>input_sequence_64737
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----------ATGCCGGAAGAAATGGTGTTCTGCGGCACAGCCAGCTTCAAGGACGTTGACAAGGGCGAGCCGATGAGCG
GCGGAGGCAAGCAGGCGCAGAGGAAGGAGAAGAAGAAGCCGGTCACCGGGAAGAAGGAGAACCCGTACGCGTCGCGCGGG
CTGGACAAGTTCTCCATGGTGCTCGCGGAGCTCGAGTCCCGGCGGGAGAAGGTCCTGCGCCGCGTCGACGGCGGCGACCA
CGTCATGGTCCGGTTCGTGCAGTCCGAGACCAAGGGCTGGGTGCCCATCGTCGTCAAGCTGCCGACGGAAGAGCCCGCCG
CCAAGGCCGAGCCCAAGAAGAAGTGCAAGTCCAAGCTGGCCGTGTCGTCCACGCCTCCGCCCACGCAGCCGCCGTCGCCG
CGGACGGAGTCCACCAGCCCGAGAGGAGGAGACGACGCCGTCAAGCACGCCGCGGCTGTGACGGCGCCGGCTGTCGCTGC
GGCGCCGACGAAGAAGAAGGCTTCGGCCGCCGGGAGGTGGTCGTGGGCGGACAAGGCGATTAGGCCGAGCCAGTACTGGC
CGTTCGTGGCGGTGCTGCTCTTGCTGAGCCTGGTCGTGTTCGGGAGGATGTTCGCCATCTGCTGCACCTCCATCTGGTGG
TACCTCGTGCCCATCTTGAACGGCGAGGATGGAGGACCCAGATCCATGGGCAAGACCGGCAGGCATCTCGGCAAGAAGGC
GAGCGACAAGAAGATCGGCGAGAAGATTACGTGGGCGTCATTGCCTCCTTCACATGGCAAGAAGGGCAGCTCCGGCGACC
ATGAGGTGATTTCGCCTAGAGGATCACATGGCAAGAAGAGCAGCTCCGGCGACCATGAGGTGATTTCGCCCAGAAGATCA
CGTGGCAAGAAAAGTAGTAGCTCCGGCGACCATGACGTGATTTCACCTAGAAGCCATGCACATGGGAAGAAAGGGTAA--
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>chr2B_1_TraesCS2B01G214900
CAGCGGAAACTCAGCTAGCGCTCGCGAATCACTGTGTACGTAGTACTACTTGACATTCTACTACTAAATCATGAGCAGAG
AAAGTTCAAAAAAAAGAAAAAGAAAATCATGAGCAGAGAAAATTGGGCAACCGGCAGCGAAATCACGAGGGA----GACG
TCGCGACCTCGCGCCGCTGGTGCAATAAATGCGGTTATGCGGGCAACCCGTACGCTGCTCGTCAGGTCATGATCGAGCTA
GTAGTTGGAGACTCTTTATTTTTCGGGCGGAAATAGCTGGAGACTTGGAGTCAATTTATCTGCACAGGCTGATAAACCAA
CTGTACGAGTAGTATTTATGACTATGTGCGAGCTCGACGCGCAACCAACTGGATCGACGGCAAG--GGTGTCTGGATACG
CAGTTACGTACGCATGCACCTCGTGGATTACTTGGTGCCGATTCGTATAAAACTATGGGTT----TGCTGTTATGCTTAG
AAATTGCTATCGGTCCGTCGGTTGATCGAGTTATACGTCACCACTGATTCAGTCTCTCTACAAATCGTGATTATCCGGTT
GCGCCTTTTTT--TTATTG-----TAAAACCGTGGAACGTCGAGCATATA---------ACAATTTCCCATGCATACAAT
TCAGAAGCAGACGTACGCTCTGTATAAATTATGGGACGTGTCGCTTTGCTCTCTGTGTGAAGATTCTCACCGTTTTCT--
-TTCTTGTTGTTAACGGCTTAACGCGGACACAGTACTGGAGTAGTATTTCCCATCTCTACACCGGGTCAATCGTGGGAAG
CAAGGCATGAAAATTGAATAGTACTATCTGACACCTCCACGCTTGACCCAGCTCGCGCCAGGACACCGCCCCGCGGCCTT
CAAATGATCGAGTCGCCCCCGAC-------TT-------CCAGTCACCCAGCCCCACAGAGGAACAGCTAAACAAATTAT
GAGCGACACCGGAGCAAGTTACAACCAGCTT------GGAAGTTA-TCCCCTTTATAAGCAGTTCTTGACAGGGAGTGGT
AAACGGTATTATGCCGGAAGAAATGGTGTTCTGCGGCACAGCCAGCTTCAAGGACGTTGACAAGGGCGAGCCGATGAGCG
GCGGAGGCAAGCAGGCGCAGAGGAAGGAGAAGAAGAAGCCGGTCACCGGGAAGAAGGAGAACCCGTACGCGTCGCGCGGG
