>input_sequence_64729
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--------------ATGAGGGGAGGTACTGAATCTGCTTATGCACTTACTTTGTGTGAGATGCCTGTCAGATATTGGTTG
CAAAACA----CTCTCATCTTATTAAAAGCATGATCGTTGATCTGTAAAAGACATATATAATGAAGAATGTTTATAAGTT
TTTTTTAAAACGTCAAGAGTGTTTATAAGTACATATCTCTTGGAGAAGTATTTATCTTAGTTTAACTAAATTCACTGTTT
TGTGTTCCATAGGAAGCTCAAACGAATATTGCAGTTGCCAAGTGTGCCTCGGCAAGTACACACTACTTGGCGATGAAGAA
AATCCAAGGTTGGCAATGTTCGAAAGACGCCTTCCCTTCTTTGGTTGTGGAATTGGATGGTGTTGGTGAGGCAGTCTACT
CCTTCATTCTTTCATTCAGTTATTGTTTACTGTATTAAAATTATTGCAGTTTTCTTTTAGGTTTCCTGTGCCCGTTAATT
TGGTACATAGCAGCTCTTCTTTATTGCTGCAAGTACTACAACCGTGATCCTCGAGAACGGCCTGGGCTTGCCGCTTCTGC
TCTTCTGGTTAGTTTTTATTCGTCATACACGTGTGGAGCATATCATGTCCTGTTAGATTTAGTATATGACATACAAAAGC
AATAATTC-TTTTTGCCTGTTTAACAAGTTAGTCAATCATTCATCGGTGCACATTATCATAATTCATGGTTGAATTGCCT
GCATGGCCTTCTTTACTTCCTTGTTATGTACGGGCATTGTAAATCTAATATACAAACTCATCAATGTGCTTCTCCAGTTT
TTTCA-TTTGTTTTCTTGTACACTGTTAGCAATTGAGTTTTCTTTCTTATGTTTCCTCTGGTTTGGTGTGTGCAGGCAAT
CATGTTTACAGCAGCGACTATCATTATCCTTTCTGTTTTACTGGTAATGTGTGCACACAAACGATTCTTGAATAGCTGTG
GTAGCTGA------------------------------------------------------------------------
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>chr1A_1_TraesCS1A01G120400
TCAGGGACAAGTCAAAGTGGATCTCCATGAGGTTTAAAATTTGCCAT-GCACCGCGTTCCTGTTGCCTCCGCCTCGTCCA
CAATCTTTCCCGTTGGGTTTTGAGGTGTGAGCTTGTTTCCATCAAGTTCTTTAGTAAAACCACATTGGCCTTGACAATTT
ATGAGTGTGTGTGCCAGTACACCATCTAAGCCCCCCTCCCCCCTCTGCTTCTTTCAGTTGAACCCACTTCATATGAAAGT
GCTTCCAATAGTAGCACTAAAACTATCATCATCTACAGGAAAAGTCAAAGCTGTTGTCCATGAGGCGCAAACTTTGAGTT
TGTCACAATTCT--------------------------------------------------------------------
----------------------------------------------------------------CTTAGGCAAGTTTGAT
CAAGTCAGTAAAATTTGGTTCATTGCCACAGTTTATGCGTGCCCAAAGGTTTGTTGAGTTGTCAAGATTAGCTTAGGCAA
TCTCAGAAACTCACTTGTGACGTGTCTTGTTTTTCTCTGAGACAAGTTAGGCAAAAATGTTTGACAAACTTAATCACTCC
AAGGCTGTGAACCGCACAAGCCTATATCATTTGGATACAGTTCTACCCTGCTATATTTTCTTGATGAAAATGGTCTGAAA
AGAATTGTTGCGTCAGTGAGCTGTGTACTTCCCATTCGTTGTGGGAATTGCTCATCGCATTTATGTAATGAATGAATAGC
TAGTTCAATTGCACTCGATATATTTCTGAATTGCAACATTTGTACAGAATCATCATCTCTGTAGTGCA-CTATCTAAAAC
TGCTATTTGTATCGAATACACTTTATTCTACATAACTAGATTAGATGCCACATGATTTTCCTGCCATTTTCTCATGTTTC
TGTGCACCTGCTTAATGTTTGTGCTAATTACTCACATTTCGTTTGTGCAGCTGCTTGATGTGATGATAGCTCTTAGATCA
TAGTTTACATTAGCCATTACAGCAAGGAGTCCTGAAATGCTGAAAAGCTCCATGTTTCTTCCTGCTGGTTCCTTGACCAA
ACAACTGTAGTATTATGAGGGGAGGTACTGAATCTGCTTATGCACTTACTTTGTGTGAGATGCCTGTCAGATATTGGTTG
