>input_sequence_64657
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---------------------------------------------TTCTTCGCGTTTCTTCCCCCCACAGTCTCTTTTAC
TCTCCCCTTCTCCTTCCCCAAGCCAAGCAAAGGCAGCAGAGGCCAAGAA-------------------------------
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-----------------------------------------ATGGGCGACCGGGCGTACGGGCCGTCCTCCAAGCCGGTC
CCTGTGGCGGCACCGCGGTCCGCCAACGGCACGGCGAACGGCGGCGGTGTAGGGACACCTCGGCCTCCGTCCATGGTGCC
CGGTCGCGTCCCGCCGCCGCCGATGTACCGACCAAAGCCGATGCAACCGCCACCGGGCCGTCGGCGGAGCGGGCGCGGGT
GGTGCTGCGCGTGTTGCCTGTGGCTGACGCTGGTGTTGGTGGGGCTGGTGTTCCTTGGAGCAATAGCGTTGGGGGTGTTC
TACGTGATTTACCACCCGGAGCTTCCGACCTTCGCCGTGACGTCGCTCCGTCTGGCGGCGCTGAACGTCTCCGACTCCGA
CTCCGTCACCTCCCGCATCGAGTTCACGGTGACCGCGCGCAACCCCAACGAGAAGATCGCGTTCGTGTACGGCGACATCG
GGGCTGCCTTCGCGGCCGACGGCACGGACATCGGGGACGGCACCGTGCCGGGCTTCCTCCACCCCAGCCGCAACACGACG
GTCATCAAGGGGTCGGCTTCGGCGGCCGCCGCGACGGTGGACCCGGTGCAGGCGGCCAGTCTCAGATCCAAGAAGTCCCA
TGCGATGTCAGTGGAGATGGACTCCAAGGTGGGTTTCCAGATCGGGCAGTTCAAGTCGAAGCGCATCAGCGTCCGTGTGC
TGTGCGGTGGCTTCAGCGCGGGGCTGGCCAAGCCGGCGCCCTCCCCGGCGCCGATCATCGTGGCCGCGGCGCCTGCGCCG
ACCCGGTCAAAAATCAGGCTGTCGTCGTCTTCCACCGGAGGCGGCGGGTCGGCGACGACGGACGCAAAGTGTAAGCTCCG
CGTCAAGATCTGGATTTGGACGTTTTGA----------------------------------------------------
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>chr3A_1_TraesCS3A01G205000
GGAGCTCCGCACTGCGCTCGACCACCACATGCGGCCCGCCGTCCTCACGCCTGAGCCCTCAGGCCAGCCGTCCGCCTGCG
CAAGCCGCCGGTCGCACGACGGCGCCGCCACGCCAGCAGGGGCCGGCGCCCTGGATCCGAGAGCCTTCGCGAAGAAGGAG
CGCCAAGGACCCCGCCGCCACCTTCCCGGCGCCCCCACGGGCTTTCCCGACGATCGTCTCCAGTGGCCGCGAGGAGGAGC
GGGGGAGGGGTGGCGGCGGAGGCTAACCCTAGTCGCCCCGAGTCGCCCTAGGGGCGACGCGAGGGACGGAGGAGGGGGAA
GCCTGCCAATTTGAATGATCTCACGGTCTAGACTAGCTAGAACTCCACACAATCGCACATTAGTATGTTGAGAAAAGCAT
AAACAAGGGACGCGGAGTTTTGGCTCCCGAGCTCATCTGCACCCACGCTCAGAAAAAAATACTAGAAAAATTAAAAAAAA
ATCCAATTTTTTTGTGTAGTAGATAATTTGACGCATGAGGTCCGCTCTAAATTTCAACTCATTTGAGCATCTGAGTAGCT
CTCGGCAAAAAAGACAAAATCGGGGTCTGTAAAAATGTTCACTGTTCACGGACTGTTTTGACCCGATTTGTCTTTTTTGC
CGAGAGCTACTCAAATGTTCAAATAAGTTGAAATTTGGAGCGGATCTCACGCGACAAATTATCTATCACACAAAAAATTT
TGAATTTTTTGAATTTTTTAGTATTTATTTTGATTTTGTTTCTGAGCGGGAGCAGATGAGCCTGGGCACCGAATTGGATA
TCCGATAAACAAGAAGTTATATAAAATTTACTCATAACAAA----AAAGATAAAGATGGTGAAAAGAAACTAATAAAAAG
GGGGAAATCCTTACCAAA-AAGGTGAGTGACCATAGAAATTGAGAATGCCTAGACCAGCAAGCAAACACATACTACCACA
