>input_sequence_64708
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-------------------------------------------------------------------------ATATATA
TGGCACCCCTTTCGCCATGTTCCAACACATGCATACTCAGCCACCAGCTGCATTATCTCCC-TCATCGACCCATCTCCTC
TAGCCACTCTACGTACGCAGCGCACTTGCCTCTCTGTCTCCCTCCCTCTCACATCCCAA------GCAGTAGCCGTCGCG
AGCGATCGAGATCCGCCATGGTTGCACACGCCAGCATCTACTGCAGCGCCGCCACCGCCATGGCGACGACGGCGAGGAGC
GGGCCGGCATACTCCGCCGTGGCTCCTAAGTCGTCGCCGAGGAATACCAAGAGAAGGAGCGGCAGGAAGGCGACGAGGAC
AACGGCCGGGCGGCGGCGCTGCGTGGAGGCCATCAGGAGGAAGATGGAAGCGCTGAGGCGGCTCGTCCCTAGCGGCGGCG
ATCACCGCAGCGACGAGATGGCGGAGGACGACGGCGTGGACGAGCTCCTGTTCCGCGCCGCCGACTACATCGTGCGGCTG
CAGGTGCAGGTGAAGGCGATGCAGCTCATGGTCGACGTGCTGGAGCACACCAAAGACTCTTGATTATTTATCCATTT---
CTACTATATAGGTCGTGTCGAGCAGAACAGATACATGTACACGCATACCAGTATAGGTACCCGCGTACGTATACAAATTG
TGTATTTTTTTCGATTTTGGGGGTCATTTCTTTCTTTCTTTCTCTTTCGGCGTTTTGGAGAAGTATGAAA----TACGTA
GGGGTTAATTATACGGGTGGGAATGGTTATTGGTTTATTCGTTAATTGCTGTGAACTTGCGTGAGTGCGTAC-----TAC
TTACGTGATGATGTAAATATGTATGCATGACTTTGATATATGTATACATACATATATACATCCGGTATATGATGCTACAA
T--GGAAATTTTGGTTGCTAGTATTTGTTTACGAATCACTATGACAGGACAATTATTCACT-------------------
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----------------------------------------------------------------------------CTTA
TGTGATGTTTGTTTCGAA--------------------------------------------------------------
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>chr1A_1_TraesCS1A01G106400
GATCCACGTCATGGCCTACCGATACATGTGCCGGCAGTGGCACAAGAAGCTC-------CATGTTGCCAGCGGATGACAG
TTGTCGATATCGACACGTGTTAGCGGAACATTCTAAT---CGTCGCGCAGATCAAGATCAAGGGTGTCGTGCACGTTACC
GTACCCAAGAATATATGTCAAAAGAGGAGAACATGTCAGGAAATCAGGCCCCCAAATCATGGAGATGGCATGCATGTGCA
ACGAATTTGATTAGTCCAATTAGTTAAATCGGCACTATGGTGCATACCATGATCAGCTCCCCGGAGGGGAACATGGTGGC
ACAT-----------TATCTCAACCAGTACTTAACTATAGTTAACATAGGGAGGAGGGAGATGTATTGCATGTAGTAGTA
------TATATCGTGCTTAGCAAACTATGTATGTGTGCACATGACGCAGGAGACCTTTTCCTGTGCTGCATGCACTTCTG
CTGAGGTGGCAGGGAGGTAGAGTGGTGTGGTGCATGTGGGCCCTTGACACATCACACATG----CATGCATGCATATGCA
TGGTAGTGGCGCCTTGAGGAGGATCATGCAGTGGAGGGAGGGATACAGGGTGTTCTGATGAGGAGATCATAAAAGGAGTG
CATGCATGGTTGGTTGGTGGTGTATGCATGAGAGGTGTCT-GCCTGTGTTTGGATGGACGAGAAGATCAGAAATGTTTGT
TGTTTAAGATATATCATGTGGTGGCATGTGGCCTTGAGTTAGGAGGAACATGCATGCATGCCCTCTCCCTCAAGCAATAC
CTCCCATGCATGCCAACATGCTGCCACCCCTACTCTCTCACTAGCATCACAGAAATAAAATAGTATATGAATATATGATC
CACATAAATATACGTATATGATCTAGCTATGCTTGATGCATGTGCATGCTTAATCACAGGACACAACATGGGTTCTTTAT