CAAAACA----CTCTCATCTTATTAAAAGCATGATCGTTGATCTGTAAAAGACATATATAATGAAGAATGTTTATAAGTT
TTTTTTAAAACGTCAAGAGTGTTTATAAGTACATATCTCTTGGAGAAGTATTTATCTTAGTTTAACTAAATTCACTGTTT
TGTGTTCCATAGGAAGCTCAAACGAATATTGCAGTTGCCAAGTGTGCCTCGGCAAGTACACACTACTTGGCGATGAAGAA
AATCCAAGGTTGGCAATGTTCGAAAGACGCCTTCCCTTCTTTGGTTGTGGAATTGGATGGTGTTGGTGAGGCAGTCTACT
CCTTCATTCTTTCATTCAGTTATTGTTTACTGTATTAAAATTATTGCAGTTTTCTTTTAGGTTTCCTGTGCCCGTTAATT
TGGTACATAGCAGCTCTTCTTTATTGCTGCAAGTACTACAACCGTGATCCTCGAGAACGGCCTGGGCTTGCCGCTTCTGC
TCTTCTGGTTAGTTTTTATTCGTCATACACGTGTGGAGCATATCATGTCCTGTTAGATTTAGTATATGACATACAAAAGC
AATAATTC-TTTTTGCCTGTTTAACAAGTTAGTCAATCATTCATCGGTGCACATTATCATAATTCATGGTTGAATTGCCT
GCATGGCCTTCTTTACTTCCTTGTTATGTACGGGCATTGTAAATCTAATATACAAACTCATCAATGTGCTTCTCCAGTTT
TTTCA-TTTGTTTTCTTGTACACTGTTAGCAATTGAGTTTTCTTTCTTATGTTTCCTCTGGTTTGGTGTGTGCAGGCAAT
CATGTTTACAGCAGCGACTATCATTATCCTTTCTGTTTTACTGGTAATGTGTGCACACAAACGATTCTTGAATAGCTGTG
GTAGCTGACTGAAGAATGTACAGTAGCTAGCTGCAAGATATTCAATGCATATCCTTGAGGAATGAAGTACTTGACAGAAA
TACTCTTTAGGTTCCTTTGTTAATCAATTGCTTAAATCCCCGGGAGAAATCGAAGGATTGCCCTTCGCGTGATAGCATGT
--------CCGTCATTTGCTCGAGTGTACATTACTGTACAATTTTGT-GCTGGCAGATGAACCTGTTGCATAACATTTTT
TGTACTGGCAACCAATTGGAATTTATTCTTTCAGGCGCAATCAGAAGATTATTATGCGCGAGCTGAGTAATATATCAGCT
ACCACCGAAATATATTATGTTTTACTTATATCATGCTGTCTATGTGAACTATGTATATAGTATTGCTGATTACTGAAATA
GTGTTTTTATGTATTGATGTC--TGATATATAAAAACCAAACTATATACATGTAATGCATACTGTATGATTGAATAAAAT
CTAGCCTCCATCATCAATTT------------------------------------------------------------
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--------------------------------------------------------------------TAGCTTCAAGAA
GGTGCATGTCTTCAACAGTTAACAACTAGCCAGCAATTTCTACGTT---AAGTTACGCACAATGCTAGCCAAACAGGTCT
TCTGTATTGTTGATACTTCAAAATACTTTGATATATAAAAACTGCAGTATCTTGCACCAATAGGTTAATATATTGTAGTT
TTCAATATTAGG--TTTTTACAATACCATTTGAAATTATGATAAATCCAGATCGACAAACATAGATGACACTGTCATAAG
TATTTGTATGACAT----------------------------GTGTATATGAATATCAGAATATGCAACGAAAAGCCTGA
ATTCATTCATCTTCATCAAGCCGCCTCCCTTCTCTTGACCTTAACCATGAGGCCGTTCTTGGTGTGGAGCACCACCGAAT
CGCTGGGCTCCACCACATGGCCGTCGACGAGCTCCACCCGGAAGTTATATATGATGGCTGCGGCGGCGATCTTGAGGTTG
GTGAGCCCCAGGTCCTTGCCCAGGGAACTCCTGGGCCCGCAGTTGAAGGCTGCGAACTTG
>chr1B_1
TCAGGGACAAGTCAAAGTGGATGTCCATGAAGTTTAAAATTTGCCATGGCACCGCGTTCCTGTTGCCTCCGCCTCGTCCA
CAATCTTTCCCGTTGGGTTTTGAGGTGTGAGCTTGTTTCCATCAAGTTC-TTCGTAAAACCACATTGGCCTTGACAATTT
ATGAGTGTG----CCAGTACACCATCTAAATCCTCCC-------CTGCTTCTTTCAGTTGAACCCACTTCAGATGAAAGT
GCTTCCAATAGTAGCACTAAAACTATCATCGTCTACAGGAAAAGTCAAAGCGGGTGTCCATGAGGTGCAAACTTTGAGTT