ATATATACAGTGTATATATAAATGCGTCCACTTATTGCGCCCCTCTTCTTCGCGTTTCTTCCCCCCACAGTCTCTTTTAC
TCTCCCCTTCTCCTTCCCCAAGCCAAGCAAAGGCAGCAGAGGCCAAGAA-------------------------------
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-----------------------------------------ATGGGCGACCGGGCGTACGGGCCGTCCTCCAAGCCGGTC
CCTGTGGCGGCACCGCGGTCCGCCAACGGCACGGCGAACGGCGGCGGTGTAGGGACACCTCGGCCTCCGTCCATGGTGCC
CGGTCGCGTCCCGCCGCCGCCGATGTACCGACCAAAGCCGATGCAACCGCCACCGGGCCGTCGGCGGAGCGGGCGCGGGT
GGTGCTGCGCGTGTTGCCTGTGGCTGACGCTGGTGTTGGTGGGGCTGGTGTTCCTTGGAGCAATAGCGTTGGGGGTGTTC
TACGTGATTTACCACCCGGAGCTTCCGACCTTCGCCGTGACGTCGCTCCGTCTGGCGGCGCTGAACGTCTCCGACTCCGA
CTCCGTCACCTCCCGCATCGAGTTCACGGTGACCGCGCGCAACCCCAACGAGAAGATCGCGTTCGTGTACGGCGACATCG
GGGCTGCCTTCGCGGCCGACGGCACGGACATCGGGGACGGCACCGTGCCGGGCTTCCTCCACCCCAGCCGCAACACGACG
GTCATCAAGGGGTCGGCTTCGGCGGCCGCCGCGACGGTGGACCCGGTGCAGGCGGCCAGTCTCAGATCCAAGAAGTCCCA
TGCGATGTCAGTGGAGATGGACTCCAAGGTGGGTTTCCAGATCGGGCAGTTCAAGTCGAAGCGCATCAGCGTCCGTGTGC
TGTGCGGTGGCTTCAGCGCGGGGCTGGCCAAGCCGGCGCCCTCCCCGGCGCCGATCATCGTGGCCGCGGCGCCTGCGCCG
ACCCGGTCAAAAATCAGGCTGTCGTCGTCTTCCACCGGAGGCGGCGGGTCGGCGACGACGGACGCAAAGTGTAAGCTCCG
CGTCAAGATCTGGATTTGGACGTTTTGATGCATCTGCGGGTAGGGAGAGGAGGGATTTTTTTCGGTTTGGTTT-AACCTT
TTTCACACTGTATGTGGATTTATTGGAGTATAGTCTATATGATTTTATCTTCCTCTTGGTTGCTT--CTTGCTACTCTCA
TTCATCCTTTCTTTGTCACAAGCAAAAACAAGCCAAGTACGCTGCATAGATCTATGCTAC------------AGTCGGGC
ATAATTCTGCAAGAAGGGTATAGTAGTACTACTAGTTAACGACACCACAGTGAAACCTGCAGCCGAGAAGAAATGGAGGT
GAACTGG-GTAC----GCAAGCGAGCGATTCAGCGCACGCGCGTCGGTGGCGTCAACAGAAGCGGGCGATCTCCAGCTCG
ATTTCCTTTTTGGTTTCTCTCCCTACCGTTTCCACAATCTCTCTTCTTCTCTCATCCGGGGAACCGGCCGGGCACAGCTG
TACCTTGGCTGGCAGCCGACGCCGACGCCGACGCCGACGTGCGGGCCCATCGGCTTCCGGGACAGCATATAGTAGTGAAC
TGTGGATAGGCGGCTGGGCCTGGAAAGAA---AAAAAATGCCGTTGGTTTGTGCGTG---------GCGAGGCGATATGA
CGTGTGTCGGGGAAAGGATGAGGGAGAGAGAAAGGGTGGACGTCACTCTCGCTCCAGTCCAGTGCCTTTGGCTCGGCTCG
GCAGTGCAGCAGGGGTCTCCCTAGTCCCAAGTGAACAGTGACAACCGCTGAGTGCTCATAGTGGTAGTACAATCCGAGAG
AGAAGAGCTGATTTTTATTTTATTTCAAGAATTCCAGAAGAAAGGAGATAAGGGACAGATGATTAGTCAGTGAGAATTGC
TAAGCGCAGTGGACCACGTGAGGTGTGAATGCTGGGTAGGCGACCTCGCCGAGATTTGCTAAGCGCACATGAGTCGCATA
CGCCATACATAACGGTTACATAATCATCTGTGTAGTTTCTTAATCAGTACGGTTGGCGAGCAACGGAAGAAGCAGGATGA
TAATAGGGGTATGCACGGCT
>chr3B_807