CTGGACAAGTTCTCCATGGTGCTCGCGGAGCTCGAGTCCCGGCGGGAGAAGGTCCTGCGCCGCGTCGACGGCGGCGACCA
CGTCATGGTCCGGTTCGTGCAGTCCGAGACCAAGGGCTGGGTGCCCATCGTCGTCAAGCTGCCGACGGAAGAGCCCGCCG
CCAAGGCCGAGCCCAAGAAGAAGTGCAAGTCCAAGCTGGCCGTGTCGTCCACGCCTCCGCCCACGCAGCCGCCGTCGCCG
CGGACGGAGTCCACCAGCCCGAGAGGAGGAGACGACGCCGTCAAGCACGCCGCGGCTGTGACGGCGCCGGCTGTCGCTGC
GGCGCCGACGAAGAAGAAGGCTTCGGCCGCCGGGAGGTGGTCGTGGGCGGACAAGGCGATTAGGCCGAGCCAGTACTGGC
CGTTCGTGGCGGTGCTGCTCTTGCTGAGCCTGGTCGTGTTCGGGAGGATGTTCGCCATCTGCTGCACCTCCATCTGGTGG
TACCTCGTGCCCATCTTGAACGGCGAGGATGGAGGACCCAGATCCATGGGCAAGACCGGCAGGCATCTCGGCAAGAAGGC
GAGCGACAAGAAGATCGGCGAGAAGATTACGTGGGCGTCATTGCCTCCTTCACATGGCAAGAAGGGCAGCTCCGGCGACC
ATGAGGTGATTTCGCCTAGAGGATCACATGGCAAGAAGAGCAGCTCCGGCGACCATGAGGTGATTTCGCCCAGAAGATCA
CGTGGCAAGAAAAGTAGTAGCTCCGGCGACCATGACGTGATTTCACCTAGAAGCCATGCACATGGGAAGAAAGGGTAAGT
CGCACTTAGAAGGTCGTGTTGTAAATAGTCGTCAAACAGAGTGGCGAGAAAGATAAAATTTCAGGTTTTATCTTTCCTAC
CATTCTCCTGTTTTTGTTGTTCTTTTTCTCAAAGGAAAAAAGAGCTGATTGTAGATTTGTAATG----GAAGTGTCCATG
TACACCAGATCAGCCCCTTCATGTGTGGCTACTCAAACAAAGTGTTCAGAAAATTCGGGCAACATGCGCAACGGTTTTAT
GTATAAATTCAGTACACTAAGAACTTCTTGGTTCAGGCTGGCCACGTGTGATCCCGATACATCGTTGATTTGATCATTGG
TGCATGCCAATTGCATATGATTTGGTGCTTGACATCCTCTTGGATGACTGCTGAAAATGCGAAGGCGTTTAGCCATATGA
CGGAGATAAACATGTGAATTGCTTATTGATTGTGATGTTTGATGTCATACATTGGTCATTGGTCTACTTCGTTACCGTCA
CAAAATAGGCTTTCGTCTCGCTTTTTTCCATCTCTACTTCTCTACTACTTTTTACTAATTTTACTTAAAAAATAAGTAAT
GTTCTTTTCCTGTGAGGCAAAACTCTTTGTCAGTGGGTCCCC-TCTCATCGCAATTCCCCATAGATTTATT-CATCTAGA
CTATTTATTTTTCCACCACATCATATTTGATCTCACCTTCCCCGTGCGTCCCTCAATCATGTTGATTACTTACCTTCTGA
ACCAATTTCACCTGAATATACTTAGCAAATTTTTCATCAAAATATAAGGTAAATCACCGCACCTTTCTGATGCGCTGCTT
AATCATATTAATTACTTGCTCTCTAAACCAATTCCACCTTAATTTACTTACCAAACTTCTCATCAAATTATAAAGTAAAT
CACGGGCAGAATTTGGTAAACATTTATTTGCACAACCGTATTAATATGGATAGCTAATTCAGGAGCTAACATACTAAAAT
ATTCATATCCCGTTGCAACGCACGAACATGGTTCTACTATAAAT
>chr2D_1
CAGCGGAAACTCAGCTAGCGCTCGCGAATCACTGCGTACG------TACCTGACATTCTGCTACT---------------
-----------------------AAATCATGAGCAGAGAAAATTGGGCAACCGGCAGGGAAATCACGAGGGTGACCGACG
TCGTGACCTCGCGCCGCTGGTGGAATCAATGCGG--------GCAACCCGTACGCTGCTCATCAGGTCATGATCGAGCTA
GTTGGAGA---------------CGGGCGGAACTAGCTGGAGACTTGGAGTCAATTTATCTGCACAGGCTGATAAACCAA
CTGTACGAGTAGTTTTTAT------GTGCGAGCTCGACGGGCAACCAACAGGATCGACGGCAAG--GGTGTCCGGATACG
