>input_sequence_64700
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----------------------------------------------------------------------------ACAC
CGT----------------CGACTCCGACCCCAGACCAAACGCGAGAGCTCCACCGACAGCAA----------CCCAAGA
TGCACCGGCAGCTCAACCTCTCGCCGGCGCCGAAGCAGCAGCAGCACGACGACGGCGACGGCGGCGACGCGGTGGAGGCT
GTCCCGCTGTGGGTGCCCGAGCAGTCCGCGGAGGCCAAGGCCGACAAGGCGCCCGGCGGCCGGCCGGAGAGGTCCATCCA
CCTCATCCCGCTGCTCACCTTCCTCTGCTTCCTCCTCCTCTTCCTCTGCTCCCACGCCCCTTCCTCCTCCGGTAAGCATC
ATCGTCCATGGCCACAGATCCAGATGCACAAGTTCATGTGAAATGAAATAGTCGTCGCGTGCCTTCCCTTCTGACGATTC
GCGTTTTGACTTGGTCTTTCTT----AGATATGTCGAGCTTCGGCGGTGGCGGCGGCGGCGCCGGC------GGACGGAA
GGCTGGCAACCGGAGGCTGATGATGCTATAAGCTTCTCGCATCAGCTAGTATACCACACCTTAAATTTTTGTGGCTCCTT
CCTTTGCCAGTTTCAATCCAACAGCGCGATATAATTTGCAC--------------------ACTGTACTTGTGCAGCAGC
AGTAATGAAATCTTGAATTGTATGCTTGCCTTGCCTCCTTGCTTCTACAGTACGATTCTTGGTCGTTTGAGTTGCTTCTC
AACAAAATTGAGACGATAGTAGGAAATCTGCTTATAGAATGTCTAGATAATTTGACGTGATCCAAGGTGAAATAGATGCA
ATTATGCATTGACCTTAAGTCCCAACACATTGTTGGTCTGATCCACACTTCAACTAGC------AGCGCAACGCATGGTG
CGGATGTTGCATATTCAAATGGTTTCAGAGAAACCAGAATTTGGATGCAGAATCCCATTTGTGGCAAGGCTCGAAAAAGA
ACAAATGAAAATACACCGCGCAGTAGGAATCTACGAGTAGAAAATAAA--------------------------------
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>chr6D_1_TraesCS6D01G249100
TTTTCCAGAGTGACCTAAGTGCAACCGAGTATCAGCATCGTCAGAGGTGGCAAACCTCATCACCATTGTATCCGAACAGG
TTTTGCTGACGCACGTGTGAAAAACAAATGTTCAACGGTCCGTTCCATTCAACTGTTGCACAAAATGCAGCGATCACCAG
GAGTATATTGTAGTGTGTTCGGCGGAGCATATTCTTTCCATTGACTCTATTGGCCAGCACAAGCCAAGCAAACACTTTGA
GCTTCGCTGTGCATCTTAACTACCAAATGCATTTTGAGCCGGGGTCCTCCTTGTGCCCATGTTAACATTGTAGGTCAATA
AATCTCCCCCATTTACCTTAAAAGAATATAAATTTCGCGGGGTGCCTTAAAAGAATTTAGCCACGTTTTCCCTCTACAAC
ATCCGGCGCAATGTCCCACCGACGTGCTTTCGAAGCCAACAACCCCTAACAAGAACAAGAACAAGAACAAGAACAAGGTG
CACCCCATCTCTCTTGCGTTGTTTACACTAACTAATACCAACATGCCCAAAGATTACAGCCACACTAAAACAAAGCAAAG
AAGCGATCGAAGCAAATACGTTGACCACAA--------------------ACACGGTTTGCTCTTTTGACAATTGCGGTC
TCCACAGACGCGCGCTCGCGAAGCTGCGGGGCAACGGCCGTGCGCGCGCGTGCCAGCGAGGTGCGAACCGCGG--CGCGA
TTCCGGAGACAGCGAGAATCCGAGGAGCACCACCAAGTGGCCAGCGGCCTAATTGCTTGC------------CTCGCGGC
GCGGTCGTCGGCTCATCATGCGCCGCGGCCCGCGGTGGGCGGCTCCGCATTTCCCACCAGCTCCGACCTCCGAGTTAGGC
GCCACAGCAGCATCACCTTCGAGC--------------------------------------------------------