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------AAACAAGAATATATATGTAATTTACTCATAACAAAGCAAAAAGATAAAGAGGTTGAAAAGGAACTAATAAAAAG
GGGGAAATCCTCGCAAGA-AAAGCGAGTGACCATAGAAATTGGGT-TGCCTAGACCAGCAAGCAAACACATACTAGCACA
ATATA-ACAGTGTATATATAAATGCGTCCACTTATTGCGCCCAACTTCTTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGGCGACCGGGCGTACGGGCCGTCCTCCAAGCCGGTT
CCTGTGGCGGCGCCGCGGTCGGCCAACGGCACGGCGAACGGCGGCGGCGTAGGGACACCTCGGCCTCCGTCCATGGTGCC
CGGTCGCGTCCCGCCCCCGCCGATGTACCGACCGAAGCCGATGCAACCGCCACCGGGCCGTCGGCGGAGCGGGCGCGGGT
GGTGCTGCGCGTGTTGCCTGTGGCTGACGCTGGTGTTGGTGGGGCTGGTGTTCCTTGGAGCAATAGCGTTGGGGGTGTTC
TACGTGATTTACCACCCGGAGCTTCCGACCTTCGCCGTGACGTCGCTCCGTCTGGCGGCGCTGAACGTCTCCGACTCCGA
CTCCGTCACCTCCCGCATCGAATTCACAGTGACCGCGCGCAACCCCAACGAGAAGATCGCGTTCGTGTACGGCGACATCG
GGGCTGCCTTCGCGGCCGACGGCACGGACATCGGGGACGGCACCGTGCCGGGCTTCCTCCACCCCAGCCGCAACACGACG
GTCATCAAGGGGTCGGCTTCGGCGGCGGCCGCGACGGTGGACCCCGTGCAGGCGGCCAGTCTCAGATCCAAGAAGTCCCA
TGCGATGTCAGTGGAGATGGACTCCAAGGTGGGTTTCCAGATCGGGCAGTTCAAGTCGAAGCGCATCAGCGTCCGTGTGC
TGTGCGGTGGCTTCAGCGCGGGGCTGGCCAAGCCGGCGCCCTCCCCGGCGCCGATCATCGTGGCCGCGGCGCCTGCGCCG
ACCCGGTCAAAAATCAGGCTGTCGTCGTCTTCCACCGGAGGCGGCGGGTCGGCGACGACGGACGCAAAGTGTAAGCTCCG
CGTCAAGATCTGGATTTGGACGTTTTGATGCATCTGCGGGTAGGGAGAGGAGGGATTTT-TTCGGTTTGGTTT-AACCTT
TTTCACACTGTATGTGGATTTATTGGAGTATAGTTTATATGATTTTATCTTCCTCTTGGTTTCTTTGCTTGCTACTCTCA
TCCATCCTTTCTTTGTCACAAGCAAAAACGAGCCGAGTATGCCGCGTAGATCTATGCTAC------------AGTTGGGC
ATAATTCTGCAAGAACGGG--------AGTACTAGTTAACCACACCACAGTGAAACCTGCAGCCGAGAAGAAATGGAAGT
GAACTCCAGTAC----GCGAGCGAGGGATTCGGCGCACGCACGTCGGTGGCGTCAACAGAAGCGGGCGATCTCCAGCTCG
ATTTCCTTTTTGGTTTCTCTCCCTCCCGTTTCCTCAATCTCTCCTCTCCTCTCCTCTCCTCTCATCCG-GGGCACAGCTG
TACCTTGGCTGGCAGCCGACGCCGACG------------TGCGGGCCCATCGGTTTCCGGAACAGCAT---GTAGTGAAC
TGTGGATAGGCGGCTGGGCCTGGGAAGAA---AAAAATGCTGTTGGTTTTGTGCGTG---------GCGAGGCGATATGA
CGTGTGTCGGGGAGAGGATGAGGGAGAGAGAAACGGTGGACGTCACTCTCGCTCCAGTCCAGTGAC-TTGGCTCGGCTCG
GCAGTGCAGCAGGGGTCTCC-TAGTCCTAAGTGAACAGTGACAACCGCTGAGTGCTGATAGTGGTAGTACAATCCGAGAG
AGAGGAGGTGATTTT--TTTTATTTCAAGAATTCCAGAAGAAAGGAGATAAGGGACGGATGATTAGTCAGTGAGAATTGC
TAAGCGCAGTGGACCACGTGAGGTGTGAATGCTGGGTACGCGACCTCGCCGAGATTTGCTAAGCGCACATGAGTCGCATA
CGCCATGCATAACGGTCACATAATCATCTGTGTAGTTTCTTAATCAGTACGGTTGGCGAGCAACGGAAGAAGCGGGGTGA
TCATAGGCGTGTGCAGGGC-
>chr3D_833
CAAAAC--------------------------------------------------------------------------