GCTCTGACACCTAATTCCCCCA-ATAGCTCACCCCTTCCAACCTAGCAGCTCCAACGCGGCCTCTCCTCTCCTATATATA
TGGCACCCCTTTCGCCATGTTCCAACACATGCATACTCAGCCACCAGCTGCATTATCTCCC-TCATCGACCCATCTCCTC
TAGCCACTCTACGTACGCAGCGCACTTGCCTCTCTGTCTCCCTCCCTCTCACATCCCAA------GCAGTAGCCGTCGCG
AGCGATCGAGATCCGCCATGGTTGCACACGCCAGCATCTACTGCAGCGCCGCCACCGCCATGGCGACGACGGCGAGGAGC
GGGCCGGCATACTCCGCCGTGGCTCCTAAGTCGTCGCCGAGGAATACCAAGAGAAGGAGCGGCAGGAAGGCGACGAGGAC
AACGGCCGGGCGGCGGCGCTGCGTGGAGGCCATCAGGAGGAAGATGGAAGCGCTGAGGCGGCTCGTCCCTAGCGGCGGCG
ATCACCGCAGCGACGAGATGGCGGAGGACGACGGCGTGGACGAGCTCCTGTTCCGCGCCGCCGACTACATCGTGCGGCTG
CAGGTGCAGGTGAAGGCGATGCAGCTCATGGTCGACGTGCTGGAGCACACCAAAGACTCTTGATTATTTATCCATTT---
CTACTATATAGGTCGTGTCGAGCAGAACAGATACATGTACACGCATACCAGTATAGGTACCCGCGTACGTATACAAATTG
TGTATTTTTTTCGATTTTGGGGGTCATTTCTTTCTTTCTTTCTCTTTCGGCGTTTTGGAGAAGTATGAAA----TACGTA
GGGGTTAATTATACGGGTGGGAATGGTTATTGGTTTATTCGTTAATTGCTGTGAACTTGCGTGAGTGCGTAC-----TAC
TTACGTGATGATGTAAATATGTATGCATGACTTTGATATATGTATACATACATATATACATCCGGTATATGATGCTACAA
T--GGAAATTTTGGTTGCTAGTATTTGTTTACGAATCACTATGACAGGACAATTATTCACT-------------------
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----------------------------------------------------------------------------CTTA
TGTGATGTTTGTTTCGAAATAAATGTTTATTTTGGCGGGTTTGCTATTTCTCAATTACCTGAGAATAGAAAACGGGTTAG
TCAGAGAACCAACTAGTGGTTTGATGGTTAAGAGGGCGGTGGTACCCCTAACCTCCCATGGTTCGAACCCCATGGTTGAG
GTTTTGGTGTCTCGTTTATTCTTTCAATAGGAGGTGACTTTCTATCAATGGTGATACCAATGCGACGTGGCTAGCCACTG
ATGCACACGAGGGGGTGGATGTGCTTTTCGTTTTGTCCGACTCTCGGATTGAACAACAACAAAGCTCGACACGAGGATGC
CATCAAGGGCTTATCGAGACCTCGCCGAAGACGGGGACAACGTGGATCGCCGCCGGAGGAAGAGGGTAGATTGGAGGAGG
AAGATATGGTGATGGCTGCTAGATTTCAATCCAATATTAGG-AAAAACTTTTTCCCAAGGCAGTTGTTCCTTAGGTGCTT
CATTATTTTAGAATTTATTTTTCAGGAGCATGCAAACTGTGTGCCTTAGCTTTAGAGAGGATAGATGTAAAATACAAGAA
TTATAGACAAACTCCCATCACACCTCGATGAGAAGTAAACTCCCCTCCAGCTTGAACGCGCACATTACAACCACAACACA
CAAGATCATATCCTAAACTGGCCATTAAAGCCGCATCTCAACCAACACCGGCCATCTCCAAAGAGCAACAACTTC-AAAG
AACTATCCTTGCCGACGCACCAGCCACCCCTTGAATGGCCTAAAAGAGTCGGTAGTGTGTGGTGGGACT-CAGACAACTA
CGAGAAAGTCATCATCTTGGACTCACCCCGTACATAGC---TAGCGCCCCTAGACCCTTGAGAACGGTCCATAACAGCAG
CGCGCACCATAGGAACGCAACTTAGAACCTCCAAGCCATGTCTCCAAATACGATGCTCCAAACAGAGGGATGGCGTCGAG
GATGCCGCCATCGTCATTCTGGATCCGAACATAAGCTTTCACCTGGAGAAAACAAACCAAGTGA
>chr1D_1
GATCGACGTCATCGCCTACCGATACATGTGCCGGCAG---CACAAGGAGCCC-------TATGTTGCCAGCAGACAACAG
TTGGCAATATTGACACGTGTTAGCGGAACATTCCAAT---CGTCGCGCGAATCAAGATCATGGGTGTCGTGCACGTTACC