TGTCACAATTCT--------------------------------------------------------------------
----------------------------------------------------------------CTTACGCAAGTTTGAT
CAAGTCAGTAAAATT-GGTTCATTGCCACAGTTTAGGCATGCCCAAAGGTTTGTTGAGTTGTCAAGATTAGCTTAGGCAA
TCTCAGAAACTCACTTGTGACGTGTCTTGTTTTTCTCTGAGACAAGTTAGGCAAAAATGTTTGACAAACTTGATCACTCC
AAGGCTGTGAACCGCACAAGCCTATGTCATTTGGATACAGTTCTACCCTGCTATATTTTCTTGATGAAAATGGTCTGAAA
AGAATTGTTGCGTCGGTGAGCTGTGTACTTCCCGTTCGTTGTGAGAATTGCTCATCGCATTTATGTAATGAA----TAGC
TAGTTCAATTGCATTCGATATATTTCTGAATTGCAAAATTTGTACAGAATCATCATCTCTGTAGTGCA-CTATCTAAAAC
TGCTGTTTGTTTCGAATACACTTTATTCTACATAACTAGATTAGATGCCACATGATTTTCCTGCCATTTTCTCATGTTTC
TGTGCAGCTGCTTAATGTTTATGCTAATTACTCACATTTCGTTTATGCAGCTGCTTGATGTGATGATAGCTCTTAGATCA
TAGTTTACATTAGCCATTACAGCAAGGAGTCCTGAAATGCTGAAAAGCTCCATGTTTCTTCCTGCTGGTTCCTTGACCAA
ACAACTGTAGTATTATGAGGGGAGGTACTGAATCTGCTTATGCACTTACTTTGTGTGAGATGCCTGTCAGATATTGGTTG
CAAAACA----CT--TATCTTATTAAAAGCATGCTCGCTGATCTGTAAAAGACAAATATAATG-----------------
--------------AAGAGTGTTTATAAGTACATGTCACTTGGAGAAGTATTTATCTTAGTTTAACTAAATTCACTGTTT
TGTGTTCCATAGGAAACTCAAATGAATATTGCAGTTGCCAGGTGTGCCTCGGCAAGTACACACTACTTGGCGATGAAGAA
AATCCAAGATTGGCAATGTTCAAAAGACGCCTTCCCTTCTTTGGTTGTGGAATTGGATGGTGTTGGTGAGGCAGTCTACT
CCTTCATTCTTTCATTTGGTTATTGTTTACTGTATTAAATTTTTTGCAGTTTTCTTTTAGGTTTCCTGTGCCCGTTAATT
TGGTACATAGCAGCTCTTCTTTATTGCTGCAAGTACTACAACCGTGATCCTCGAGAACGGCCTGGGCTTGCCGCTTCTGC
TCTTCTGGTTAGTTTCTATTCGTCATACACATGCGGAGCATATCATGTCCTGTTAGATTTAGTATATGGCATACAGAAGC
AATAATTC-TTTTTGCATGTTTATTAAGTTAGTCAATCATTCATCGGTGCACATTATCATAATTCATGGTTGAATTGCCT
GCATGGCCTTCTTTACTTCCTTGTGATGTACGGGCATTTTAAATCTAATATACAAACTCATCAATGTGCTTCTCCAGTTT
TTTCA-TTCTTTTTCTTGTACACTGTTAGCAAATGAGTTTTCATTCTTATGTTTCCTCTGCTTTGGTGTGTGCAGGCAAT
CATGTTTACAGCAGCGACTATCATTACCCTTTCTGTTTTACTGGTAATGTGTACACACAAACGGTTCTTGAATAGCTGTG
GTAGCTGACTGAAGAATGTACAGTAGCTAGCTGCAAGATATTCGATGCATGTCCTTGAGGAATGAAGTACTTGACAGAAA
TACTCTTTAGGTTCCTTTGTTAATCAATTGCTTAAATCCACGGGAGAAATCGAAGGATTGCCCTTCGCGTGGTAGCATGT
CAGCATGTCCGTCATTTGCTCGAGTGTAGATTACTGTACAATTTTGT-GCTGGCAGATGAACCTGTTGCATAACATTTTT
TGTACTGGCAACCAATTGGAGTTTATTCTTTCAGGCACAATCAGAAGATTAC-ATGCGCGAGCTGAGTAATATATCAGCT
ACCACTGAAATA-ATTATGTTTTACTTATATCATGCTGTCTGTGTGAACTATGTATATAGTATTGCTGATTACTGAAATA
GTGTTTTTATGTATTGCTGTCCGTGATATATAAAAATCAAACTATATACATGTAATGCAT--------------------
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>chr1D_1
TCAGGGACAAGTCAAAGTGGATGCCCATGAGGTTTAAACTTTGCCATGGCACCGCGTTCCTGTTGCCTCCGCCTCGTCCA
CAATCTTTCCCATTGGGTTTTGAGGTGTGAGCTTGTTTCCATCAAATTC-TTAGTAAAACCACATTGGCCTTGACAATTT