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--ACTATTCAACTGCAGATATTTCCCTTCCTTCCTTCCTTCG----CTTGCAAACCAAACCAAACCAAACCAAGCAC---
----------------CCGCTGCTGCTTCCTTTCCCGTGGCATTTAAAAGCGCGTCTCGCCCGCTCGTCCACCCC-ACAC
CGT----------------CGACTCCGACCCCAGACCAAACGCGAGAGCTCCACCGACAGCAA----------CCCAAGA
TGCACCGGCAGCTCAACCTCTCGCCGGCGCCGAAGCAGCAGCAGCACGACGACGGCGACGGCGGCGACGCGGTGGAGGCT
GTCCCGCTGTGGGTGCCCGAGCAGTCCGCGGAGGCCAAGGCCGACAAGGCGCCCGGCGGCCGGCCGGAGAGGTCCATCCA
CCTCATCCCGCTGCTCACCTTCCTCTGCTTCCTCCTCCTCTTCCTCTGCTCCCACGCCCCTTCCTCCTCCGGTAAGCATC
ATCGTCCATGGCCACAGATCCAGATGCACAAGTTCATGTGAAATGAAATAGTCGTCGCGTGCCTTCCCTTCTGACGATTC
GCGTTTTGACTTGGTCTTTCTT----AGATATGTCGAGCTTCGGCGGTGGCGGCGGCGGCGCCGGC------GGACGGAA
GGCTGGCAACCGGAGGCTGATGATGCTATAAGCTTCTCGCATCAGCTAGTATACCACACCTTAAATTTTTGTGGCTCCTT
CCTTTGCCAGTTTCAATCCAACAGCGCGATATAATTTGCAC--------------------ACTGTACTTGTGCAGCAGC
AGTAATGAAATCTTGAATTGTATGCTTGCCTTGCCTCCTTGCTTCTACAGTACGATTCTTGGTCGTTTGAGTTGCTTCTC
AACAAAATTGAGACGATAGTAGGAAATCTGCTTATAGAATGTCTAGATAATTTGACGTGATCCAAGGTGAAATAGATGCA
ATTATGCATTGACCTTAAGTCCCAACACATTGTTGGTCTGATCCACACTTCAACTAGC------AGCGCAACGCATGGTG
CGGATGTTGCATATTCAAATGGTTTCAGAGAAACCAGAATTTGGATGCAGAATCCCATTTGTGGCAAGGCTCGAAAAAGA
ACAAATGAAAATACACCGCGCAGTAGGAATCTACGAGTAGAAAATAAACAGACACCATGGCCACTTTGTACAGACAATAA
AGCTTGTGGCACCACTTTCCTTCCATAATAAAACAACAACACATCGACAAAACAAACTATAGAAGACAATATAATTCAGT
TGCAGCTGCACTATCAAATAAATCATCAAATGCAT-CCTAGGCAGGTCCGGGCTTCTTTGGGGAATTGCTAGAATTTGCA
TCATCAGTGGCCATGCAGACGGCGATGGTTACAGGGCTGCTTGGAATATCGCTGTTTGCAACTTCAGTGACCGGTTGCTT
GTGTTCCTGCTCAGTTTGCTCAGTCATCAGAAAACTTTCAGGTGTGCTGGCCTTCGGTAACTCAGCCTCCCGATGCTTAT
GCTCCTCGGCTGTTATTCCAGTGTTTTCTTGAGTTTGGGCCTTTGCGATTTCGGCATCTCGATCTTTCTGTTCACCGTTA
CCCATTTCAGTATCTTCTGGTTTGTTGGTCTCTGGACATCCGCCCTCCTGATCAGCCATTTGGCCCGTTTCAGTATTTTC
TGGAACAGGCACCTTAGCTGGATCACTTTCCTGGCACTTGCTCTCTTGTCCTGCCTCTTCAGAACTCTTCGCGAGTTCAT
CTTCCTGCTCAGCCATCGCCCTTTCCTTGTTGTAGGCCTCAGTCGCAGTCGTCGCAACTTTGCTGTAGGCACCAGTTACC
CATGCTGCGCCGGTAAGGATATATCTGTGTCTCATGATCTTGGAACCAGCAGTAGAAACGGTCTGCTCCGCAGCTACCAA
TGCAGACTTGGTCTTCTCTGCAACCTGGTATTTCTCATCCATTTCCTTCATTTTCTCATTCACCACTATGGTGCCAGTGC
TGATCTTCTCACTGAGGCCCAGACTCTTATCAATGGAAGATACTTTAGCACTTGCAGTCGATCGTGAGCTGATGTGTTTC
ATCAAAAGTCTTTGCCTTTTCAACGGCGTCCTTGCCAAGAATAAATCCTTTGGCCAACATGGAACCAGCAACATCCTCTG
CCTTTCGAA
>chr6A_170
GTT-----------------------------------------------------------------------------