GTACCCAAGAATATATGTCAAAAGAGGAGAACATGTCAGGAAATCAGGCCCCCAAATCATGGAGATGGTCTGCATGTGCA
GCGAATTTGATTAGCCCAATTAGTTAAATAAGCACAATGGTGCATACCATGATCAGCTCCCCAGAGGGGAACATGGTGGC
ACATTATTATGACATTATCTCAACCAGTGCTTAAGTATAGTTAACATAGGGAGGATGGAGATGTATTACATGTAGTA---
------TATATCGTGCTTAGCAAACTATGTATGTGTGCACATGACGCAGGAGAC--TTTTCTGTGCTGCATGCACTTTTG
CTGAGGTGGCAGGGGGTTAGAGTGGTGTGGTGCATGTGGGCCCTTGACACATCACACATGCATACATGCATGCATATGCA
TGGTAGTGGCGCCTTGAGGAGGATCATGCAGTGGAGGGAGGGGTACAGGGTGTTCTGATGAGGAGATTA-AAAGGGAGTG
CATGCATGGTTGGTTGGTGGTGTATG----AGAGGTGTCACGCCTGTGTTTGGATGGACGAGAAGATCAGAAATGTTTGT
TGTTTAAGATAT--CATGCGGTGGCATGTGGCCTTGAGTTAGGAGGAACATGCATGC----CCTCTCCCTCAAGCAATAC
CTCCCATGCATGCCAACATGCTTCCACCCCTACTCTCTCACTAGCATCACATAAATAAAGTAGGATATGAATATATGATC
CACATAAATATACGTATATGATCTAGCTATGCTTGATGCATGTGCATGCTTAATCACAGGACACAACATGGGTTCTTTAT
GCTCTGACACCTAATTCCCCCACATATCTCACCCCTTCCAACCTAGCAGCTCCAACGCGGCCCCTCCTCTCC--TATATA
TGGCACCCCTTTCGCCATGTTCCAACACATGCATACTCAGCCACCAGCTGCATTATCTCCC-TCATCGATCCATCTCCTC
TAGCCACTCTACGTACGCA-----CTTGCCTCTGTGCG----TCTATCTCTCATTCCAA------GTAGTAGCCGTCGCG
ATCGATCGAGATCCGCCATGGTTGCACACGCCAGCATCTACTGCAACGCCGCCACCACCA---CGACGACGGCGAGGAGC
GGGCTGGCATACTCCGCCGTGGCCCCTAAGTCGTCGCCGAGGAATACCAAGAGAAGGAGCGGCAGGAAGGCGACGAGGAC
AACGGCCGGGCGGCGGCGCTGCGTGGAGGCGATCAGGAGGAAGATGGAAGCGCTGAGGCGGCTCGTCCCTAGCGGCGGCG
ATCACCGCAGCAACGACGAGGTGGAGGACGACGGCGTGGACGAGCTCCTGTTCCGCGCCGCCGACTACATCGTGCGGCTG
CAGGTGCAGGTGAAGGCGATGCAGCTCATGGTCGACGTGCTGGAGCACACCAAAGACTCTTGATTATTTATTCATTTCTA
CTAC----TAGGTCGTGTCGAGCAGAACAGATACATGTACACGCATACCAGTATAGGTACCCGCGTACGTATACAAATTG
TGTATTTT-TTCGATTTGGGGGGTTATTT-TTTCTTTCTTTCTCTTTCGGTGTTTTGGAGAAGTATGAAATACGTACGTA
GGGGTTAATTATACGGGTGGGAATGGT-ATTGGTTTATTCGTTAATTGTTGTGAACTTGCGTGAGTGCGTACTGGAGTAC
TTACGTAATGGTGTAAATATGTATACATGAGTTTGATATATGTATACATACATATATACATCGGGTATATGATGCTACAA
TATGGAAATTTTGGTTGCTAGTATTTATTTACAAATCACTATGACAGGACAATA--------------------------
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------------------------------------------------------------------------TTTACTTA
TGTGATGTTTGTTTCGGAATAAATGTTTATTTTGGTGGGTTTGCTATTTCTCAATTACCTGAGAATAGAAATCGGATTAG
TCAGAGAATCAACTAGTGGTTTGATGGTTAAGAGGATGGTGGTA-TCCTAACCTCCCATG--------------------
----------------------------------------------------AATACCAATGCGACGTGGCTAGCCGCCG
ACGCGCACGAGGGGGTGGATGTGCTTTTCGTTTTGTCTGCCTCTCGGATTAAACAACAACAAAGCTCGACACAAGGATGC
CATCAATGGCTTATCGAGACCTCGCCGGAGGCGGGAACAACACGGATCGCCGCAGGAGGAGA---GTAGATTGGAGGAGG