ATGAGTGTG----CCAGTACACCATCTAAATCCTCCC-------CTGCTTCTTTCAGTTGAACCCACTTCAGACGAAAGT
GCTTCCAATAGTAGCACTAAAACTATCATCGTCTACAGGAAAAGTCAAAGCGGGTGTCCATGAGGTGAAAACTTTTAGTT
TGTCACAATTCTCTTAGGCTTTGTTCGGTTACACCCTGCCTGGAGGGGGTTGGAGGGGATTTGGGGGGGATTTGACTTAC
AGGGGAATCAATTTACTTCAATCCCTGTCAAACCCCTTTCAATTCCCTGTCAACCGAACGCAGCCTTAGGCAAGTTTAAT
CAAGTCAGTAAAATT-GGTTCATGGCCACGGTTTAGGCATGCCCAAAGGTTTGTTGAGTAGTCAAGATTAGCTTAGGCAA
TCTCAGAAACTCACTTGTGATGTGTCTTGTTTTTCTCTGAGACAAGTTAGGCAAAAATGTTTGACAAACTTAATCACTCC
AAGGCTGTGAACCGCACAAGCCTATATCATTTGGATACAGTTCTACCCTGCTATATGTTCTTGATGAAAATGGTCTGAAA
AGAATTGTTGCG---GTGAGCTGTGTACTTCCCGTTCGTTGTGGGAATTGCTCATCACATTTATGTAATGAATGAATAGC
TAGTTCAATTGCACTCGATATATTTCTGAATTACAACATTTGTACAGAATCATCATCTCTGTAGTGCAACTACCTAAAAC
TGCTGTTTGTTTTGAATACACTTTATTCTACATAACTAGATTAGACGCCACATGATTTTCCTGCCATTTTCTCATGTTTC
TGTGCAGCTGCTTAATGTTTATGCTAATTACTCACATTTCGTTTGTGCAGCTGCTTGATGTGATGATAGCTCTTAGACCA
TAGTTTACATTAGCCATTACAGCAAGGAGTCCTGAAATGCTGAAAAGCTCCATGTTTCTTCCTGCTGGTTCCTTGACCAA
ACAACTGTAGTATTATGAGGGGAGGTACTGAATCTGCTTATGCACTTACTTTGTGTGAGATGCCTGTCAGATATTGGTTG
CAAAACACACTCT--CATCTTATTAAAAGCATGCTCGTTGATCTGTAAAAGAC--ATATAATG-----------------
--------------AAGAGTGTTTATAAGTACATGTCTCTTGGAGAAGTATTTATCTTACTTTAACTAAATTCACTGTTT
TGTGTTCCATAGGAAACTCAAATGAATATTGCAGTTGCCAGGTGTGCCTCGGCAAGTACACACTACTTGGCGATGAAGAA
AATCCAAGATTGGCAATGTTCGAAAGACGCCTTCCCTTCTTTGGTTGTGGAATTGGATGGTGTTGGTGAGGCAGTCTACT
CCTTCATTCTTTCATTCGGTTATTGTTTACTGTATTAAAATTATTGCAGTTTTCTTTTAGGTTTCCTGTGCCCGTTAATT
TGGTACATAGCAGCTCTTCTTTATTGCTGCAAGTACTACAACCGTGATCCTCGAGAACGGCCTGGGCTTGCCGCTTCTGC
TCTTCTGGTTAGTTTGTATTCGTCATACACGTGC-------ATCATGTCCGGTTAGATTTAGTATATGATATACAGAAAC
AATAATTCTTTTTTGCCTGTTTAACAAGTTAATCATTCA----TCGGTGGACATTATCATAATTCATGCTTGAATTGCCT
GCAAGGCCTTCTTTACTTCCTTGTGATGTATGGGCATTTTAAATCTTATATACAAACTCATTAATGTGCTTCTCCAGTTT
TTTCTCTTTTTTTTCGTGTACACTGTTAGCAAATGAGTTTTCGTTCTTATGTTTCCTCTGCTTTGGTGTGTGCAGGCAAT
CATGTTTACAGCAGCGACTATCATTACCCTTTCTGTTTTACTGGTAATGTGTGTACACAAACGATTCTTGAATAGCTGTG
GTAGCTGACTGAAGAATGTACAGTAGCTAGCTGCAAGATATTCGATGCATATCCTCGAGGAATGAAGTACTT-ACATAAA
TACTCTTTAGGTTCCTTTGTTAATCAATTGCTTAAATCCACGGGAGAAATCGAAGGATTGCCCTTCGCGTGATAGCATGT
CAGCATGTCTGTCATTTGCTCGAGTGTAGATTACTGTACAATTTTGTTGCTGGCAGATGAACCTGTTGCATAACATTTTT
TGTACTGGCAACCAATTGGAATTTATTCTTTCAAGCGCAATCAGAAGATTAC-ATGCGCGAGCTGTGTAATATATCAGCT
ACCACCGAAATA-ATTATATTTTACTTATATCATGCTGTCTATGTGAACTATGTATATAGTATTGCTGATTACTGAAATA
GTGTTTTAATGTATTGCTGTCTGTGATATAT-AAAACCAAACTATATACATGTAATGCATACTGTATGATTGAATAAAAT