CAGTTACGTACGCATGCACCTCGTGGATTACTTGGTGCATATTCGTACAAAAACTATGGGTTTGATGATGTTA--CTTAG
AAATTGTTATCGATCCGTCGGTTGATCGAGTTATACGTCACCACTGATACAGTCTCTCTACAAATCGTGATTATCCGGTT
GCACCTTTTTT--TATTATTAAATTAAAACCGTGGAACGTCGAGCATAGA---------ACAATTTCCCATGCATACAAT
TCAGAAGCAGACGTACGCTCTGTATAAATTATGGGACGTGTCGCTTTGCTCTCTGTCTGAAGATTCTCACCGTTTTCTTT
CTTCTTGTTGTTAACGGCTTAACGCGGACACAGTACTGGAGTAGTATTTCCCATCTCTACACCAGGTCAATCGTGGCAAG
CAAGGCATGAAAATTGAATAGTACTATCTGACACCTCCGCGCTTGACCCAGCGCGCGCCAGGACACCGCCCCGCGGCCTT
CAAATGATCGAGTCGCCCCCGAC-------TTCCAGATTCCAGTCACCCAGCCCCACAGAGGAACAGCTAAACAAATTAA
GAGCGACACCGGAGCAAGTTACAGCCAGCTTCAGCTTGGAAGTTA-TCCCCTTTATAAGCAGTTCTTGACAGGGAGTGGT
AAACGGTATTATGCCGGAAGAAATGGTGCTCTGCGGCACGGCCAGCTTCAAGGACGTTGACAAGGAAGAGCCGATGAGTG
GCGGAGGCAAGCAGGCGCAGAGGAAGGAGAAGAAGAAGCCGGGCGCCGGGAAGAAGGAGAACCCGTACGCGTCGCGCGGG
CTCGACAAGTTCTCCATGGTGCTCGCGGAGCTCGAGTCCCGGCGGGAGAAGGTCCTGCGCCGCGTCGACGGCGGCGACCA
CGTCATGGTCCGGTTCGTGCAGTCCGAGACCAAGGGCTGGGTGCCCATCGTCGTCAAGCTGCCCGCGGAAGAGCCCGCCG
CCAAGGCCGAGCCAAAGAAGAAGTGCAAGTTCAAGCTGGCCGTCTCGTCCACGCCTCCGCCCACGCAGCCGCCGTCGCCG
CGGACGGAGTCCACCAGCCCGAGAGGAGGAGACGACGCCGTCATGCACGTCGCGCCTGCGACGGCGCCGGCGGTCGCTGC
AGCGCCGACGAAGAAGAAGGCTTCGCCCGCCGGGAGGTGGTCGTGGGCGGACAAGGCGATTAGGCCGAGCCAGTACTGGC
CGTTCGTGGCGGTGCTGCTCTTGCTGAGCCTGGTCGTGTTCGGGAGGATGTTCGCCATCTGCTGCACCTCCATCTGGTGG
TACCTCGTGCCCATCTTGAACGGCGAGGATGGAGGACCGAGATCCATGGGCAAGACCGGCAGGCATCTCGGCAAGAAGGC
GAGCG--AAGAAGATCGGCGAGAAGATTACTTGGGCGTCATTGCCTCCTTCACATGGCAAGAAGGGCAGCTCTGGCGACC
ATGAGGTGATTTCGCCTAGAAGGTCACATGGCAAGAAGAGCAGCTCCGGCGACCATGAGGTGATTTCGCCCAGAAGATCA
CATGGCAAGAAAAGTAGTAGCTCCGGCGACCATGACGTGATTTCACCTAGAAGCCATGCACATGGGAAGAAAGGGTAATT
CGCACTTAGAAGGTCGTGTTGTAAATAGTCGTCAAACGGGGTGGCCAGAAAGATCAAATTTCAGGTTTTATCTTTCCTAC
CGTTCTCCGGTTTTTGTTGTTCTTTTTCTCAAAGGAAAAAAGAGCTGATTGTAGATTTGTAATG----GAAGTGTCCATG
TACACCAGATCAGCCCCTTCATGTGTGGCTACTCAAACAAAGTGTTCAGAAAATTCGGGCAACATGCGTAACGATTTTAG
GTATAAATTCCGTACACTAAGAACTTCTTGGTTCAGGCTGGCCACGTGTGATCCCGATACATCGTTGATTTGATCATTGG
TGCATGCCAATTGCATATGATTTGGTGCTTGACATCCTCTTGGATGACTGCTGAAAATGCAAAGGCGTTTAGCCATATGA
CGGAGATAAACATGTGAATTGCTGCTA-----TGATGTTTGATGTCACACATTGGTCATTGGTCTACTTTGTTACCGTCA
TAAAATAGGCTTTCGTCTCGCTTTTTTCTATCTCTACTTCTCTACTAGTATC------TTTTACTTAAAAAATAAGTAAT
GTT-------------GCAAAACTCTTTGTCAGTCGGTCCCCCTCTCATCACATCTCCCCATAGATTTATTTCATCCAGA
CT-TT--TTTTTCCAGCACATCATATTTGATCACACCTTCCCAGTGCACCCCTCAATCACGTTGATTACTTACCTTCTGA