AAGATATGGTGATGGCTGCTGGATTTCAGTCCAATGTTAGG-AAAATCGTTTTTCCAAGGTAGTTGTTCCCTAGGTGCTT
ACTTATTTTAGAATTTTTTTTCTAA-AGCATGCAAAATGTGTGCCATAGCTTTACAGAGGATAGATGTAAAATACAAGAA
TTACAGACAAACTCCCACCACACCTGG-TGAGAAGTAAACTCCTCTCCAACTCGAATGCACACATTACAACCACAATGCA
CAAGATCATGTCCTAAACTGGCCATCAAAGCCGCATCTCAACCAACACCGGCCATCTTCAAAGAGCAACAACTCCAAAAG
AACTAATCTTGCCGACGCACCAACCACCCCTTGAA-GGCCTAAAAGAGTCGGCACGTGGGTGATGGGACCCAGACAACTA
CGAGAAAGTCATCATCTAGGACTCACCCGCAACGGCGTACATAGCGCCCCTAGACCCTAGAGAACAATCCATAAAAGTAG
CGAGCACCATAGGAACGCAAGATAGAACCTCCAAGCCATGTGTCCAAATACGATGCTCCAAACAGAGAAACGACGCCAAG
GGCGCAACCATCGTCATTCCGGATCCGAACCTAGGCTTTCACTCGGAGAAAACAAACC------
>chr1B_1
GATCGACGTCATGGCCTACCGATACATGTGCCGGCAGTAGCACAAGAAGCTCTACTATATATGTTGCCAGCAGATGACAG
TTGGCAATATCGACACGTGTTAGCGGAACATTCCAATCGACGTCGCGCGGATCAAGATCAAGGGTGTCGTGCACGTTACC
ATAGCGAAGAATATATGTCAAAAGGGAAGAACATGTCAGGAAATCAGGCCCCCAAATCATGGAGATGGTCTGCATGTGCA
ACGAATTTGATTGGTCCAATTAGTTAAATCGGCACAATGGTGCATACCATGATCAGCTCCCCGGAGGGGAACATGGTGGC
ACAT-----------TATCTCTACCAGTACTTAACTATAGTTAACATAGGGAGGAGGGAGATGTATTACATGTACTAATA
TACTCCTATATCGTGCTTAGCAAACTATGTATGTGTGCACATGACGCATGAGAC--TTTTCTGTGCTGCATGCACTTTTG
CTGAGGTGGCAGGGGGTTAGAGTGGTGTGGTTCATGTGGGCCCTTGACACATCACACATG----CATGCATGCATATGCA
TGGTAGTGGCGCCTTGAGGAGGAACATGCAGTGGAGGGAGGGATACAGGGTGTTCTGATGAGGAGGTCATAAAAGGAGTG
CATGCATGGTTGGTTGGTGGTGTATG----AGAGGTGTCT-GCCTGTGTTTGGATGGATGAGAAGATCAGAAATGTTTGT
TGTTTAAGATAT--CATGTGGTGGCATGTGGTCTTGAGTTAGGAGGAACATGCATGC----CCTCTCCCTCAAGCAATAC
CTCCCATGCATGCCCCTCTCT-----------CTCTCTCTCTAGCATCACATAAATAATGTAGA--------ATATGATC
CACATAAATATACGTATATAATCTAGCTATGCTTGATGCATGTGCATGCTTAATCACAGGACACAACATGGGTTCTTTAT
GCTCTGACACCTAATTCCCCCACATATCTCACCCCTTCCAACCTAGCAGCTCCAACGCGGCCTCTCCTCTCCTATATATA
TGGCACCCCTTTCGCCATGTTCCAACACATGCATACTCAGCCACCAGCTGCATTATCTCCCCTCATCGATCCATCTCCTC
TAGCCACTACTCTACGTA--CGCACTTGCCTGCCTCTCTGTCTCTATCTCTCATTCCAACTCCACGTAGTAGCCGTCGCG
ATCA----AGATCCGCCATGGTTGCACACGCCAGCATCTACTGCAACGCCACCACCGCCACGACCACGACGGCGAGGAGC
GGGCCGGCATACTCCGCCGTGGCTCCTAAGTCGTCGCCGAGGAATGCCAAGAGAAGGAGCGGCAAGAAGGCGACGAGGAC
AAAGGCCGAGCGACGGCGCTGCATGGAGGCGATCAGGAGGAAGATGGAAGCGCTGAGGCGGCTCGTCCCTAGCGGCGGCG
ATCACCGCAGCGACGAGATGGCGGAGGACGACGGAGTGGACGAGCTCCTGTTCCGCGCCGCCGACTACATCGTGCGGCTG
CAGGTGCAGGTGAAGGCGATGCAGCTCATGGTCGACGTGCTGGAGCACACCAAAGACTCTTGAGTATTTATATATTT---
CTAC----TAGGTCGTGTCGAGCAGAGCAGATACATGTACACGCATACCAGTATAGGTACCCGCGTACGTATACAAATTG
TGTTATTTTTTCGATTTTGGGGGTTATTTCTTTCTTTCTTTCTCTTTTGGCGTTTTCGAGAAGTATGAAATACATAGGG-
