCGCGGATCCTCCGGACCCTGCAGTCCTTCCCCAACACCGCCGCCGCGCAGTC
CAACGCCCTCATCCCGCCCCCCGACGCCGCCGCACCCG---------AGGCCGTGCCCGAGCCGGCCGCCGTCCCCGAT-
--------------GGCGACGACGACAAGGAGAACCTGTCGCCGGAGGCCAACCCGCGGAAGGCCAAGAAGATGAAGGTG
GGCTCTCTG---GAGGGTGGCTCTCTGGA---------------GGAGTCCGGCAGGCGCTACCGCCGGCCGGAGCTCGA
GTCGTCCAGCCTCTTCGACCCGGACCTCCTCGCCGCCTTCCGCGGCGTCGTGGACGCGTACGCCCAGGCGCTCGACAAGA
CCCAGCGCCGCGATGTCGACTTCGACGACGCCGACGACGACATCGCCGCCGCGCTGGACGCCGGCGGCCGCGACGAGGAC
CCCCTGGCCGGGCTGGAGTGCCGGTGCCCGCCCGGCGGGGAGCGGGCCGTGGTGCTCTACACCACGTCGCTGCGCGGGGT
GCGCAAGACGTTCGAGGACTGCGCCACCGTGCGCCGCCTGCTCGACGGGCTCCGCGTCGCCTTCCTGGAGCGCGACGTGT
CCATGCACGCGCCCTACCGGGACGAGCTCCGCGCTCTGCTGCCGCCTCCGCCG---------GGCGA---------CGGC
GCCAGCATGCCCCTGCCGCCGCGGCTGTTCGTGGACGGGCGGTACGTGGGCGGCGCCGACGAGGTGGTGGCGCTGCACGA
GCGGTCGCGGCTCCGGGCGATGCTCCGGCGCGCCGCGCGCCGGCGCGCGGGCGACGCGGCCTGCGCGGTGTGCGGCGGCG
CCTGGTTCGTGGTGTGCGGCGGGTGCAGCGGCCGTCATTGGCTCTATGACGACGGCTCGGCCGCCGCCGTCGCCGCCAGC
CGCGTGCCGTGCCCCGGGTGCAACGAGAACGGGCTCGTGCCGTGCCCCCTGTGCAGCTGA--------------------
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>chr5B_1_TraesCS5B01G374300
TAGTTCGGGGTCGGGGGAAAGAGGGTGCATCATCGTCACAAATACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGGTGTGAATAGCAACAGGT
TGTCTGGTTTGGGCGAGAAAGGGTGCAGAGTCGTCGGCGATACAACACAACTGGTGTGGGTCTTTCATGGGAAGGCTGGG
GGATGGCAGCAACACAATGGAGACGATGATTTAGGCAAGGAGGAGGCGGCGACAAGCAGTTGGGCCGGCGGGTGGTGGGT
CGGTGTGGATGGATGGGGGATATACAATTGATTTTGAAACTAAAAC-TTTTTTTAAGACAATTGTTGTACTGGTGGCCCC
ATTTTTA--CTTCGTATAGGTGCGGGCGCGCAAATTTGCTGAGCAAAG--GTGGACAAATTATTTCAG------------
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--------------------------------CGAATTTGGGCAAGATCACC--------------------------TT
TTGTCTTGCTCGCCCTTTCTTTTCAATT--CCCGTGGGTCTCGGTCGCCCCGGTAGCCGTTGCTCCCACGTCCCCTCCCC
TCGGCTGCTCTGCTCCGCCAGCAGCCGATGCTTTAAAAACGGCAACTCGCATTTCCCCCTGCTCTT---TTCTAGCCGTT
GCGCGACCT-------------TCTTGGCGTTTGCGCCC-ACAAAATTAATTATCAGTCTACCAGAGCGGAAGCATCCTA
------------AGCAGC--------------------------CGCACTGAATCAACAAGGGGATCGATCGCATTGCCG
CCGCCGCGCAGTCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGGAGATTGA
TCGGGGAGGAGGATGAGAGGCCTCAGATCGCGGATCCTCCGGACCCTGCAGTCCTTCCCCAACACCGCCGCCGCGCAGTC
CAACGCCCTCATCCCGCCCCCCGACGCCGCCGCACCCG---------AGGCCGTGCCCGAGCCGGCCGCCGTCCCCGAT-
--------------GGCGACGACGACAAGGAGAACCTGTCGCCGGAGGCCAACCCGCGGAAGGCCAAGAAGATGAAGGTG
GGCTCTCTG---GAGGGTGGCTCTCTGGA---------------GGAGTCCGGCAGGCGCTACCGCCGGCCGGAGCTCGA
GTCGTCCAGCCTCTTCGACCCGGACCTCCTCGCCGCCTTCCGCGGCGTCGTGGACGCGTACGCCCAGGCGCTCGACAAGA
CCCAGCGCCGCGATGTCGACTTCGACGACGCCGACGACGACATCGCCGCCGCGCTGGACGCCGGCGGCCGCGACGAGGAC
CCCCTGGCCGGGCTGGAGTGCCGGTGCCCGCCCGGCGGGGAGCGGGCCGTGGTGCTCTACACCACGTCGCTGCGCGGGGT
GCGCAAGACGTTCGAGGACTGCGCCACCGTGCGCCGCCTGCTCGACGGGCTCCGCGTCGCCTTCCTGGAGCGCGACGTGT