ACCAATTTCACCTTAATATACTTACCAAATTTATCATCAAACTATAAGGTAAATCACCGCACTTTTCCAGTGCGCTGCTT
AATCGTATTAATTACTTACCCTCTATACCAATTTCACCTTAATTTGCT--------------------------------
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>chr2A_104
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-----------------------AAATCATGAGCAGAGAAAATTCGGCAACCGGCAGGGAAATCACGAGGGCGACCGACG
TCGCGACCTCGCGCCGCTGGTGGAATCAATGCGG--------GCAGCCCGTACGCTGC---TCAGGTCATGATCGAGCTA
GTTGAAGA---------------CGGGCGGAACTAGCTGGAGACTTGGAGTCAATTTATCTGCACAGGCTGATAAACCAA
CTGTACGAGTAGTATTTAT------GTGCGAGCTCGACGCGCAACCAACAGGATCGACGGCAAGGAGGTGTCCGGATACG
CAGTTACGTACGCATGCACCTCATGGATTACCTGGTGCAGATCCGTACGAAACTATGGTTT----TGCTGTTA--CTTAG
AAATCGTTATCGATCCGTCCGTTGATCGAGTTATACGTCACCACTGATACAGTCTCTAG--AAATCGTGATTATCCGGTT
GCCCTTTTTTTATTATTATAAATTAAAAACCGCGGAACGTCGAGCATATAACAATCCGGACAATTCCCCATGCATACAAT
TCAGAAGAAGACGTACGCTCTGTATAAATTATGGGACGTGTC---------------TGAAGATTCTCACCGTTTTCT--
-TTCTTGTTGTTAACGGCTTAACGCGGACACAGCACTGGAGTAGTATTTCCCATCTCGACACCGGGTCAATCGTGGCAAG
CAAGGCATGAAAATTGAATAGTACTATCTGACACCTCCGCGCTTGACCCAGCTTGCGCCAGGACACCGCCCCGCGGCCTT
CAAATGATCGAGTCGCCCCCAATTTCCACATT-------CCAGTCACCCAGCCCCACAGAGGAACAGCTAAACAAATTAC
GAGCGACACCGGAGCAAGTTACAGCCAGGTTCAGCTTGGAAGTTAATCCCCTTTATAAGCCGTTCTTGACAGGGAGTGGT
AAACGGTATTATGCCGGAAGAAATGGTGCTCTGCGGCACGGCCAGCTTCAAGGACGTTGACAAGGGCGAGCCGACGAGCG
GCGGAGGCAAGCAGGCGCAGAGGAAGGAGAAGAAGAAGCCGGGCGCCGGGAAGAAGGAGAACCCGTACGCGTCGCGCGGG
CTCGACAAGTTCTCCATGGTGCTCGCGGAGCTCGAGTCCCGGCGGGAGAAGGTCCTGCGCCGCGTCGACGGCGGCGACCA
TGTCATGGTCCGGTTCGTGCAGTCCGAGACCAAGGGCTGGGTGCCCATCGTCGTCAAGCTGCCCGCGGAAGAGCCCGCCG
CCAAGGCCGAGCCCAAGAAGAAGTGCAAGTTCAAGCTGGCCGTCTCGCCCACGCCTCCGCCCACGCAGCCGCCGTCGCCG
CGGACGGAGTCCACCAGCCCGAGAGGAGGAGACGACGCCGTCATGCACGTCGCGGCTGCGACGGCGCCGGCTGTCGCCGC
GGCGCCGGCGAAGAAGAAGGCTTCGGCCGCCGGGAGGTGGCCGTGGGCGGACAAGGCGATCAGGCCGAGCCAGTACTGGC
CGTTCGTGGCGATGCTGCTGCTGGTGAGCCTGGTCGTGTTCGGGAGGATGTTCGCCATCTGCTGCACCTCCATCTGGTGG
TACCTCGTGCCCATCTTGAACGGCGAGGATGGAGGACCGAGATCCATGGGCAAGACCGGCAGGCATCTCGGCAAGAAGGC
GAGCGACAAGAAGATCGGCGAGAAGATTACTTGGGCGTCATTGCCTCCTTCACATGGCAAGAAGGGCAGCTCCGGCGACC
ATGAGATGATTTCGCCTAGAGGATCACATGGCAAGAAGAGCAGCTCCGGCGACCATGAGGTGATCTCGCCCAGA---TCA
CATGGCAAGAAAAGTAGTAGCTCCGGCGACCACGACGTGATTTCACCCAGAAGCCATGCACATGGGAAGAAAGGGTAATT
CGCACTTAGAAGGTCGTGTTGTAAATAGTCGTCAAACAGAGTGGCCAGAAAGATCAAATTTCAGGTTTTATCTTTCCTAC