GGGGTTAATTATACGGGTGGGAATGGT-ATTGGTTTATTCGTTAATTGTTGTGAACTTGCGTGAGTGCGTACT-------
-TACGTAATGGTGTAAATATGTATACATGAGTTTGATATATGTATACATACATATGTACATCGGGTATATGATGTTACAA
T--GGAAATTTTGGTTGCTAGTATTTGTTTACCAATCACTAATTTTTTTTTTCGCGAGAGAAACTTCCAATCTATTCATC
ATCTGTCATGGCAGTACATAGAACATCAGAAGTAACAATAATTACAACCAGATCCATGGACCACCTAGCTAAAACTACAA
GCACTAGAGCGAGCCGAAAACGCGCCACCGTCATCGCCCTTCCTCGCAGAAGCCGAGCAAACATGTTATAGTAGACAATC
GGGAAGTCATCGTGCTAAGGCCACACGGGACCAACACACAAGAACAACATCTGCCGCCGATGAAGAGAAGCGTAAATAGG
AAGGATCAAATCTTTAGACACACATCCAATGACGAACGAAGACTGGATCCAAATAGATCCACCAATGACCAGGACCGATA
GAGTTCCGCAAGATCCGACGGAGATAAAACTTCACACGCCCTTCGATGACACTAGATATACCATCGCGACGGGGATCAGA
TGTGGGAGACATTATTTCTACTAGGGGACATTGCCACCGCCACACAACCCTAACCAAGACGCTGAACGAAACAAGAACAA
GAGTGAGATCCCTCCTGCCGGCGAGGGGTCGGGGTCCTCCGCACCTCCACGGACCAAAGCCCATGGGAGGCGAGGCAGAC
CGCCGCCGGCGCCGATGCGGGTAGGACAAACCCTAGCCACCTAAGAGTTTCTTGTGGAGGAGGAAAAAAATGTTTACTCA
TGTGAAGTTTGTTTCGGAATAAATGTTTATTTTGGCGGGTTTGCTATTTCTCGATTACATGAGAATAGAAATC-------
-----GAACCAACTAGTGATTTGATGGATAAGAGGGTGGTGGTAGTCCTAACCTCTCATGGATCGAACTCCATGGTTGAG
ATTTTTGTGTCTCAAAG----------TAGGAGGTGGCTTTCCGTCAATAGCAATACCAGTGCGACGTGGCTAGCTGCCG
ATGCACACGAGAAGGTGGAGTTGCTTT-CGTTTTGCCTATTTCTCGGATTGAACAACGGCAGATCTCGACAGGAGGATGC
ATCCAAGGGCTTATTGAGACCTCGCCGGAGGCGAGGACAATGTGGATCGCCACCGGAGGAGGAGGGTAGATTGGAGGAGG
AAGATATGGTGATGGCTGCTAGATTTCATTCCCACATTTAATAAAAACTTTTTCCCAAGGCAGTTGT-------------
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>SNPs
----S---------------------------------S--------------------S-----------S--------
---S-S---------------------------S--------------S-------------------------------
--------------------------------------------------------------------SS----------
-----------------------------------S--------------------------------------------
-------------------------------------------------------------------S---------S--
------------------------------------------------------SS---S-----------------S--
--------------S-S---------------------------------------------------------------
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--------------------------SSSS--------------------------------------------------
------------SS-------------------------------------------SSSS-------------------
----------------------S----------------------------S-------S---S----------------
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--------------------------S-----------------------------------------------------