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---------------------------------------AA----AAAGATAGAAAGGGTGAAAAGAAACTAATAAAAAG
GGGGAAATCCTTGCAAAAGAAAGTGAGTGGCCATAGAAATTGAGAATGCCTAGACCAGCAAGCAAACACAT-CTAGCACA
ATATA-ACAGTGTATATATAAATGCGTCCACTTATTGCGCCCCTCTTCTTCGCGTTTCTCCCCCC---AGTCTCTTTTAC
TCTCCCCTTCTCCTTCCCCAAGCCAAGCAGAAGCAGCAGAGGCCAAGAA-------------------------------
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-----------------------------------------ATGGGCGACCGGGCGTACGGGCCGTCCTCCAAGCCGGTC
CCTGTGGCGGCGCCGCGGTCCGCCAACGGCACGGCGAACGGCGGCGGCGTAGGGACACCTCGGCCTCCGTCCATGGTGCC
CGGTCGCGTCCCGCCCCCGCCGATGTACCGACCGAAGCCGATGCAACCGCCACCTGGCCGTCGGCGGAGCGGGCGCGGGT
GGTGCTGCGCGTGTTGCCTGTGGCTGACGCTGGTGTTGGTGGGGCTGGTGTTCCTTGGAGCAATAGCGTTGGGGGTGTTC
TACGTGATTTACCACCCGGAGCTTCCGACCTTCGCCGTGACGTCGCTCCGTCTGGCGGCGCTGAACGTCTCCGACTCCGA
CTCCGTCACCTCCCGCATCGAGTTCACGGTGACCGCGCGCAACCCCAACGAGAAGATCGCGTTCGTGTACGGCGACATCG
GGGCTGCCTTCGCGGCCGACGGCACGGACATCGGGGACGGCACCGTGTCGGGCTTCCTCCACCCCAGCCGCAACACGACG
GTCATCAAGGGGTCGGCTTCGGCGGCGGCCGCGACGGTGGACCCCGTGCAGGCGGCCAGTCTCAGATCCAAGAAGTCCCA
TGCGATGTCAGTGGAGATGGACTCCAAGGTGGGTTTCCAGATCGGGCAGTTCAAGTCGAAGCGCATCAGCGTCCGTGTGC
TGTGCGGTGGCTTCAGCGCGGGGCTGGCCAAGCCGGCGCCCTCCCCGGCGCCGATCATCGTGGCCGCGGCGCCTGCGCCG
ACCCGGTCAAAAATCAGGCTGTCGTCGTCTTCCACCGGAGGCGGCGGGTCGGCGACGACGGACGCAAAGTGTAAGCTCCG
CGTCAAGATCTGGATTTGGACGTTTTGATGCATCTGCGGGTAGGGAGAGGAGGGATTTT-TTCGGTTTGGTTTTAACCTT
TTTCACACTGTATGTGGATTTATTGGAGTATAGTCTATATGATTTTATCTTCCTCTTGGTTGCTT--CTTGCTACTCTCA
TTCATCCTTTCTTTGTCACAAGCAGAAACAAGCCGAGTACGCTGCATAGATCTAGGAGTATGCTACAGTCGGAGTCGGGC
ATAATTCTGCAAGAAGGGTATA------CTACTAGTTAGCCACACCACAGTGAAACCTGCAGCCGAGAAGAAATGGAGGT
GAACTGG-GTACGCGAGCAAGCGAGCGATTCGGCGCACGCGCGTCGGTGGCGTCAACAGAAGCGGGCGATCTCCAGCTCG
ATTTCCTTTTTGGTTTCTCTCCCTTCCGTTTCCTCAATCTCTCTTCTCCTCTCGTTTCCTCTCATCCG-GGGCACAGCTG
TACCTTGGCTGGCAGCCGACGCCGACGCC------GACGTGCGGGCCCATCGGTTTCCGGGACAGCAT---GTAGTGAAC
TGTGGATAGGCGGCTGGGCCTGGAAAGAAGAAAAAAAATGCCGTTGGTTTTGTGCGTGGCGAGGGCGCGAGGCGATATGA
CGTGTGTCGGGGAAAGGATGAGGGAGAGAGAAAGGGTGGACGTCACTCTCGCTCCGCTCCAGTGCC-TTGGCTCGGCTCG
GCAGGG----------CTCC-TAGTCCTAAGTGAACAGTGACAACCGCTGAGTGCTGATAGTGGTAGTACAATCCGA---
------GGTGATTTT--TTTTATTTCAAGAATTCCAGAAGAAAGGAGATAAGGGACGGATGATTAGTCAGTGAGAATTGC
TAAGCGCA-----------------------------------------------------------CATGAGTCGCATA