CTAGCCTTCATCATCAATTAGGCCCTGTTTGATAGCAAAGTATTTTCAAAGTATTTTGACAATACTACAGTTTTTCTAGT
TACTGTAGTTTTAATTACTTGACCTGTTTGGTCACCAATAAAAACTGTGATATTCAAACTAGAATATTCCCAAAACCAAA
GTATTCTCTGTCTAAAAAAAAGAACCCCGAACCTCTTTTTTAAAAATAGAGCAGGCGAAAAAAATGAGCTGGTCACACGT
CCACGTTTATCTTCTTCGATGGCTGTTTGCAACAACTCGCGTCGCACCGCCGTATTGCCTCCGGAGATGTTTCTGTCGGT
GGACGACCACAGCGAGATCAAAGGAGCCTCCCTCTTCTTCTTCTCCCACCTCTTGCACCGGTCGTCGGCCTTGACTTCTG
CGGCTGCTGGCTGCGCCGATCAGTACTCTTGCCTGGCCACCACGTCGGCGGAAGCTACTCTAAGAAGTAGACCATGGATT
ATTGGAAGGAAGTGACCATGTCGTGGAAGAAGGCCAAGCCGTTCATGCGCAGCTCCGGCCATGGTGATCAAGACGCCTAC
TATACACCGTGTTGCTGAGCGTTCTAATAGGAATCTACAAGCCTTGTGCATGCCTGCGCCCGGCTAGCTAGCTTCAAGAA
CGCGCATGTCTTCAACAGTTAACGGCTAGCCAGCAATTTCTACGTTGTTAAGTTACGCACAGTGCTAGCCAAACAGGTCT
TCTGTATTGTTGATACTTTAAAATACTTTGATATATAAAAACTGCAGTATCTTGCACCAACAGGTTAATATACTATAGTT
TTCAATACTTCGGTTTTTTACAATACCATTTGAAACTATGATAAATCCAGATCGACAAACATAGATGACACTGTCATAAG
TATTTGTATGACATGTAATTTGGTACTAATTCACTCCACTTTGTGTATATGAATATCAGAATATGCATCGAAAAGCCTGA
CTTCATTCATCTTCATCAAGCCACTTCCCTTCTCTTGAGCTTAACCATGAGGCCGTTCTTGGTGTGGAGCACCACCGAGT
CGCTGGGCTCCACCACATGGCCGTCGACGAGCTCCACCCGGAAGTTATATATGATGGCCGCGGCGGCGATCTTGAGGTTG
ATGAGCCCCAGGTCCTTGCCCAGGCAACTCCTGGGCCCGCAGTTGAAGGCTGCGAACTTG
>SNPs
----------------------S---------------------------------------------------------
-------------------------------------------------S------------------------------
---------SSSS----------------SS--S--SSSSSSSS---------------------------S--------
------------------------------S--------------------S-S-----------S--------------
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---------------S-------------------S--S-----------------------------------------
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--------------S------------------S----------------------------------------------
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----S-----S---------------------------------------------------------------------
------S-------------S-----------------------------------------------------------
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-------------SS------------------S--------------------S--------SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS--------------------S---------------------------------------------
---------------S------S-----------------S---------------------------------------
--------S-----------------------------------------------------------------------
-----------------S--------------------------------------------------------------
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---------------S-----------------S-----------------------------------------S----
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------------------------S-------------S-----------------------------------------
---------S----------------------S---------S-----------------S-------------------
--------------------------S-----------------------------------------------------
-------------------------------------------S------------------------------------
---------------------------------------S----------------------------------------
----------------------------S---------------------------------------------------
---------------------------------------------------SS---------------------------
------------S-------------------------------------------------------------------
----------------S---------------------------------------------------------------
-------S-----------S------------------------------------------------------------
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S-S--------------------SS------------------------------------S------------------
------------------S-----------------------------------------S-----------S-S-----
-------S-SS------------------------S--------------------------------------------
-------------------------------------------------------------------S------------
S---------------------S-S-------------S---------------------------------------S-
----------------------------------------------------------S---------------------
S-----------------------S-----------------------------------
>forward_306
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---------------------------------------------CAAAGCTGTTGTCCATGAGGC--------------
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>reverse_1981
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------------------------------------------------------------GTTTGGTGTGTGCAGGCAAT
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>forward_754
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-------------CAGTGAGCTGTGTACTTCCCA----------------------------------------------
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>reverse_2200
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---------------------------------------CCGGGAGAAATCGAAGGATTG--------------------
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