CGTTCTCCGGTTTTTGTTGTTCTTTTTCT--AAGGAAAAAAGAGCTGATTGTAGATTTGTAATGCATGGAAGTGTCCATG
TACACCAGATCAGCCCCTTCATGTGTGGCTACTCAAACAAAGTGTTCAGAAAATTCGGGCAACATGCGCAACGATTTTAG
GCATAAATTCCGTACACTAGGAACTTCTTGGTTCAGGCTGGCCACGTGCGATCCCGATACATCGTTGATTTGATCATTGG
TGCATGCCAATTGCATATGATTTGGTGCTTGACATCCTCTTGGATGACTGCTGAAAATGCAAAGGCGTTTAGCCATATGA
CGGGGATAAACATGTGAATCGCTGATTGGCTGTGATGTTTGATGTCATACATTGGTCATTGGTCTACTTTGTTACCGTTA
CAAAATAGGCTTTCGTCTCGCTTTTTTCTATCTCTACTTCTCTAATACTTTTTACTAATTTTACTTAAAAAATAAGTAAT
GC------------AGGCAAAACTCTTTGTCAGTCGGTCCCTCTCTCATCACATCTCCCCATAGATTTATTTCATCCAGA
CTATT--TTTTTCCACCGCATCATATTTGATCGCACCTTCCCAATGCGCCCCTCAATCACATTGATTACTTACCTTTTGA
ACCAATTTCATCTTAATATACTTACCAAATTTCTCATCAAAATATAAGGTAAATCACCGCACCTTTCCCGTGTGCCGCTT
AATCATATTAATTACTTACCCTCTAAACCAATTCCATCTTAATTTACTTACCAAACTTCTCA-CAAACTATAAAGGCGGG
----------ATTTGGTAAACATTTATTTGCACAACCGCATTAATATGGACAGCTAATTCACGAGCTAACATACTAGAAT
ATTCGTATCCCGTTGCAACGCACGAACATGGTTCTACTATA---
>SNPs
----------------------------------S-----SSSSSS---S---------S-----SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS----------------------------------S-------------S--------
----------------------S---S-------SSSSSSSS------------------S-------------------
--S-SS-SSSSSSSSSSSSSSSS---------S-----------------------------------------------
-------------------SSSSSS------------------------S----------------------S-------
--------------------------------------S--------S-------------------------SS-----
------S-----S-----------------------------------S-------------------------------
--S-----------SS-SS-------------------------------------------------------------
--------------------------------------------------------S-----------------------
----------------------------------------------------------------------------S---
--------------------------------------S-----------------------------------------
-------------------------------------------------------------------------------S
-----------------------S--------------------------------------------------------
----------------------------S----------S----------------------------------------
------------------------------------------S-S-----------------------------------
--S-----------------------------------------------------------------------------
---------------------------------------------------------------SS---------------
------------------------------S------------S------------------------------------
-------------------------------------------S-----S--------S---------------------
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--------------------------------------S-----------------------------------------
------------------------------S-------------------------------------------------
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-S----------------------------------------------------------------------------S-
---------------------------------------------S--------S-------------------------
-S------S-----------------------------------------------------------------------
-------------------------------------------------------------------------S-----S
----------S---------------------------------------------------------------------
------------------------------------------------------------S-------------------
-----------------------S----SS---------------------------------------S----------
----------------------------S---------------------------------------------------
---SSSSSSSSSSS--------------------S---------------S--SS---------------------S---
-----SS-------------------------S---------S-----S----------S--------------------
-------------S----------S-------S----------------------------------SSS----------
-----------------S-S------------------------------------------S----S-------SSSSS
SSSSSSSSSS----------------------------S-----------S----------S--------------S---
----S------------------------------------SSS
>forward_41
---------------------TCGCGAATCACTGTGTACGT---------------------------------------
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>reverse_1719
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--------------------------------------CAGATCCATGGGCAAGACCG----------------------
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>forward_697
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-------------------------------------GTGTCGCTTTGCTCTCTGTG-----------------------
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>reverse_2683
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------------------------------------------CGTGCGTCCCTCAATCATGT------------------
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