CCATGCACGCGCCCTACCGGGACGAGCTCCGCGCTCTGCTGCCGCCTCCGCCG---------GGCGA---------CGGC
GCCAGCATGCCCCTGCCGCCGCGGCTGTTCGTGGACGGGCGGTACGTGGGCGGCGCCGACGAGGTGGTGGCGCTGCACGA
GCGGTCGCGGCTCCGGGCGATGCTCCGGCGCGCCGCGCGCCGGCGCGCGGGCGACGCGGCCTGCGCGGTGTGCGGCGGCG
CCTGGTTCGTGGTGTGCGGCGGGTGCAGCGGCCGTCATTGGCTCTATGACGACGGCTCGGCCGCCGCCGTCGCCGCCAGC
CGCGTGCCGTGCCCCGGGTGCAACGAGAACGGGCTCGTGCCGTGCCCCCTGTGCAGCTGAGGTGATCCCTGCACTG-CCC
CGACAGACATGTACATCTTTTTTGTGTATCACCATGGCGACAGCGAAATTCTTTGCGATTGTTTCACCCTGTAGTA---A
-----GTATAATTTGTCACACATTTGTTCTCC-GCTCATTCACCCTGCAAATTGTGAAATCCACGAAGCCATTGTGCATG
TACGACATGATCTGATGTGCTGTGACTGTGACACTCTCATCTGTTGTTCAGACCTGCCGTGATAAAAATGCAGCATTGCC
TGTTCGAACCACGTCAGAGTTGCACTTATGCACCCAAGAAGACAAGAGACACTTAAAATAGACATTTGTCGCACTTTGTA
GGTAAAGTCACTCGGCTCAACTATACAATGTGTGGAGAAAATTCTCATACAAGTTGATTGAAGAAAAAGAACTAGACTAT
GCACGACCAACAAGGGACCAGAAGTGCGCTATCGTACGTTGCCCACGTGGAGTGAAGTCTGAAATAAACCCTGTCATTGT
AGAGCTCGAAGCAAATGAACCCTCATCTCTAAAACCCTGAAGTTTGTAGCTTATACTCTTTAATCCCGGTCTAAATAAAC
CTTCTGGCGGTTTTATGAGTGGATTTGATGACGTGGCAACTAAAGGCCGGGATTGCTCACTTTGACCATAACAATTTTCT
TTGCCGAGTTGTATTGCTGCCACATTGCTGCGTTTGTCAATGGGTTCGAGCCACAGACCATCTCATCTTGCCATGGTGCG
AAGCCAGGGCCTGAGCCCATCTGGTCGCTGCTCGCTCAAGATGGGAATGGGCCGACCCGGCCCTGGCCTTGGACCCGGCC
CCATGGCCCCAAGATCAGTATGCGAGGCCATGGGTCGGCCCATTTCATCAGAAAATTATGGCCTCGCTGACCCGTTGGGT
ATATGAGGCCGACCCAAAATCAAGATGAGAAAATCCATGAATTTAGTTAGCACAATCTGAAGACCGGGAAGGCCACGGCG
AGCTGGACAAGTTGAAAAGGAAGAGGAAAG
>chr5D_418
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-----------------TGGAGACGACGATTTAGGCAAGGA--AGGCGGCAGCAGGCACCGTCGGTTAGAAGCGTGCCT-
-GGTGTGGATGGGTGGGGGATATATAATCGATTTTGAAACCAAAACTTTTTTTCCAGACAATTGTTGTACAGGTGGTCCC
ATTTTTC--CTTCG--TAGGTGCGGGCGCGCAAATTTGCCGAGCAAAGAGGTGGACAAATTATCGCGG------------
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--------------------------------TGAGTTTGGGCAAATTACCTTTTGCGCTCCGCATCGCAACTTAAAGTT
TTGTTATGCTCGCCCTTTCTTTTCAATTTCCCCGTGGGTCTCGGTCGCCCCGGTAGCCGTTGCTCCCACGTCCCCTCCCC
TCGGCTGCTCTGCTCCGTCAGC---CGATGCTTTAAAAACGGCAACTCACATTTTCCCCTGCTCTTCTCTTCTAGCCGTT
GCGCGACCCCCTCTTGTTGCCATCTTGGCGTCTGCGCCC-GCAATTTTAATTGCCAGCAT---AGAGCGGAAGCATCCTA
------------AGCAGCAGCAATCAGTGCCCCCACCCCACAGCCGCACTGAATCAAGACGGGGATCG----CATTGCCG
CCGCTGCGCAGTGTGTGAGAGAG-------------------------------------------------GAGATTGA
TCGGGGAGGAGGATGAGAGGCCTCAGATCGCGGATCCTCCGGACCTTGCAGTCCTTCCCCAACGCCGCCGCCGCGCAGTC
CAACGCCCTCCTCCCGCCGCCCGACGCCGCCGCACCCGCGCCGTCGGAGGACGTGCCCGAGCCGGCCGATGGCGACTGCC
GGGGCGGCGGCGGCGGCGACGACGACAAGGAGAACTTCTCGCCG---------------AAGGCCAAGAAGATGAAGGTG
GGCTCCGGCCGCGAGGGTGACTGTCCCGG---------------GGAGCCTGGCAGGGGCTACCGCCGGCCCGAGCTCGA
GTCGCCGAGCCTCTTCGACCCGGACCTCCTCGCCGCCTTCCGCGGCGTCGTGGACGCGTACGCCCAGGCGCTGGAGAAGA
CCCAGCGCCACGGTGACGACTTCGACGACGCGGACGACGACATCGCCGCCGCGCTGGACGCCGGCGGCCGCGACGAGGAC
CCCCTGGCCGGGCTCGAGAGCCGGTGCCCGCCCGGCGGGGCGCGCGCCGTGGTGCTCTACACCACGTCGCTGCGCGGGGT