CGCCATACATAACGGTCACATAATCATCTGTGTAGTTTCTTAATCAGTACGGTTGGCGAGCAACGGAAGAAGCGGGATGA
TCATCGGAGTATGCAGGGC-
>SNPs
SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS---------SS-----SS--------------------------------S-----------------------
------------S-S------S-----------------------------------------------------S----
-----S-----------------------------------------------------S-----SSS------------
-----------------------------S-S------------------------------------------------
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-----------S-----------------------------------S--------------------------------
---------------S-----------------S----------------------------------------------
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--------------------------S-----------------S-----------------------------------
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-----------------------------------------------------------S--------------------
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----------------------------------S---------------------------------------------
----------------------SSSSS-------------S---------------------------------------
-------------------------------S------------------------------------------------
------------------------S--------S-------------S-----S--SSSSSSSSSSSSS-----------
-----------------------------SSSSSS------------------S--------------SSS---------
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------------------------------------------------------------------S-------------
--------------------S------S----------------------------S-----------------------
---S---S-------SS---------------------------------------S-----------------------
--------------------------------------S-----------------------------------------
----------------S--------------------------------------------------------S------
-S-----S-------S---S
>forward_531
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-------------------------------CGCATGAGGTCCGCTCTAAA-----------------------------
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>reverse_2521
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----------------------------------------GACACCACAGTGAAACCTGC--------------------
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