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------------GTGTCTTCGGCGGAGCATATTCTTTCCGTTGACTCTATCGGCCAGCACAAGCCAAGCAAACACTTCGA
GCTTCATGGTGCATCTTGACTACCAAATGCATTTTGAGCCGGGGCCGTCCTTGCAACCATGTTAACATTGCAGGTCAATA
AATCTCTCCCATTTGCCTTAAAAGAATATATTTTTTGCGGGGTGCCTTAAAAGAATCTAGCCACGTTTTCCCTCTAAAAC
ACCCGGCGCAATGTCC-ACCGACGTGTTTTCGAAGCCAACAACCCCTAACAAGAACAAC------------------GTG
CACCCCATCTCTCTTATGTTGCTTATCACTAT--ATACCAACATGCCCAAAGATTAAAGCCACACTAAA-CAAAGCAAAG
AAGCGATCGAAGGAAACATGTTGACCAGACTTCTCTTGAGCGCAGAAACCACACGGTTTGCTCCTTTGACAATTGCGCTC
TCCACAGACG----CTCGCGAAGTTGCGGGGCAATGGCCGTGCGCGCGTGTGGCAGC-----------------------
-----GAGACAGCGAGAATCCGAGGAGTACCCCCAAGTGGCTAGCGGCCTAATCGCCTGTTCGGCCGTTATTCTCGCGGC
GCGGTCGTCGGCTCATGATGCGCCGCGGCCCGCGGTGGGCGGCTCCGCATTTCCCACCAGCTCCGACCTCCGAGTTAGGC
GCCACAGCAGCATCAAACACGTCACTAGTATTTCCTCTGTTTTTATTTAGTTCACGTATTAGCTTTGGTCAAAGTCAAAC
TTTGTAAACTTTGATCAATTTTATAAATAAAAATATTAACATATAATATAACAAATCAACATCATTAGATTTATTATTGA
ATGTACTTTCACATAGTATAAATTTGTTATGGTAAATGTTTATATTATTTTCTATAAATTTGGTCAAACTTGACGAAATT
TGACTTCAGTCAATTTTAATATACGAAGTAAATAAAAACGGAGGGAGTACTCTATTTTCTACTACTAGTACGTACTAGTA
CTACTATTCAACTGCAGATATTTCCCTCCCTTCCTTCCTTCCTTCACTTGCAAACCAAACCAAACCAAACCAAAGCAAGC
ACCCGCTGGCCGGTGGCCGCGGCTGCTTCCTTTCCCGTGGCATTTAAAAGCGCGTCTCGCCCGCTCGTCCACCCCCACAC
CGTCAACTCTGCCCTGCCCCGCCTCCGACCCCAGGCCAAACGCGAGAGCTCCACCGACAACAACCCCAGCCTTCCCAAGA
TGCAGCGGCAGCTCAACCTCTCGCCGGCGCCGAAGCAGCAGCAGCACGACGACGGCGACGGCGGCGACGCGGTGGAAGCG
ATCCCCCTTTGGGTGCCCGAGCAGTCCGCGGAGGCCAAGGCCGACAAGGCGCCCGGCGGCCGCCCGGAGAGGTCCATCCA
CCTCATCCCACTGCTCACCTTCCTCTGCTTCCTCCTCCTCTTCCTCTGCTCCCACGCCCCCTCCTCCTCCGGTAAGCATC
ATCGCCCATGGCCACAGATCCAGATGCACAAGTTCATGTGAAATGAAATAGTCGTCGCGTGCTTTCCCTTCTGACGATTC
GCGTTTTGACTTGGTCTTTCTTTCTTAGATATGTCGAGCTTCGGCGGTGGCGGTGGCGGCGCCGGCGCCGGCGGACGGAA
GGCTGGCAACCGGAGGCTGATGATGCTATAAGCTTCTCGTATCAGCTAGTATATCACACCTTAAATTTTTGCGGCTCCTT
CCTTTGCCAGTTTCAATCCAACAAAGCGATGTAAT---------------------CGTATACTGTACTTGTGGAACATC
AGTAATGAAATCTTGAATTGTATGCTTGCCTTGCCTCCTTGCTTCCAG-----GATTCTTGGTCGTTTCAGTTGCTTCTC
AACGAAATTGAGATGATAGTAGGACATCTGCTTACAGAATGTCTTGATAATTTGACGTGGCCCAAGGTGGAATAGATGCA
ATTATGCATTGACCTTAAGTCCCAACACATTGTTGGTCTGATCCACACTTCAACTAGCAGCGCAAGCGCAACGCATGGTG
CGGATGTTGCATATTCAAATGGTTTCAGAGAAACCAGAATTTGGATGCAGAATCCCATTGTAGCAAAGGCTCTAT-AAAA
ACAAATGAAAATACACCGGGCAGTCGGAATCTA------GAAAATAAGCAGACACCATGGTTACTTTGTACAGACAATAA