---------------------------------------------------------------------S----------
-------------------S-------------------SS---SS----S---S-----------S-------------
-S-------------------------------------------S--------------S-S-----------------
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------------------------------S-------------------------------------------------
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-----------------------------------------------------------------------S--------
----SSSS------------------------------------------------------------------------
------------------------S-------------------------------------------------------
---------------------------S--------------------S-------------------------------
------S---S-------------S-----S-------------------------------S-----------------
--------------------------------S--------------------SSSSS-SS-------------------
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----------------S------------------------------------------------------S---S----
------------------------------------S-------SS---------------S------S-----------
S----S-------SSSSSSSSSSSSSS---------S-----SS-----S-SS-----------------------S-S-
-------------------------------------S-S----------------------------------------
---------------------------S--S-----------------------------S-------------------
----------------------------S-----------------------------------------S---------
SS--------------S----SS-SS----------S--------S--------S-------------------------
---S-------------S-------S-S---------------S-----S--S---S--S----------------SS--
---------S---------------S-------------------------------S---------------S------
-----SS---------------S------------S----------------S-SSSS-SS-SS--SSS-----------
-----------------S----------SSS--SSS-S--------------------S------SS-------S--S--
--S-----------------SS-------------------S-------------------------SS-S-S--S-S--
-SS--SS------------S----------S--S--------SS--------------SSSSSS
>forward_667
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-------GGTTGGTTGGTGGTGTATGC-----------------------------------------------------
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>reverse_3257
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--------------------------------------------------------CGCGCACATTACAACCACAA----
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