GCGCAAGACGTTCGAGGACTGCGCCACCGTGCGCCGCCTGCTCGACGGGCTCCGCGTCGCCTTCCTGGAGCGCGACGTGT
CCATGCACGCGCCCTACCGGGACGAGCTCCGCGCGCTGCTGCCGCCTCCGCCCGGTGGCGCCGGCGA---------CGGC
GCCAGCATGCCCCTGCCGCCGCGGCTGTTCGTGGACGGGCGGTACGTGGGCGGCGCGGACGAGGTGGTGGCGCTGCACGA
GCGGTCGCGGCTCCGGCCGATGCTCCGGCGCGCCGCGCGCCGGCGCGCGGGCGACGCGGCCTGCGCGGTGTGCGGCGGCG
CCTGGTTCGTCGTGTGCGGCGGGTGCAGCGGCCGTCATTGGCTCTATGACGACGGCTCGGCCGCCGCCGTCGCCGCCAGC
CGCGTGCCGTGCCCCGGATGCAACGAGAACGGGCTGGTGCCGTGCCCCCTGTGCAGCTGAGGCGATCCCTGCCCTGCCCC
CGACAGACATGTACATCTTTTTTGTGTGTTACCATGGCGACAGCGAAATTCTTTGCGATTGTTTCAACCTGTAGTA---A
GTACTGTATAATTTGTCAGACA-TTGTTCTCC-GCTCATTCACCCTGCAAATTGTGAAATCGACGAAGCCGTTGTGTATG
TACGACATGATCTGATGCGCG-----TGTGACACGCCCATCTGTTGTTCAGACCTGCCGTGATAAATATGCAGCATTGCC
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>chr5A_524
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-------------------------------------------AAC-TTTTTTTCGGACAATTGTTGTACTGGTGGCCCC
ATTTTTTTACTTCG--TAGGCACGGGCGCAGAAATTTGCTCAACAAAG--GTGGGCAAACTATTGCTGTGAATTTGCGAA
AATCCTACATTGACGAAAAATCCATACGGATTGGTTTTTACGGACCTGTCTTCCACTAAGGGGGTGTTTGGTTCCAGGAA
CTATTTGGTGTTGGAATTAAAAAAAGTCCCTAGCAAACCAAACAGGGTGGGACTTTTTTGAGACTTTTTACTAAAAGTCC
TTGGAAGTATCTCCTTGAGAGTCTTTTTCAAAAAGTCCTACAGACTAAAAAAAATCCTAGAACTAGAGAACCAAACATCA
CCTAATTTTCAGGGGTGACCCCCCTCTTCCCATAAATACCCAACCGCAGTTTGACACGGTCGTCCGTAACGTCAGTATCG
TATGAACCTGTCCGTAGCTCTAGCATCTCTCGTGAATTTGGGCCAAATACCTTTTGCGCTCCTCATCGCAACGTGAAGTT
TTGTGTTGCTCGCCCATTCTTTTCAATTTCCGTTGGTCTTGTT---GCCCCGGTAGCCGTTGCTCCCACGTCCACTCCCA
TCGGCTGCTCTGCTCCGTCAGC---CGATGCTTTAAAAACGGCAACTCGCATTTCCCCCTGCTCT---CTCCTAGCCGTT
GCCCGACCCCCTCCCTTTGCCATCTTGGCGTCTGCGCCCCACAATTTTAATTGCCAGTAT---AGACCGGAAGCATCCTA
AGCAGCAGCAGCAGCAGCAGCAATCAGTGCCCCACAGC--CAGCCACACTGAATCAAGACTGCCGCCGAGG---------
------------------GAGAG-------------------------------------------------GAGATTGA
TCGGGGAGGAGGATGAGAGGCCTCAGATCGCGGATCCTCCGGACCCTGCAGTCCTTCCCCAACGCCGCCGCCGCGCACTC
CAACGCCCTCCTCCCGCCGCCCGACGCCGCCGCACCCGCGCCGTCGGAGGCCGGGCCCGAGCGGGCCGATGGCGACTGCC
GGGGCGGCAA------CGACGACGACAAGGAGAACCTCTCGCCGGAGGCCAACCCGCGGAAGGCCAAGAAGATGAAGGTC
ACCTGCGACCGCGAATTGGGGAGTCCGGCGGCGATGTCTCCTGTGGAGCCCGGCGGGCCCTACCGCCGCCCCGAGCTCGA
GTCGGCCAGCCTCTTTGATCCGGACCTCCTCGCCGCATTCCGCGGTGTCGTCGACGCGTACACGCAGGCGCTCGAGAAGA
CCCAGCGCCAGCCCATCGA---CGACGACGCTGACGACGACATCGCCGCCGCGCTGGACGCCGGCGGCCGCGACGAGGAC
CCGCTGGCTGGGCTCGAGAGCCGGTGCCCGCCCGGCGGGGCGCGCGCCGTGGTGCTCTACACCACGTCGCTGCGCGGAGT
GCGCAAGACGTTCGAGGACTGCGCCACCGTGCGCCGCCTGCTCGACGGGCTCCGCGTCGCCTTCCTGGAGCGCGACGTCT
CCATGCACGCGCCCTACCGGGACGAGCTCCGCGCGCTGCTGCCGCCTCCGCCG---------GGCCCCGGCGGCGCCGGC
GCCAGCATGCCCCTGCCGCCGCGGCTGTTCGTGGACGGGAGGTACGTGGGCGGCGCGGACGAGGTGGTGGCGCTGCACGA
GCGGTCGCGGCTCCGTCCGATGCTCCGGCGCGCCGCGCGGAGGGGCGCGGGCGACGCGGCCTGCGCGGTGTGCGGCGGCG
ACTGGTTCGTGGTGTGCGGCGGGTGCAGCGGCCGTCATTGGCTCTATGACGACGGCTCGGCCGCCGCCGTCGCCGCCAAC