AGCTTGTGGCACCACTTTCCTTCCATAATAAAACAACAACACATCGACAAAACAAACTACAGAAGACAATATAACTCAGT
TGCAGCTGCACTATCAAATAAATCATCAAATGCATCCCTAGGCAGGTCCGGGCTTCTTTGGGGAATTGCTAGATTTTGCA
TCATCAGTGGCCATGCAGACGGCGATGGTTACAGGGCTGCTTGGAATATTGCTGTTTGCAACTTCAGTGACCGGTTGCTT
GTGTTCCTGCTCAGTTTGCTCAGCCATCAGCAGACTTTCAGGTGTGCTGGCCTTCGGTAACTCAGCCTCCTGATGCTTAT
GCTCCTCAGCCGTTATTTCAGTATTTTCTTGAGTTTGGGCCTTTGCGATATCACCATCTTGAGATTTCTGTTCGTCTTTA
CCCGTTTCAGTATCTTCTGGTTTGTTGGTCTTTGGACATTCGCCCTCCTGATCTGCCATTTGGCCCGTTTCAGTATTTTC
TGGAACAGACACCTTAGCTGGATCACCTTCCTGACACTTGCTCTCTTGTCCTGCCTCTTCAGAACTCTTCACGAGTTCAT
CTTCCTGCTCAGCCATCGCCCTTTCCTTGTTGTAGGCCTCAGTCGCAGTCGTCGCAACTTTGCTGTAGGCACCAGTTACC
CATGCTGCGCCGGTAAGGATGTATCTGTGTCTCATGAACTTGGAACCAGCAGTAGAAACAGTCTGCTCCGCAGCTACCAA
TGCAGACTTGGTCTTCTCTGCAACCTGGTATTTCTCATCCATTTCCTTCATTTTCTCATTCACCACTATGGTGCCAGTGC
TGATCTTCTCACTGAGGCCCAGACTCTTATCAATGGAAGATACTTTAGCACTTGCAGTCGA-CGTGAGCTGATGTGTTTC
ATCAAAAGTCTTTGCCTTTTCAACGGCGTCCTTGCCAAGAATAAATCCTTTGGCCAACATGGAACCAGCAACATCCTCTG
CCTTTCGAA
>chr6B_587
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--------------------------ACAA--------------------ACACGGTTTGCTCCTTTGACAATTGCGCTC
TCCACAGACGCGCGCGCGCGAAGCTGCGGGGCAACGGCCGTGCGCGCGCGTGCCAGCGAGGTGGTGCGATCGCGCCGCGC
TTCCGGAGACAGCGAGAATCCGAGGAGCACCACCAAGTGGCCAGCGGCCTAATGGCTTGC------------CTCGCGGC
GCGGTCGTCGGCTCATGATGCGCCGCGGCCCGCGGTGGGCGGCTCCGCATTTCCCACCAGCTACGACCTCCGAGTTAGGC
GCCACAGCAGCATCATCTTCGAGC--------------------------------------------------------
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--ACTATTCAACTGCAGATATTTC----CCTTCCTTCCTTCCTTCACTTGCAAACCAAACCAAACCAA-----GCAC---
----------------CCGCTGCTGCTTCCTTTCCCGTGGCATTTAAAAGCGCCCCTCGCCCGCTCGTCCACCCC-ACAC
CGTCAACCCTGCCC-----CGCCTCCGACCCCAGACCAAACGCGGCAGCTCCACCGACAGCAAC-----CCTTCCCAAGA
TGCAGCGGCAGCTCAACCTCTCGCCGGCGCCGAAGCAGCAGCAGCACGACGACGGCGACGGCGGCGACGCGGTGGAGGCG
GTGCCGCTGTGGGTGCCCGAGCAGTCCGCGGAGGCCAAGGCCGACAAGGCGCCCGGCGGCCGCCCGGAGAGGTCCATCCA
CCTCATCCCGCTGCTCACCTTCCTCTGCTTCCTCCTCCTCTTCCTCTGCTCCCACGCCCCTTCCTCCTCCGGTAAGCATC
ATCGTCCATGGCCACAGATCCAGAT--------TCATGTGAAT--AAATAGTCGTCGCGTGCTTTCCCTTCTCACAATTC
GCGTTTTGACTTGGTCTTTCTT----AGATATGTCGAGCTTCGGCGGTGGCGGCGGCGGCGCCGGC------GGACGGAA
GGCTGGCAACCGGAGGCTGATGATGCTATAAGCTTCTCGCATCAGCTAGTATACCAGACCTTAAATTTTTGTGGCTCCTT
CCTTTGCCAGTTTCAATCCAACAGCGCGATGTAATTTGCACTCAGCTATGCAGCTGCGTATACTGTACTTGTGCAGCAGC
AGTAATGAAATCTTGAATTGTATGCTTGCCTTGCCTCCTTGCTTCCAG-----GATTCTTGGTCGTTTGAGTTGCTTCTC
AACAAAATTGATATGATAGTAGCATATCTGCTTATACATTGTCA------------------------------------
------------------------------TGTTTGTCTGGTCCACACTTCAACTATT------AGCACAATGCATGGTG
TGGATGTTGCATATTCAAATGGTTTCAGAGAAACCAGAATTTGGATGCAGAATCCCATTTGTGGCAAGGCTCGGAAAAGA
ACAAATGAAAATACACCGCGCAGTAGGAATCTACGAGTAGAAAATAAACAGACACCATGGTTACTTTGTACAGACAATAA
AGCTTATGGCACCACTTTCCTTCCGCAATAAAACAACAACACATCGACAACGCAAACTATAGAAGACAATATAATTCAGT
TGCAGCTGCACTATCAAATAAATCATCAAATGCATCCCTAGGCAGGTCCGGGCTTCTTTGGGGAATTGCTAGAATTTGCA
TCATCAGTGGCCATGCAGACGGGGATGGTTACAGGGCTGCTTGGAATATCGCTGTTTGCAACTTCAGTGACCGGTTGCTT
GTGTTCCTGCTCAGTTTGCTCAGTCATCAGAAAACTTTCAGGCGTGCTGGCCTTCGGTAACTCAGCCTCCCGATGCTTAT
GCTCCTCGGCTGTTATTCCAGTGTTTTCTTGAGTTTGGGCCTTTGCGATTTCAGCATCTTGACCTTTCTGCTCACCATTA
CCCATTTCAGTATCTTCTGGTTTGTTGGTCTTTGGACATTCGCCCTCCTGATCAGCCATTTGGCCCGTTTCAGTATTTTC
TGGAACAGGCACCTTAGCTGGATCACTTTCCTGACACTTGCTCTCTTGTCCTGCCTCTTCAGAACTCTTCGCGAGTTCAT
CTTCCTGCTCAGCCATCGCCCTTTCCTTGTTGTAGGCCTCAGTCGCAGTCGTCGCAACTTTGCTGTAGGCACCAGTTACC
CATGCTGCGCCGGTAAGGATATATCTGTGTCTCATGATCTTGGAACCAGCAGTAGAAACGGTCTGCTCCGCAGCTACCAA
TGCAGACTTGGTCTTCTCTGCAACCTGGTATTTCTCATCCATTTCCTTCATTTTCTCATTCACCACTATGGTGCTAGTGC
TGATCTTCTCACTGAGGCCCAGACTCTTATCAATGGAAGATACTTTAGCACTTGCAGTCGA-CGTGAGCTGATGTGTTTC
ATCAAAAGTCTTTGCCTTTTCAACGGCGTCCTTGCCAAGAATAAATCCTTTGGCCAACATGGAACCAGCAACATCCTCCG
CCTTTCGAA
>SNPs
S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS----S----------------------S----------S--------------------------S--
-----SSS---------S--------------------------S-S------SSS--------------S---------
------S-------S---------------SS---S--------------------S-------------------S---
-S--------------S---------S-------------------------------SSSSSSSSSSSSSSSSSSS---
---------------SS----S---SSSSS-SSS----------------------S------------S----------
------------S---S-S--------------------------------------------S-------------S--
---------------------------------------------------------------SSSSSSS--S------S
-----------------------------------------------------S--------------------------
----------------S---------------------------------------------------------------
---------------S----------------------------------------------------------------
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---------------------------S-------------S--------------------------------------
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---------------------S----------------------------------------------------------
----S--------------------------------------------------------------------------S
--------------------------------------------------------------S-----------------
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--------------------------------------------------------------S-----------------
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------------------------------S-------------------------------------------------
---------------------------------------------S-SSSSSS---------------------------
-------------S----------S-------------------S--------------SS--------S----------
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------------------------------------------------------------SS------------------
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----------------------------------------------------S------S--S-------------S---
-------------------------------S-------S----------------------------------------
---------------------------------S----------------------------------------------
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-------------------------------------------------------------S------------------
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>forward_162
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--------------------------------------------------------------AAATGCAGCGATCACCAG
GA------------------------------------------------------------------------------
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>reverse_1743
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--------------------------------------------------------------CTTCCCTTCTGACGATTC
GC------------------------------------------------------------------------------
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>forward_502
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--CCCCATCTCTCTTGCGTTGT----------------------------------------------------------
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>reverse_2914
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---------------------------------GCACTTGCTCTCTTGTCCTG---------------------------
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