CGCGTGCCGTGCCCCGGATGCAACGAGAACGGGCTGGTGCCGTGCCCCCTGTGCAGCTGAGGTGATCCCTGCGCTGCCC-
CGACAGACATGTACATCTTTTTTGTGTATTACCATGGCGACAGCAAAATTCTTTGAGATTGTTTCACCCTGTTGTAAGTA
GTACTGTATAATTTATCAGACA-TTTCTTGTCTGCTCATTCACCCTGCAAATTGTGAAATC-------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS---------S--------------SS-------SS--S---SSSSS-SSSSSSS-S-SSSSSS
S-----------S-----------S---S-----------S-------------S-------------------------
------S-------SS------------------------------------------------S-S-------------
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--------------------------------S------------S--SS-S----------------------------
----S---------------------------------------------------------------------------
-----------------S----SSS-------------------------------------------------------
--------S----------------------S------------SS------SS----S-SSS-----------------
---------------------------------------------------------S-S---------SSS--------
----S-------SS-S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------
---------------------------------------------------------------S----------------
----------S-------S-------------------------------------------------SS-S-SS-SSS-
-------------------------------------S------------------------------------------
-----SSSS-------------S--S--S-------------------S----------------------S--------
----S----------------------------------------------------------------------S----
---------S--S------------------S------------------------------------------------
--------------S---S---------------------S---S-----------------------------------
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----------------------------------S---------------------------------------------
--------------------------------------------------------S-----------------------
----------------S---------------------------------------------------------------
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-----------------S-----------------S------------------------------------S-------
-----------------------------S--------------------------------------------------
------------------S---S--------------------------------------S--------S-----S---
-----------------S--SSSSSS--------S-S-----------------------------S-------------
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_370
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------------------------------TCGTCGGCGATACAACACAA------------------------------
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>reverse_2884
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---CGACCAACAAGGGACCAGAA---------------------------------------------------------
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